updated file behavior docs and skipping dirs in file search

Author: flowstate

README.md

@@ -5,10 +5,10 @@ The Socket Security CLI was created to enable integrations with other tools like
 ## Usage
 
 ```` shell
-socketcli [-h] [--api-token API_TOKEN] [--repo REPO] [--integration {api,github,gitlab}] [--owner OWNER] [--branch BRANCH] 
-          [--committers [COMMITTERS ...]] [--pr-number PR_NUMBER] [--commit-message COMMIT_MESSAGE] [--commit-sha COMMIT_SHA] 
-          [--target-path TARGET_PATH] [--sbom-file SBOM_FILE] [--files FILES] [--default-branch] [--pending-head] 
-          [--generate-license] [--enable-debug] [--enable-json] [--enable-sarif] [--disable-overview] [--disable-security-issue] 
+socketcli [-h] [--api-token API_TOKEN] [--repo REPO] [--integration {api,github,gitlab}] [--owner OWNER] [--branch BRANCH]
+          [--committers [COMMITTERS ...]] [--pr-number PR_NUMBER] [--commit-message COMMIT_MESSAGE] [--commit-sha COMMIT_SHA]
+          [--target-path TARGET_PATH] [--sbom-file SBOM_FILE] [--files FILES] [--default-branch] [--pending-head]
+          [--generate-license] [--enable-debug] [--enable-json] [--enable-sarif] [--disable-overview] [--disable-security-issue]
           [--allow-unverified] [--ignore-commit-files] [--disable-blocking] [--scm SCM] [--timeout TIMEOUT]
           [--exclude-license-details]
 ````
@@ -77,7 +77,7 @@ If you don't want to provide the Socket API Token every time then you can use th
 
 ## Development
 
-This project uses `pyproject.toml` as the primary dependency specification. 
+This project uses `pyproject.toml` as the primary dependency specification.
 
 ### Development Workflows
 
@@ -132,8 +132,3 @@ Implementation targets:
 ### Environment Variables
 
 - `SOCKET_SDK_PATH`: Path to local socket-sdk-python repository (default: ../socket-sdk-python)
-
-### Running tests:
-
-#### Run all tests:
-```

socketsecurity/core/__init__.py

@@ -1,4 +1,5 @@
 import logging
+import os
 import sys
 import time
 from dataclasses import asdict
@@ -146,7 +147,8 @@ def find_files(path: str) -> List[str]:
                 glob_start = time.time()
                 glob_files = glob(file_path, recursive=True)
                 for glob_file in glob_files:
-                    if glob_file not in files:
+                    # Only add if it's a file, not a directory
+                    if glob_file not in files and os.path.isfile(glob_file):
                         files.add(glob_file)
                 glob_end = time.time()
                 glob_total_time = glob_end - glob_start