Merge pull request #844 from jadh4v/ENH-handle-CSPS-using-DCMTK

feat(CSPS): add preliminary support for CSPS

Author: thewtex

.github/workflows/python-wasm.yml

@@ -143,6 +143,7 @@ jobs:
         if: ${{ matrix.python-minor-version < 10 }}
         working-directory: ./packages/dicom/python/itkwasm-dicom-wasi
         run: |
+          python -m pip install pillow
           python -m pip install -e .
           pytest
       - name: Test dicom-emscripten chrome

include/itkPipeline.h

@@ -63,6 +63,8 @@
 
 // Parse options while allowing extra flags, not exiting with help flags, and clearning parse state after finished.
 // Use this to parse some positionals or options before all options have been added.
+// WARNING: It is best to only add the pre-parse options and read them through ITK_WASM_PRE_PARSE before adding other options,
+// as you may face issues(EXCEPTIONS) generating bindings (bindgen), if you add "required" options/flags before the PRE_PARSE.
 #define ITK_WASM_PRE_PARSE(pipeline) \
     try { \
         (pipeline).set_help_flag(); \

package.json

@@ -25,8 +25,8 @@
   "scripts": {
     "commit": "git cz",
     "bindgen": "node ./src/itk-wasm-cli.js bindgen ./dist/dicom/src ./dist/dicom/public/pipelines/*.wasm",
-    "build": "npm run build:emscripten && npm run build:tsc && npm run build:tscWorkersModuleLoader && npm run build:tscWebWorkers && npm run build:workerBundles && npm run build:workerMinBundles && npm run build:webpack && node ./src/io/internal/packages/package-json-gen.cjs && npm run build:emscripten:packages",
-    "build:testData": "dam download packages/dicom/test/data packages/dicom/test/data.tar.gz bafybeig4g7wosycckndpiouphtwowakccbkmunsvvgrg5bvjoz63p4s6hi https://w3s.link/ipfs/bafkreicrqj3nps6xep75zafmevtseitj6md2dgbce22jgizefuouc5vfca",
+    "build": "npm run build:testData && npm run build:emscripten && npm run build:tsc && npm run build:tscWorkersModuleLoader && npm run build:tscWebWorkers && npm run build:workerBundles && npm run build:workerMinBundles && npm run build:webpack && node ./src/io/internal/packages/package-json-gen.cjs && npm run build:emscripten:packages",
+    "build:testData": "dam download packages/dicom/test/data packages/dicom/test/data.tar.gz bafybeic2ckitzhl5b476fgfewt7ilel3mkzi5x66o6gga5s7n34g2t36xm https://w3s.link/ipfs/bafkreibxuanogkwccski66azxafdpjjj3sbua6g3pqdvwwwe72h3d6agoi",
     "build:debug": "npm run build:emscripten -- --debug && npm run build:tsc && npm run build:tscWorkersModuleLoader && npm run build:tscWebWorkers && npm run build:workerBundles && npm run build:workerMinBundles && npm run build:webpack -- --mode development",
     "build:tsc": "tsc --pretty",
     "build:tscWorkersModuleLoader": "tsc --types --lib es2017,webworker --rootDir ./src/ --outDir ./dist/ --moduleResolution node --target es2017 --module es2020 --strict --forceConsistentCasingInFileNames --declaration ./src/core/internal/loadEmscriptenModuleWebWorker.ts",
@@ -36,11 +36,11 @@
     "build:webpack": "webpack --mode production --progress --color && webpack --mode development --progress --color",
     "build:emscripten": "node ./src/build-emscripten.js",
     "build:emscripten:compress-stringify": "node ./src/itk-wasm-cli.js -s packages/compress-stringify -b emscripten-build build ",
-    "build:bindgen:typescript:compress-stringify": "./src/itk-wasm-cli.js -s packages/compress-stringify -b emscripten-build bindgen --package-version 0.4.5 --package-name @itk-wasm/compress-stringify --package-description \"Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
-    "build:bindgen:python:compress-stringify": "./src/itk-wasm-cli.js -s packages/compress-stringify -b wasi-build bindgen --language python --package-name itkwasm-compress-stringify --package-description \"Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.\" --package-version 0.4.5 --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
+    "build:bindgen:typescript:compress-stringify": "./src/itk-wasm-cli.js -s packages/compress-stringify -b emscripten-build bindgen --package-version 0.5.0 --package-name @itk-wasm/compress-stringify --package-description \"Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
+    "build:bindgen:python:compress-stringify": "./src/itk-wasm-cli.js -s packages/compress-stringify -b wasi-build bindgen --language python --package-name itkwasm-compress-stringify --package-description \"Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.\" --package-version 0.5.0 --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
     "build:emscripten:dicom": "node ./src/itk-wasm-cli.js -s packages/dicom -b emscripten-build build ",
-    "build:bindgen:typescript:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b emscripten-build bindgen --package-version 2.0.3 --package-name @itk-wasm/dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
-    "build:bindgen:python:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b wasi-build bindgen --package-version 2.0.3 --language python --package-name itkwasm-dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
+    "build:bindgen:typescript:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b emscripten-build bindgen --package-version 2.1.0 --package-name @itk-wasm/dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
+    "build:bindgen:python:dicom": "./src/itk-wasm-cli.js -s packages/dicom -b wasi-build bindgen --package-version 2.1.0 --language python --package-name itkwasm-dicom --package-description \"Read files and images related to DICOM file format.\" --repository 'https://github.com/InsightSoftwareConsortium/itk-wasm'",
     "build:emscripten:packages": "npm run build:emscripten:compress-stringify && npm run build:bindgen:typescript:compress-stringify && npm run build:emscripten:dicom && npm run build:bindgen:typescript:dicom",
     "build:wasi": "node ./src/build-wasi.js && npm run build:wasi:packages",
     "build:wasi:compress-stringify": "node ./src/itk-wasm-cli.js -i itkwasm/wasi:latest -s packages/compress-stringify -b wasi-build build",

packages/compress-stringify/python/itkwasm-compress-stringify-emscripten/itkwasm_compress_stringify_emscripten/_version.py

@@ -1 +1 @@
-__version__ = "0.4.5"
+__version__ = "0.5.0"

packages/compress-stringify/python/itkwasm-compress-stringify-wasi/.gitignore

@@ -0,0 +1 @@
+dist/

packages/compress-stringify/python/itkwasm-compress-stringify-wasi/itkwasm_compress_stringify_wasi/_version.py

@@ -1 +1 @@
-__version__ = "0.4.5"
+__version__ = "0.5.0"

packages/compress-stringify/python/itkwasm-compress-stringify/.gitignore

@@ -0,0 +1 @@
+dist/

packages/compress-stringify/python/itkwasm-compress-stringify/itkwasm_compress_stringify/_version.py

@@ -1 +1 @@
-__version__ = "0.4.5"
+__version__ = "0.5.0"

packages/compress-stringify/python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify.py

@@ -1,7 +1,7 @@
 # Generated file. Do not edit.
 
 import os
-from typing import Dict, Tuple, Optional
+from typing import Dict, Tuple, Optional, List
 
 from itkwasm import (
     environment_dispatch,

packages/compress-stringify/python/itkwasm-compress-stringify/itkwasm_compress_stringify/compress_stringify_async.py

@@ -1,7 +1,7 @@
 # Generated file. Do not edit.
 
 import os
-from typing import Dict, Tuple, Optional
+from typing import Dict, Tuple, Optional, List
 
 from itkwasm import (
     environment_dispatch,