-
Notifications
You must be signed in to change notification settings - Fork 230
Closed as not planned
Labels
Description
Minimal working example
Starting a new Julia Session and running
using Turing
yields a
Info Given Turing was explicitly requested, output will be shown live
ERROR: LoadError: MethodError: no method matching init(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}}, ::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}; maxiters::Int64, maxtime::Int64)
The function `init` exists, but no method is defined for this combination of argument types.
Stacktrace:
[1] solve(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, @Kwargs{}}, ::Vararg{Any}; kwargs::@Kwargs{maxiters::Int64, maxtime::Int64})
@ CommonSolve ~/.julia/packages/CommonSolve/JfpfI/src/CommonSolve.jl:23
[2] (::OptimizationOptimJL.var"#solve_nonnegative_least_squares#solve_nonnegative_least_squares##0"{OptimizationOptimJL.var"#obj_f#obj_f##0"})(A::Matrix{Float64}, b::Vector{Float64}, solver::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}})
@ OptimizationOptimJL ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:491
[3] top-level scope
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:480
[4] macro expansion
@ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
[5] macro expansion
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:502 [inlined]
[6] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2996
[8] top-level scope
@ stdin:5
[9] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[11] include_string
@ ./loading.jl:2852 [inlined]
[12] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[13] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile OptimizationOptimJL [36348300-93cb-4f02-beb5-3c3902f8871e] to "/home/loman/.julia/compiled/v1.12/OptimizationOptimJL/jl_0rSBXU".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3283
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2651
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1282 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1274 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3854
[10] maybe_cachefile_lock
@ ./loading.jl:3851 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2637
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2465
[13] macro expansion
@ ./loading.jl:2393 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2358
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2334
[17] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:9
[18] include(mapexpr::Function, mod::Module, _path::String)
@ Base ./Base.jl:307
[19] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/Turing.jl:53
[20] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2996
[22] top-level scope
@ stdin:5
[23] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[25] include_string
@ ./loading.jl:2852 [inlined]
[26] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[27] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:1
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/Turing.jl:1
in expression starting at stdin:5
✗ OptimizationOptimJL
✗ Turing
✗ Turing → TuringOptimExt
Precompiling Turing finished.
0 dependencies successfully precompiled in 36 seconds. 309 already precompiled.
ERROR: The following 2 direct dependencies failed to precompile:
Turing
Failed to precompile Turing [fce5fe82-541a-59a6-adf8-730c64b5f9a0] to "/home/loman/.julia/compiled/v1.12/Turing/jl_4zSV1Q".
ERROR: LoadError: MethodError: no method matching init(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}}, ::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}; maxiters::Int64, maxtime::Int64)
The function `init` exists, but no method is defined for this combination of argument types.
Stacktrace:
[1] solve(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, @Kwargs{}}, ::Vararg{Any}; kwargs::@Kwargs{maxiters::Int64, maxtime::Int64})
@ CommonSolve ~/.julia/packages/CommonSolve/JfpfI/src/CommonSolve.jl:23
[2] (::OptimizationOptimJL.var"#solve_nonnegative_least_squares#solve_nonnegative_least_squares##0"{OptimizationOptimJL.var"#obj_f#obj_f##0"})(A::Matrix{Float64}, b::Vector{Float64}, solver::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}})
@ OptimizationOptimJL ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:491
[3] top-level scope
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:480
[4] macro expansion
@ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
[5] macro expansion
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:502 [inlined]
[6] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2996
[8] top-level scope
@ stdin:5
[9] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[11] include_string
@ ./loading.jl:2852 [inlined]
[12] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[13] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile OptimizationOptimJL [36348300-93cb-4f02-beb5-3c3902f8871e] to "/home/loman/.julia/compiled/v1.12/OptimizationOptimJL/jl_0rSBXU".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3283
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2651
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1282 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1274 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3854
[10] maybe_cachefile_lock
@ ./loading.jl:3851 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2637
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2465
[13] macro expansion
@ ./loading.jl:2393 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2358
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2334
[17] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:9
[18] include(mapexpr::Function, mod::Module, _path::String)
@ Base ./Base.jl:307
[19] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/Turing.jl:53
[20] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2996
[22] top-level scope
@ stdin:5
[23] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[25] include_string
@ ./loading.jl:2852 [inlined]
[26] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[27] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:1
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/Turing.jl:1
in expression starting at stdin:5
TuringOptimExt
Failed to precompile TuringOptimExt [cd2420fc-8d31-5c39-8d98-0365cfcf7d6e] to "/home/loman/.julia/compiled/v1.12/TuringOptimExt/jl_h2pwOz".
ERROR: LoadError: MethodError: no method matching init(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}}, ::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}; maxiters::Int64, maxtime::Int64)
The function `init` exists, but no method is defined for this combination of argument types.
Stacktrace:
[1] solve(::SciMLBase.OptimizationProblem{true, SciMLBase.OptimizationFunction{true, ADTypes.AutoForwardDiff{nothing, Nothing}, OptimizationOptimJL.var"#obj_f#obj_f##0", Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing}, Vector{Float64}, Tuple{Matrix{Float64}, Vector{Float64}}, Vector{Float64}, Vector{Float64}, Nothing, Nothing, Nothing, Nothing, @Kwargs{}}, ::Vararg{Any}; kwargs::@Kwargs{maxiters::Int64, maxtime::Int64})
@ CommonSolve ~/.julia/packages/CommonSolve/JfpfI/src/CommonSolve.jl:23
[2] (::OptimizationOptimJL.var"#solve_nonnegative_least_squares#solve_nonnegative_least_squares##0"{OptimizationOptimJL.var"#obj_f#obj_f##0"})(A::Matrix{Float64}, b::Vector{Float64}, solver::Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}})
@ OptimizationOptimJL ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:491
[3] top-level scope
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:480
[4] macro expansion
@ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
[5] macro expansion
@ ~/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:502 [inlined]
[6] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2996
[8] top-level scope
@ stdin:5
[9] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[11] include_string
@ ./loading.jl:2852 [inlined]
[12] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[13] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/OptimizationOptimJL/pe3SX/src/OptimizationOptimJL.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile OptimizationOptimJL [36348300-93cb-4f02-beb5-3c3902f8871e] to "/home/loman/.julia/compiled/v1.12/OptimizationOptimJL/jl_C8HTB6".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3283
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2651
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1282 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1274 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3854
[10] maybe_cachefile_lock
@ ./loading.jl:3851 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2637
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2465
[13] macro expansion
@ ./loading.jl:2393 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2358
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2334
[17] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:9
[18] include(mapexpr::Function, mod::Module, _path::String)
@ Base ./Base.jl:307
[19] top-level scope
@ ~/.julia/packages/Turing/ObWSF/src/Turing.jl:53
[20] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2996
[22] top-level scope
@ stdin:5
[23] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[25] include_string
@ ./loading.jl:2852 [inlined]
[26] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[27] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/optimisation/Optimisation.jl:1
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/src/Turing.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Turing [fce5fe82-541a-59a6-adf8-730c64b5f9a0] to "/home/loman/.julia/compiled/v1.12/Turing/jl_MqO1ts".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3283
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2651
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile /mi/share/scratch/loman/.julia/juliaup/julia-1.12.1+0.x64.linux.gnu/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1282 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1274 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3854
[10] maybe_cachefile_lock
@ ./loading.jl:3851 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2637
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2465
[13] macro expansion
@ ./loading.jl:2393 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2358
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2334
[17] top-level scope
@ ~/.julia/packages/Turing/ObWSF/ext/TuringOptimExt.jl:3
[18] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2996
[20] top-level scope
@ stdin:5
[21] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2842
[23] include_string
@ ./loading.jl:2852 [inlined]
[24] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[25] _start()
@ Base ./client.jl:550
in expression starting at /home/loman/.julia/packages/Turing/ObWSF/ext/TuringOptimExt.jl:1
in expression starting at stdin:5Description
Cannot rub using Turing
Julia version info
versioninfo()
Julia Version 1.12.1
Commit ba1e628ee49 (2025-10-17 13:02 UTC)
Build Info:
Official https://julialang.org release
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: 20 × 13th Gen Intel(R) Core(TM) i5-13500T
WORD_SIZE: 64
LLVM: libLLVM-18.1.7 (ORCJIT, alderlake)
GC: Built with stock GC
Threads: 10 default, 1 interactive, 10 GC (on 20 virtual cores)
Environment:
JULIA_EDITOR = code
JULIA_VSCODE_REPL = 1
JULIA_NUM_THREADS = 10
Manifest
]st --manifest
[47edcb42] ADTypes v1.18.0
[621f4979] AbstractFFTs v1.5.0
[80f14c24] AbstractMCMC v5.10.0
[7a57a42e] AbstractPPL v0.13.5
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.42
[79e6a3ab] Adapt v4.4.0
[0bf59076] AdvancedHMC v0.8.3
[5b7e9947] AdvancedMH v0.8.9
[576499cb] AdvancedPS v0.7.0
⌅ [b5ca4192] AdvancedVI v0.4.1
[66dad0bd] AliasTables v1.1.3
[dce04be8] ArgCheck v2.5.0
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.22.0
[4c555306] ArrayLayouts v1.12.0
[13072b0f] AxisAlgorithms v1.1.0
[39de3d68] AxisArrays v0.4.8
[198e06fe] BangBang v0.4.6
[9718e550] Baselet v0.1.1
[6e4b80f9] BenchmarkTools v1.6.3
[e2ed5e7c] Bijections v0.2.2
[76274a88] Bijectors v0.15.12
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[8e7c35d0] BlockArrays v1.9.1
[70df07ce] BracketingNonlinearSolve v1.6.0
[2a0fbf3d] CPUSummary v0.2.7
[336ed68f] CSV v0.10.15
[479239e8] Catalyst v15.0.8
[082447d4] ChainRules v1.72.6
[d360d2e6] ChainRulesCore v1.26.0
[0ca39b1e] Chairmarks v1.3.1
[9e997f8a] ChangesOfVariables v0.1.10
[fb6a15b2] CloseOpenIntervals v0.1.13
[944b1d66] CodecZlib v0.7.8
⌅ [861a8166] Combinatorics v1.0.2
[a80b9123] CommonMark v0.9.1
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.18.1
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.6.0
[adafc99b] CpuId v0.3.1
[a8cc5b0e] Crayons v4.1.1
[9a962f9c] DataAPI v1.16.0
[a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
[e2d170a0] DataValueInterfaces v1.0.0
[244e2a9f] DefineSingletons v0.1.2
[8bb1440f] DelimitedFiles v1.9.1
[b429d917] DensityInterface v0.4.0
[2b5f629d] DiffEqBase v6.190.2
[459566f4] DiffEqCallbacks v4.10.1
[77a26b50] DiffEqNoiseProcess v5.24.1
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[a0c0ee7d] DifferentiationInterface v0.7.10
[8d63f2c5] DispatchDoctor v0.4.26
[31c24e10] Distributions v0.25.122
[ced4e74d] DistributionsAD v0.6.58
[ffbed154] DocStringExtensions v0.9.5
[5b8099bc] DomainSets v0.7.16
[366bfd00] DynamicPPL v0.38.9
⌃ [7c1d4256] DynamicPolynomials v0.6.3
[06fc5a27] DynamicQuantities v1.10.0
[cad2338a] EllipticalSliceSampling v2.0.0
[4e289a0a] EnumX v1.0.5
[f151be2c] EnzymeCore v0.8.15
[d4d017d3] ExponentialUtilities v1.27.0
[e2ba6199] ExprTools v0.1.10
[55351af7] ExproniconLite v0.10.14
[7a1cc6ca] FFTW v1.10.0
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[442a2c76] FastGaussQuadrature v1.1.0
[a4df4552] FastPower v1.2.0
[48062228] FilePathsBase v0.9.24
[1a297f60] FillArrays v1.15.0
[64ca27bc] FindFirstFunctions v1.4.2
[6a86dc24] FiniteDiff v2.29.0
[1fa38f19] Format v1.3.7
⌃ [f6369f11] ForwardDiff v0.10.39
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
[d9f16b24] Functors v0.5.2
[46192b85] GPUArraysCore v0.2.0
[c145ed77] GenericSchur v0.5.6
[c27321d9] Glob v1.3.1
[86223c79] Graphs v1.13.1
[34004b35] HypergeometricFunctions v0.3.28
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[22cec73e] InitialValues v0.3.1
[842dd82b] InlineStrings v1.4.5
[18e54dd8] IntegerMathUtils v0.1.3
[a98d9a8b] Interpolations v0.16.2
[8197267c] IntervalSets v0.7.11
[3587e190] InverseFunctions v0.1.17
[41ab1584] InvertedIndices v1.3.1
[92d709cd] IrrationalConstants v0.2.6
[c8e1da08] IterTools v1.10.0
[82899510] IteratorInterfaceExtensions v1.0.0
[692b3bcd] JLLWrappers v1.7.1
[682c06a0] JSON v1.2.0
[ae98c720] Jieko v0.2.1
[98e50ef6] JuliaFormatter v2.2.0
⌅ [70703baa] JuliaSyntax v0.4.10
[ccbc3e58] JumpProcesses v9.19.1
[5ab0869b] KernelDensity v0.6.10
[ba0b0d4f] Krylov v0.10.2
[5be7bae1] LBFGSB v0.4.1
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.10
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.8.0
[1d6d02ad] LeftChildRightSiblingTrees v0.2.1
[6f1fad26] Libtask v0.9.10
[87fe0de2] LineSearch v0.1.4
[d3d80556] LineSearches v7.4.0
[7ed4a6bd] LinearSolve v3.46.1
[6fdf6af0] LogDensityProblems v2.2.0
[996a588d] LogDensityProblemsAD v1.13.1
[2ab3a3ac] LogExpFunctions v0.3.29
[e6f89c97] LoggingExtras v1.2.0
[c7f686f2] MCMCChains v7.6.0
[be115224] MCMCDiagnosticTools v0.3.15
[e80e1ace] MLJModelInterface v1.12.0
[d8e11817] MLStyle v0.4.17
[1914dd2f] MacroTools v0.5.16
[d125e4d3] ManualMemory v0.1.8
[dbb5928d] MappedArrays v0.4.2
[bb5d69b7] MaybeInplace v0.1.4
[128add7d] MicroCollections v0.2.0
[e1d29d7a] Missings v1.2.0
[dbe65cb8] MistyClosures v2.1.0
⌅ [961ee093] ModelingToolkit v9.84.0
[2e0e35c7] Moshi v0.3.7
[46d2c3a1] MuladdMacro v0.2.4
⌃ [102ac46a] MultivariatePolynomials v0.5.9
[d8a4904e] MutableArithmetics v1.6.7
[d41bc354] NLSolversBase v7.10.0
[77ba4419] NaNMath v1.1.3
[86f7a689] NamedArrays v0.10.5
[c020b1a1] NaturalSort v1.0.0
[8913a72c] NonlinearSolve v4.12.0
[be0214bd] NonlinearSolveBase v2.2.0
[5959db7a] NonlinearSolveFirstOrder v1.10.0
[9a2c21bd] NonlinearSolveQuasiNewton v1.11.0
[26075421] NonlinearSolveSpectralMethods v1.6.0
[6fe1bfb0] OffsetArrays v1.17.0
[429524aa] Optim v1.13.2
[3bd65402] Optimisers v0.4.6
⌅ [7f7a1694] Optimization v4.8.0
⌅ [bca83a33] OptimizationBase v2.11.0
⌃ [36348300] OptimizationOptimJL v0.4.5
[bac558e1] OrderedCollections v1.8.1
[1dea7af3] OrdinaryDiffEq v6.103.0
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0
[6ad6398a] OrdinaryDiffEqBDF v1.10.1
[bbf590c4] OrdinaryDiffEqCore v1.36.0
[50262376] OrdinaryDiffEqDefault v1.8.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.16.1
[9286f039] OrdinaryDiffEqExplicitRK v1.4.0
[e0540318] OrdinaryDiffEqExponentialRK v1.8.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.9.0
[5960d6e9] OrdinaryDiffEqFIRK v1.16.0
[101fe9f7] OrdinaryDiffEqFeagin v1.4.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0
[521117fe] OrdinaryDiffEqLinear v1.6.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.6.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.7.0
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0
[c9986a66] OrdinaryDiffEqNordsieck v1.4.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0
[5b33eab2] OrdinaryDiffEqPRK v1.4.0
[04162be5] OrdinaryDiffEqQPRK v1.4.0
[af6ede74] OrdinaryDiffEqRKN v1.5.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.18.1
[2d112036] OrdinaryDiffEqSDIRK v1.7.0
[669c94d9] OrdinaryDiffEqSSPRK v1.7.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.4.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0
[b1df2697] OrdinaryDiffEqTsit5 v1.5.0
[79d7bb75] OrdinaryDiffEqVerner v1.6.0
[90014a1f] PDMats v0.11.36
[d96e819e] Parameters v0.12.3
[69de0a69] Parsers v2.8.3
[e409e4f3] PoissonRandom v0.4.7
[f517fe37] Polyester v0.7.18
[1d0040c9] PolyesterWeave v0.2.2
[2dfb63ee] PooledArrays v1.4.3
[85a6dd25] PositiveFactorizations v0.2.4
[d236fae5] PreallocationTools v0.4.34
[aea7be01] PrecompileTools v1.3.3
[21216c6a] Preferences v1.5.0
[08abe8d2] PrettyTables v3.1.0
[27ebfcd6] Primes v0.5.7
[33c8b6b6] ProgressLogging v0.1.5
[92933f4c] ProgressMeter v1.11.0
[43287f4e] PtrArrays v1.3.0
[1fd47b50] QuadGK v2.11.2
[74087812] Random123 v1.7.1
[e6cf234a] RandomNumbers v1.6.0
[b3c3ace0] RangeArrays v0.3.2
[c84ed2f1] Ratios v0.4.5
[c1ae055f] RealDot v0.1.0
[3cdcf5f2] RecipesBase v1.3.4
[731186ca] RecursiveArrayTools v3.39.0
[189a3867] Reexport v1.2.2
[ae029012] Requires v1.3.1
[ae5879a3] ResettableStacks v1.1.1
[79098fc4] Rmath v0.9.0
[f2b01f46] Roots v2.2.10
[7e49a35a] RuntimeGeneratedFunctions v0.5.16
[9dfe8606] SCCNonlinearSolve v1.6.0
[94e857df] SIMDTypes v0.1.0
⌅ [26aad666] SSMProblems v0.5.2
[0bca4576] SciMLBase v2.124.0
[19f34311] SciMLJacobianOperators v0.1.11
[a6db7da4] SciMLLogging v1.4.0
[c0aeaf25] SciMLOperators v1.10.0
[431bcebd] SciMLPublic v1.0.0
[53ae85a6] SciMLStructures v1.7.0
[30f210dd] ScientificTypesBase v3.0.0
[91c51154] SentinelArrays v1.4.8
[efcf1570] Setfield v1.1.2
[727e6d20] SimpleNonlinearSolve v2.9.0
[699a6c99] SimpleTraits v0.9.5
[ce78b400] SimpleUnPack v1.1.0
[a2af1166] SortingAlgorithms v1.2.2
[9f842d2f] SparseConnectivityTracer v1.1.2
[dc90abb0] SparseInverseSubset v0.1.2
[0a514795] SparseMatrixColorings v0.4.23
[276daf66] SpecialFunctions v2.6.1
[171d559e] SplittablesBase v0.1.15
[aedffcd0] Static v1.3.1
[0d7ed370] StaticArrayInterface v1.8.0
[90137ffa] StaticArrays v1.9.15
[1e83bf80] StaticArraysCore v1.4.4
[64bff920] StatisticalTraits v3.5.0
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.1
[2913bbd2] StatsBase v0.34.7
[4c63d2b9] StatsFuns v1.5.2
[7792a7ef] StrideArraysCore v0.5.8
[892a3eda] StringManipulation v0.4.1
[09ab397b] StructArrays v0.7.2
[ec057cc2] StructUtils v2.5.1
[2efcf032] SymbolicIndexingInterface v0.3.46
⌃ [19f23fe9] SymbolicLimits v0.2.3
⌅ [d1185830] SymbolicUtils v3.32.0
⌅ [0c5d862f] Symbolics v6.57.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.1
[ed4db957] TaskLocalValues v0.1.3
[8ea1fca8] TermInterface v2.0.0
[5d786b92] TerminalLoggers v0.1.7
[1c621080] TestItems v1.0.0
[8290d209] ThreadingUtilities v0.5.5
[a759f4b9] TimerOutputs v0.5.29
[3bb67fe8] TranscodingStreams v0.11.3
[28d57a85] Transducers v0.4.85
[410a4b4d] Tricks v0.1.13
[781d530d] TruncatedStacktraces v1.4.0
[fce5fe82] Turing v0.41.0
[5c2747f8] URIs v1.6.1
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.25.1
[a7c27f48] Unityper v0.1.6
[ea10d353] WeakRefStrings v1.4.2
[efce3f68] WoodburyMatrices v1.0.0
[76eceee3] WorkerUtilities v1.6.1
[700de1a5] ZygoteRules v0.2.7
[f5851436] FFTW_jll v3.3.11+0
[61579ee1] Ghostscript_jll v9.55.1+0
[1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
[aacddb02] JpegTurbo_jll v3.1.3+0
[81d17ec3] L_BFGS_B_jll v3.0.1+0
[856f044c] MKL_jll v2025.2.0+0
[efe28fd5] OpenSpecFun_jll v0.5.6+0
[f50d1b31] Rmath_jll v0.5.1+0
[1317d2d5] oneTBB_jll v2022.0.0+1
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
[4af54fe1] LazyArtifacts v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.12.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.3.0
[44cfe95a] Pkg v1.12.0
[de0858da] Printf v1.11.0
[9abbd945] Profile v1.11.0
[3fa0cd96] REPL v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.12.0
[f489334b] StyledStrings v1.11.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.3.0+1
[deac9b47] LibCURL_jll v8.11.1+1
[e37daf67] LibGit2_jll v1.9.0+0
[29816b5a] LibSSH2_jll v1.11.3+1
[14a3606d] MozillaCACerts_jll v2025.5.20
[4536629a] OpenBLAS_jll v0.3.29+0
[05823500] OpenLibm_jll v0.8.7+0
[458c3c95] OpenSSL_jll v3.5.1+0
[bea87d4a] SuiteSparse_jll v7.8.3+2
[83775a58] Zlib_jll v1.3.1+2
[8e850b90] libblastrampoline_jll v5.15.0+0
[8e850ede] nghttp2_jll v1.64.0+1
[3f19e933] p7zip_jll v17.5.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`