bounce to v0.6.0

Author: Florian Schneider

DESCRIPTION

@@ -1,15 +1,16 @@
 Package: traitdataform
 Type: Package
 Title: Formatting and Harmonizing Ecological Trait-Data
-Version: 0.5.7
-Date: 2020-03-11
+Version: 0.6.0
+Date: 2020-10-18
 Authors@R: c(person("Florian D.", "Schneider",, "florian.dirk.schneider@gmail.com", role = c("aut", "cre"), 
   comment = c(ORCID = "0000-0002-1494-5684")), 
     person("Caterina", "Penone", role = c("ctb"), comment = c(ORCID = "0000-0002-8170-6659")),
     person("Andreas", "Ostrowski", role = c("ctb"), comment = c(ORCID = "0000-0002-2033-779X")),
     person("Dennis", "Heimann", role = c("ctb")),
     person("Felix","Neff", role = c("ctb")),
-    person("Markus J.", "Ankenbrand", role = c("ctb")))
+    person("Markus J.", "Ankenbrand", role = c("ctb")),
+    person("Jessica", "Burnett", role = c("ctb")))
 Description: Assistance for handling ecological trait data and applying the 
     Ecological Trait-Data Standard terminology (Schneider et al. 2019
     <doi:10.1111/2041-210X.13288>). There are two major use cases: (1) preparation of
@@ -21,18 +22,19 @@ LazyData: TRUE
 Depends:
     R (>= 2.10)
 Imports:
-    data.table, 
+    data.table,
+    stats,
     reshape2,
     taxize,
     getPass,
     units,
     XML,
     RCurl,
     plyr
-URL: https://EcologicalTraitData.github.io/traitdataform, https://github.com/EcologicalTraitData/traitdataform
-BugReports: https://github.com/EcologicalTraitData/traitdataform/issues
+URL: https://ecologicaltraitdata.github.io/traitdataform/, https://github.com/ecologicaltraitdata/traitdataform
+BugReports: https://github.com/ecologicaltraitdata/traitdataform/issues
 VignetteBuilder: knitr
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 Suggests: 

NEWS.md

@@ -1,3 +1,15 @@
+# traitdataform 0.6.0
+
+Major changes: 
+
+- update internal terms to v0.10 of the Ecological Trait-data Standard (ETS). 
+  In ETS v0.10 the assignment of user-defined and standardised measurement values and trait and taxon assignments has been updated, to match labelling practice in DwC and provide a more intuitive content for those fields. Accordingly
+    - the v0.9.1 terms `scientificName`, `traitName`, `traitValue`, and `traitUnit` have been renamed into `verbatimScientificName`, `verbatimTraitName`, `verbatimTraitValue`, and `verbatimTraitUnit` with new identifiers. 
+    - the terms `scientificNameStd`, `traitNameStd`, `traitValueStd`, and  `traitUnitStd` have been renamed into `scientificName`, `traitName`, `traitValue`, and `traitUnit` and now form the default suggested content for trait data complying with the ETS. Definitions have been harmonized. The original *Std identifiers now resolve to these new terms.
+
+  This causes the output file to differ from earlier outputs. To maintain compatibility with earlier versions, an option `conformsTo` has been added to `as.traitdata()` to return the data table in terms of version 0.9. By default, output is returned in ETS version 0.10.  Data releases created by `traitdataform` should always be labelled with the version of ETS that applies to the data! 
+  
+
 # traitdataform 0.5.7
 
 - Preparing for R 4.0.0 change to read.table() and data.frame(): handling of factor data (trait and taxon names) is now locale-independent

README.md

@@ -107,7 +107,7 @@ We are aiming to provide the following features in future iterations of the pack
 
 ## Cite as
 
-Schneider, F.D. (2020) traitdataform - harmonizing ecological trait data in R, v0.5.7, DOI: [10.5281/zenodo.1489527](http://dx.doi.org/10.5281/zenodo.1489527) http://ecologicaltraitdata.github.io/traitdataform
+Schneider, F.D. (2020) traitdataform - harmonizing ecological trait data in R, v0.6.0, DOI: [10.5281/zenodo.1489527](http://dx.doi.org/10.5281/zenodo.1489527) http://ecologicaltraitdata.github.io/traitdataform
 
 ## License
 

codemeta.json

@@ -7,23 +7,23 @@
   "identifier": "traitdataform",
   "description": "Assistance for handling ecological trait data and applying the \n    Ecological Trait-Data Standard terminology (Schneider et al. 2019\n    <doi:10.1111/2041-210X.13288>). There are two major use cases: (1) preparation of\n    own trait datasets for upload into public data bases, and (2) harmonizing\n    trait datasets from different sources by re-formatting them into a unified\n    format. See 'traitdataform' website for full documentation. ",
   "name": "traitdataform: Formatting and Harmonizing Ecological Trait-Data",
-  "codeRepository": "https://github.com/EcologicalTraitData/traitdataform",
+  "codeRepository": "https://github.com/ecologicaltraitdata/traitdataform",
   "relatedLink": [
     "http://fdschneider.github.io/traitdataform",
     "http://EcologicalTraitData.github.io/traitdataform",
     "https://EcologicalTraitData.github.io/traitdataform",
-    "https://CRAN.R-project.org/package=traitdataform"
+    "https://CRAN.R-project.org/package=traitdataform",
+    "https://ecologicaltraitdata.github.io/traitdataform/"
   ],
-  "issueTracker": "https://github.com/EcologicalTraitData/traitdataform/issues",
+  "issueTracker": "https://github.com/ecologicaltraitdata/traitdataform/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.5.7",
+  "version": "0.6.0",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
-    "version": "3.6.3",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 3.6.3 (2020-02-29)",
+  "runtimePlatform": "R version 4.0.3 (2020-10-10)",
   "author": [
     {
       "@type": "Person",
@@ -60,6 +60,11 @@
       "@type": "Person",
       "givenName": "Markus J.",
       "familyName": "Ankenbrand"
+    },
+    {
+      "@type": "Person",
+      "givenName": "Jessica",
+      "familyName": "Burnett"
     }
   ],
   "maintainer": [
@@ -128,6 +133,11 @@
       },
       "sameAs": "https://CRAN.R-project.org/package=data.table"
     },
+    {
+      "@type": "SoftwareApplication",
+      "identifier": "stats",
+      "name": "stats"
+    },
     {
       "@type": "SoftwareApplication",
       "identifier": "reshape2",
@@ -213,7 +223,7 @@
       "sameAs": "https://CRAN.R-project.org/package=plyr"
     }
   ],
-  "releaseNotes": "https://github.com/EcologicalTraitData/traitdataform/blob/master/NEWS.md",
+  "releaseNotes": "https://github.com/ecologicaltraitdata/traitdataform/blob/master/NEWS.md",
   "readme": "https://github.com/EcologicalTraitData/traitdataform/blob/master/README.md",
   "contIntegration": "https://travis-ci.com/EcologicalTraitData/traitdataform",
   "keywords": [
@@ -223,7 +233,7 @@
     "r-package",
     "ecology"
   ],
-  "developmentStatus": "https://www.repostatus.org/#wip",
+  "developmentStatus": ["https://www.tidyverse.org/lifecycle/#stable", "https://www.repostatus.org/#active"],
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -238,7 +248,7 @@
       "url": "https://ecologicaltraitdata.github.io/traitdataform/"
     }
   ],
-  "fileSize": "284.578KB",
+  "fileSize": "2246.709KB",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",

cran-comments.md

@@ -1,13 +1,14 @@
 ## Resubmission
 
-Preparing package for R 4.0.0 by suppressing stringsAsFactor conversion in read.table() and data.frame(). 
+Updating internal terminology according to a change in the Ecological Trait-data Standard (ETS). 
 
 ## Test environments
 
-* local Windows 10 install, R version 3.6.3 (2020-04-04) 
-* Windows R devel (4.0.0) on win-builder.r-project.org, platform: x86_64-w64-mingw32 (64-bit), R version 3.6.3 (2020-04-04)
-* Mac OS X 10.13.6 (on travis-ci), R version 3.6.2 (2020-04-04) 
-* Ubuntu 16.04.6 LTS (on travis-ci), R version 3.6.2 (2020-04-04) and R devel (4.0.0) (2020-04-04)
+* local Windows 10 install, R version 4.0.3 (2020-10-21) 
+* macOS High Sierra 10.13.6 , R version 4.0.2 (2020-10-19) on travis-ci
+* Ubuntu 16.04.6 LTS R version 4.0.2 (2020-10-19) and R devel (2020-10-19) on travis-ci
+* Windows Server 2008 R2 SP1, R-devel, 32/64 bit (2020-10-21) on R-hub
+* Debian Linux, R-devel (2020-10-17 r79346), clang, ISO-8859-15 locale on R-hub (2020-10-21)
 
 ## R CMD check results