From c90d512c8a3e8fe1db1dcd14e9030a512e6eb9e0 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Fri, 17 May 2024 21:56:36 +0530 Subject: [PATCH 01/25] LICENSE updated --- LICENSE | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/LICENSE b/LICENSE index 2b0ea03ff..538fafa27 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2018 The Turing Language +Copyright (c) 2018-2024, Hong Ge, the Turing language team Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal From 06688544aab192d21b668dcffaaf23a1788247e2 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Fri, 17 May 2024 23:01:01 +0530 Subject: [PATCH 02/25] renamed all tutorials to index.qmd --- tutorials/00-introduction/Manifest.toml | 2072 ------------ tutorials/00-introduction/Project.toml | 6 - .../{00_introduction.jmd => index.qmd} | 0 .../01-gaussian-mixture-model/Manifest.toml | 2072 ------------ .../01-gaussian-mixture-model/Project.toml | 7 - ...1_gaussian-mixture-model.jmd => index.qmd} | 0 .../02-logistic-regression/Manifest.toml | 2212 ------------- tutorials/02-logistic-regression/Project.toml | 15 - .../{02_logistic-regression.jmd => index.qmd} | 0 .../03-bayesian-neural-network/Manifest.toml | 2117 ------------ .../03-bayesian-neural-network/Project.toml | 10 - ..._bayesian-neural-network.jmd => index.qmd} | 0 .../04-hidden-markov-model/Manifest.toml | 2072 ------------ tutorials/04-hidden-markov-model/Project.toml | 5 - .../{04_hidden-markov-model.jmd => index.qmd} | 0 tutorials/05-linear-regression/Manifest.toml | 2245 ------------- tutorials/05-linear-regression/Project.toml | 10 - .../{05_linear-regression.jmd => index.qmd} | 0 .../06-infinite-mixture-model/Manifest.toml | 2002 ------------ .../06-infinite-mixture-model/Project.toml | 4 - ...6_infinite-mixture-model.jmd => index.qmd} | 0 tutorials/07-poisson-regression/Manifest.toml | 2212 ------------- tutorials/07-poisson-regression/Project.toml | 14 - .../{07_poisson-regression.jmd => index.qmd} | 0 .../Manifest.toml | 2195 ------------- .../Project.toml | 9 - ...mial-logistic-regression.jmd => index.qmd} | 0 .../09-variational-inference/Manifest.toml | 2352 -------------- .../09-variational-inference/Project.toml | 13 - ...09_variational-inference.jmd => index.qmd} | 0 .../Manifest.toml | 2833 ----------------- .../Project.toml | 8 - ...n-differential-equations.jmd => index.qmd} | 0 tutorials/11-probabilistic-pca/Manifest.toml | 2096 ------------ tutorials/11-probabilistic-pca/Project.toml | 9 - .../{11_probabilistic-pca.jmd => index.qmd} | 0 tutorials/12-gplvm/Manifest.toml | 2136 ------------- tutorials/12-gplvm/Project.toml | 11 - .../12-gplvm/{12_gplvm.jmd => index.qmd} | 0 .../13-seasonal-time-series/Manifest.toml | 2072 ------------ .../13-seasonal-time-series/Project.toml | 5 - ...{13_seasonal_time_series.jmd => index.qmd} | 0 tutorials/14-minituring/Manifest.toml | 1292 -------- tutorials/14-minituring/Project.toml | 8 - .../{14_minituring.jmd => index.qmd} | 0 tutorials/15-gaussian-processes/Manifest.toml | 2084 ------------ tutorials/15-gaussian-processes/Project.toml | 12 - .../{15_gaussian_processes.jmd => index.qmd} | 0 .../docs-00-getting-started/Manifest.toml | 2072 ------------ .../docs-00-getting-started/Project.toml | 3 - .../{00_getting-started.jmd => index.qmd} | 0 .../docs-01-contributing-guide/Manifest.toml | 2072 ------------ .../docs-01-contributing-guide/Project.toml | 3 - .../{contributing-guide.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 3 - ...contributing-style-guide.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 5 - .../{sampler-viz.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 3 - ..._implements_abstractmcmc.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 3 - .../{compiler.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 6 - .../{interface.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 3 - .../{variational_inference.jmd => index.qmd} | 0 tutorials/docs-08-using-turing/Manifest.toml | 2072 ------------ tutorials/docs-08-using-turing/Project.toml | 3 - .../{index.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 5 - .../{advanced.jmd => index.qmd} | 0 .../Manifest.toml | 2156 ------------- .../Project.toml | 4 - .../{autodiff.jmd => index.qmd} | 0 .../Manifest.toml | 2107 ------------ .../Project.toml | 4 - .../{dynamichmc.jmd => index.qmd} | 0 .../docs-12-using-turing-guide/Manifest.toml | 2229 ------------- .../docs-12-using-turing-guide/Project.toml | 6 - .../{using-turing-guide.jmd => index.qmd} | 0 .../Manifest.toml | 1298 -------- .../Project.toml | 5 - .../{performancetips.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 3 - .../{quick-start.jmd => index.qmd} | 0 .../Manifest.toml | 2072 ------------ .../Project.toml | 6 - .../{sampler-viz.jmd => index.qmd} | 0 .../Manifest.toml | 1466 --------- .../Project.toml | 8 - .../{external-samplers.jmd => index.qmd} | 0 99 files changed, 68403 deletions(-) delete mode 100644 tutorials/00-introduction/Manifest.toml delete mode 100644 tutorials/00-introduction/Project.toml rename tutorials/00-introduction/{00_introduction.jmd => index.qmd} (100%) delete mode 100644 tutorials/01-gaussian-mixture-model/Manifest.toml delete mode 100644 tutorials/01-gaussian-mixture-model/Project.toml rename tutorials/01-gaussian-mixture-model/{01_gaussian-mixture-model.jmd => index.qmd} (100%) delete mode 100644 tutorials/02-logistic-regression/Manifest.toml delete mode 100644 tutorials/02-logistic-regression/Project.toml rename tutorials/02-logistic-regression/{02_logistic-regression.jmd => index.qmd} (100%) delete mode 100644 tutorials/03-bayesian-neural-network/Manifest.toml delete mode 100644 tutorials/03-bayesian-neural-network/Project.toml rename tutorials/03-bayesian-neural-network/{03_bayesian-neural-network.jmd => index.qmd} (100%) delete mode 100644 tutorials/04-hidden-markov-model/Manifest.toml delete mode 100644 tutorials/04-hidden-markov-model/Project.toml rename tutorials/04-hidden-markov-model/{04_hidden-markov-model.jmd => index.qmd} (100%) delete mode 100644 tutorials/05-linear-regression/Manifest.toml delete mode 100644 tutorials/05-linear-regression/Project.toml rename tutorials/05-linear-regression/{05_linear-regression.jmd => index.qmd} (100%) delete mode 100644 tutorials/06-infinite-mixture-model/Manifest.toml delete mode 100644 tutorials/06-infinite-mixture-model/Project.toml rename tutorials/06-infinite-mixture-model/{06_infinite-mixture-model.jmd => index.qmd} (100%) delete mode 100644 tutorials/07-poisson-regression/Manifest.toml delete mode 100644 tutorials/07-poisson-regression/Project.toml rename tutorials/07-poisson-regression/{07_poisson-regression.jmd => index.qmd} (100%) delete mode 100644 tutorials/08-multinomial-logistic-regression/Manifest.toml delete mode 100644 tutorials/08-multinomial-logistic-regression/Project.toml rename tutorials/08-multinomial-logistic-regression/{08_multinomial-logistic-regression.jmd => index.qmd} (100%) delete mode 100644 tutorials/09-variational-inference/Manifest.toml delete mode 100644 tutorials/09-variational-inference/Project.toml rename tutorials/09-variational-inference/{09_variational-inference.jmd => index.qmd} (100%) delete mode 100644 tutorials/10-bayesian-differential-equations/Manifest.toml delete mode 100644 tutorials/10-bayesian-differential-equations/Project.toml rename tutorials/10-bayesian-differential-equations/{10_bayesian-differential-equations.jmd => index.qmd} (100%) delete mode 100644 tutorials/11-probabilistic-pca/Manifest.toml delete mode 100644 tutorials/11-probabilistic-pca/Project.toml rename tutorials/11-probabilistic-pca/{11_probabilistic-pca.jmd => index.qmd} (100%) delete mode 100644 tutorials/12-gplvm/Manifest.toml delete mode 100644 tutorials/12-gplvm/Project.toml rename tutorials/12-gplvm/{12_gplvm.jmd => index.qmd} (100%) delete mode 100644 tutorials/13-seasonal-time-series/Manifest.toml delete mode 100644 tutorials/13-seasonal-time-series/Project.toml rename tutorials/13-seasonal-time-series/{13_seasonal_time_series.jmd => index.qmd} (100%) delete mode 100644 tutorials/14-minituring/Manifest.toml delete mode 100644 tutorials/14-minituring/Project.toml rename tutorials/14-minituring/{14_minituring.jmd => index.qmd} (100%) delete mode 100644 tutorials/15-gaussian-processes/Manifest.toml delete mode 100644 tutorials/15-gaussian-processes/Project.toml rename tutorials/15-gaussian-processes/{15_gaussian_processes.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-00-getting-started/Manifest.toml delete mode 100644 tutorials/docs-00-getting-started/Project.toml rename tutorials/docs-00-getting-started/{00_getting-started.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-01-contributing-guide/Manifest.toml delete mode 100644 tutorials/docs-01-contributing-guide/Project.toml rename tutorials/docs-01-contributing-guide/{contributing-guide.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-02-contributing-style-guide/Manifest.toml delete mode 100644 tutorials/docs-02-contributing-style-guide/Project.toml rename tutorials/docs-02-contributing-style-guide/{contributing-style-guide.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-03-using-turing-sampler-viz/Manifest.toml delete mode 100644 tutorials/docs-03-using-turing-sampler-viz/Project.toml rename tutorials/docs-03-using-turing-sampler-viz/{sampler-viz.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml delete mode 100644 tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml rename tutorials/docs-04-for-developers-abstractmcmc-turing/{how_turing_implements_abstractmcmc.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-05-for-developers-compiler/Manifest.toml delete mode 100644 tutorials/docs-05-for-developers-compiler/Project.toml rename tutorials/docs-05-for-developers-compiler/{compiler.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-06-for-developers-interface/Manifest.toml delete mode 100644 tutorials/docs-06-for-developers-interface/Project.toml rename tutorials/docs-06-for-developers-interface/{interface.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-07-for-developers-variational-inference/Manifest.toml delete mode 100644 tutorials/docs-07-for-developers-variational-inference/Project.toml rename tutorials/docs-07-for-developers-variational-inference/{variational_inference.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-08-using-turing/Manifest.toml delete mode 100644 tutorials/docs-08-using-turing/Project.toml rename tutorials/docs-08-using-turing/{index.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-09-using-turing-advanced/Manifest.toml delete mode 100644 tutorials/docs-09-using-turing-advanced/Project.toml rename tutorials/docs-09-using-turing-advanced/{advanced.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-10-using-turing-autodiff/Manifest.toml delete mode 100644 tutorials/docs-10-using-turing-autodiff/Project.toml rename tutorials/docs-10-using-turing-autodiff/{autodiff.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-11-using-turing-dynamichmc/Manifest.toml delete mode 100644 tutorials/docs-11-using-turing-dynamichmc/Project.toml rename tutorials/docs-11-using-turing-dynamichmc/{dynamichmc.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-12-using-turing-guide/Manifest.toml delete mode 100644 tutorials/docs-12-using-turing-guide/Project.toml rename tutorials/docs-12-using-turing-guide/{using-turing-guide.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-13-using-turing-performance-tips/Manifest.toml delete mode 100644 tutorials/docs-13-using-turing-performance-tips/Project.toml rename tutorials/docs-13-using-turing-performance-tips/{performancetips.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-14-using-turing-quick-start/Manifest.toml delete mode 100644 tutorials/docs-14-using-turing-quick-start/Project.toml rename tutorials/docs-14-using-turing-quick-start/{quick-start.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-15-using-turing-sampler-viz/Manifest.toml delete mode 100644 tutorials/docs-15-using-turing-sampler-viz/Project.toml rename tutorials/docs-15-using-turing-sampler-viz/{sampler-viz.jmd => index.qmd} (100%) delete mode 100644 tutorials/docs-16-using-turing-external-samplers/Manifest.toml delete mode 100644 tutorials/docs-16-using-turing-external-samplers/Project.toml rename tutorials/docs-16-using-turing-external-samplers/{external-samplers.jmd => index.qmd} (100%) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml deleted file mode 100644 index 38b21a4b2..000000000 --- a/tutorials/00-introduction/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/00-introduction/Project.toml b/tutorials/00-introduction/Project.toml deleted file mode 100644 index 18de91042..000000000 --- a/tutorials/00-introduction/Project.toml +++ /dev/null @@ -1,6 +0,0 @@ -[deps] -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/00-introduction/00_introduction.jmd b/tutorials/00-introduction/index.qmd similarity index 100% rename from tutorials/00-introduction/00_introduction.jmd rename to tutorials/00-introduction/index.qmd diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml deleted file mode 100644 index 7e11ea98b..000000000 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/01-gaussian-mixture-model/Project.toml b/tutorials/01-gaussian-mixture-model/Project.toml deleted file mode 100644 index c487e60c5..000000000 --- a/tutorials/01-gaussian-mixture-model/Project.toml +++ /dev/null @@ -1,7 +0,0 @@ -[deps] -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/01-gaussian-mixture-model/01_gaussian-mixture-model.jmd b/tutorials/01-gaussian-mixture-model/index.qmd similarity index 100% rename from tutorials/01-gaussian-mixture-model/01_gaussian-mixture-model.jmd rename to tutorials/01-gaussian-mixture-model/index.qmd diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml deleted file mode 100644 index 0485ee814..000000000 --- a/tutorials/02-logistic-regression/Manifest.toml +++ /dev/null @@ -1,2212 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "e25051313213ab9b94363dd6ade21d1145ab1ba1" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LearnBase]] -deps = ["LinearAlgebra", "StatsBase"] -git-tree-sha1 = "47e6f4623c1db88570c7a7fa66c6528b92ba4725" -uuid = "7f8f8fb0-2700-5f03-b4bd-41f8cfc144b6" -version = "0.3.0" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLDataPattern]] -deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] -git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" -uuid = "9920b226-0b2a-5f5f-9153-9aa70a013f8b" -version = "0.5.4" - -[[deps.MLDataUtils]] -deps = ["DataFrames", "DelimitedFiles", "LearnBase", "MLDataPattern", "MLLabelUtils", "Statistics", "StatsBase"] -git-tree-sha1 = "ee54803aea12b9c8ee972e78ece11ac6023715e6" -uuid = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -version = "0.5.4" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLLabelUtils]] -deps = ["LearnBase", "MappedArrays", "StatsBase"] -git-tree-sha1 = "fd75d4b0c4016e047bbb6263eecf7ae3891af522" -uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" -version = "0.5.7" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShiftedArrays]] -git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" -uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "2.0.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/02-logistic-regression/Project.toml b/tutorials/02-logistic-regression/Project.toml deleted file mode 100644 index ac0b3e71e..000000000 --- a/tutorials/02-logistic-regression/Project.toml +++ /dev/null @@ -1,15 +0,0 @@ -[deps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/02-logistic-regression/02_logistic-regression.jmd b/tutorials/02-logistic-regression/index.qmd similarity index 100% rename from tutorials/02-logistic-regression/02_logistic-regression.jmd rename to tutorials/02-logistic-regression/index.qmd diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml deleted file mode 100644 index 57e2e897d..000000000 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ /dev/null @@ -1,2117 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "7168816b9d483eadc3c00203d16ab269e5dc5bfd" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.ContextVariablesX]] -deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" -uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.3" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FLoops]] -deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] -git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" -uuid = "cc61a311-1640-44b5-9fba-1b764f453329" -version = "0.2.1" - -[[deps.FLoopsBase]] -deps = ["ContextVariablesX"] -git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" -uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" -version = "0.1.1" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Flux]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "b97c3fc4f3628b8835d83789b09382961a254da4" -uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.6" - - [deps.Flux.extensions] - FluxAMDGPUExt = "AMDGPU" - FluxCUDAExt = "CUDA" - FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] - FluxMetalExt = "Metal" - - [deps.Flux.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" -uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLStyle]] -git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.17" - -[[deps.MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" -uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NameResolution]] -deps = ["PrettyPrint"] -git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" -uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" -version = "0.1.5" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" -uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.4" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyPrint]] -git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" -uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" -version = "0.2.0" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShowCases]] -git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" -uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" -version = "0.1.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" - - [deps.Zygote.extensions] - ZygoteColorsExt = "Colors" - ZygoteDistancesExt = "Distances" - ZygoteTrackerExt = "Tracker" - - [deps.Zygote.weakdeps] - Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" - Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/03-bayesian-neural-network/Project.toml b/tutorials/03-bayesian-neural-network/Project.toml deleted file mode 100644 index 35001f3ec..000000000 --- a/tutorials/03-bayesian-neural-network/Project.toml +++ /dev/null @@ -1,10 +0,0 @@ -[deps] -AdvancedVI = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/03-bayesian-neural-network/03_bayesian-neural-network.jmd b/tutorials/03-bayesian-neural-network/index.qmd similarity index 100% rename from tutorials/03-bayesian-neural-network/03_bayesian-neural-network.jmd rename to tutorials/03-bayesian-neural-network/index.qmd diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml deleted file mode 100644 index be8f1d5cc..000000000 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "22534c8a743be6cd79b588fb185e78dd8614a6d2" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/04-hidden-markov-model/Project.toml b/tutorials/04-hidden-markov-model/Project.toml deleted file mode 100644 index 2704e9aad..000000000 --- a/tutorials/04-hidden-markov-model/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/04-hidden-markov-model/04_hidden-markov-model.jmd b/tutorials/04-hidden-markov-model/index.qmd similarity index 100% rename from tutorials/04-hidden-markov-model/04_hidden-markov-model.jmd rename to tutorials/04-hidden-markov-model/index.qmd diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml deleted file mode 100644 index c72f859f0..000000000 --- a/tutorials/05-linear-regression/Manifest.toml +++ /dev/null @@ -1,2245 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.ContextVariablesX]] -deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" -uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.3" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FLoops]] -deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] -git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" -uuid = "cc61a311-1640-44b5-9fba-1b764f453329" -version = "0.2.1" - -[[deps.FLoopsBase]] -deps = ["ContextVariablesX"] -git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" -uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" -version = "0.1.1" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLStyle]] -git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.17" - -[[deps.MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" -uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NameResolution]] -deps = ["PrettyPrint"] -git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" -uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" -version = "0.1.5" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyPrint]] -git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" -uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" -version = "0.2.0" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShiftedArrays]] -git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" -uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "2.0.0" - -[[deps.ShowCases]] -git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" -uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" -version = "0.1.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/05-linear-regression/Project.toml b/tutorials/05-linear-regression/Project.toml deleted file mode 100644 index e066be665..000000000 --- a/tutorials/05-linear-regression/Project.toml +++ /dev/null @@ -1,10 +0,0 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/05-linear-regression/05_linear-regression.jmd b/tutorials/05-linear-regression/index.qmd similarity index 100% rename from tutorials/05-linear-regression/05_linear-regression.jmd rename to tutorials/05-linear-regression/index.qmd diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml deleted file mode 100644 index a3650ad1f..000000000 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ /dev/null @@ -1,2002 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/06-infinite-mixture-model/Project.toml b/tutorials/06-infinite-mixture-model/Project.toml deleted file mode 100644 index dc3ff2545..000000000 --- a/tutorials/06-infinite-mixture-model/Project.toml +++ /dev/null @@ -1,4 +0,0 @@ -[deps] -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/06-infinite-mixture-model/06_infinite-mixture-model.jmd b/tutorials/06-infinite-mixture-model/index.qmd similarity index 100% rename from tutorials/06-infinite-mixture-model/06_infinite-mixture-model.jmd rename to tutorials/06-infinite-mixture-model/index.qmd diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml deleted file mode 100644 index 4c986bc0a..000000000 --- a/tutorials/07-poisson-regression/Manifest.toml +++ /dev/null @@ -1,2212 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "0517af877736a403423fea5e79af9a2622617f81" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LearnBase]] -deps = ["LinearAlgebra", "StatsBase"] -git-tree-sha1 = "47e6f4623c1db88570c7a7fa66c6528b92ba4725" -uuid = "7f8f8fb0-2700-5f03-b4bd-41f8cfc144b6" -version = "0.3.0" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLDataPattern]] -deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] -git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" -uuid = "9920b226-0b2a-5f5f-9153-9aa70a013f8b" -version = "0.5.4" - -[[deps.MLDataUtils]] -deps = ["DataFrames", "DelimitedFiles", "LearnBase", "MLDataPattern", "MLLabelUtils", "Statistics", "StatsBase"] -git-tree-sha1 = "ee54803aea12b9c8ee972e78ece11ac6023715e6" -uuid = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -version = "0.5.4" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLLabelUtils]] -deps = ["LearnBase", "MappedArrays", "StatsBase"] -git-tree-sha1 = "fd75d4b0c4016e047bbb6263eecf7ae3891af522" -uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" -version = "0.5.7" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShiftedArrays]] -git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" -uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "2.0.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/07-poisson-regression/Project.toml b/tutorials/07-poisson-regression/Project.toml deleted file mode 100644 index 51d942647..000000000 --- a/tutorials/07-poisson-regression/Project.toml +++ /dev/null @@ -1,14 +0,0 @@ -[deps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/07-poisson-regression/07_poisson-regression.jmd b/tutorials/07-poisson-regression/index.qmd similarity index 100% rename from tutorials/07-poisson-regression/07_poisson-regression.jmd rename to tutorials/07-poisson-regression/index.qmd diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml deleted file mode 100644 index c55a16b30..000000000 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ /dev/null @@ -1,2195 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LearnBase]] -deps = ["LinearAlgebra", "StatsBase"] -git-tree-sha1 = "47e6f4623c1db88570c7a7fa66c6528b92ba4725" -uuid = "7f8f8fb0-2700-5f03-b4bd-41f8cfc144b6" -version = "0.3.0" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLDataPattern]] -deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] -git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" -uuid = "9920b226-0b2a-5f5f-9153-9aa70a013f8b" -version = "0.5.4" - -[[deps.MLDataUtils]] -deps = ["DataFrames", "DelimitedFiles", "LearnBase", "MLDataPattern", "MLLabelUtils", "Statistics", "StatsBase"] -git-tree-sha1 = "ee54803aea12b9c8ee972e78ece11ac6023715e6" -uuid = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -version = "0.5.4" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLLabelUtils]] -deps = ["LearnBase", "MappedArrays", "StatsBase"] -git-tree-sha1 = "fd75d4b0c4016e047bbb6263eecf7ae3891af522" -uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" -version = "0.5.7" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/08-multinomial-logistic-regression/Project.toml b/tutorials/08-multinomial-logistic-regression/Project.toml deleted file mode 100644 index 4eacbe29f..000000000 --- a/tutorials/08-multinomial-logistic-regression/Project.toml +++ /dev/null @@ -1,9 +0,0 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/08-multinomial-logistic-regression/08_multinomial-logistic-regression.jmd b/tutorials/08-multinomial-logistic-regression/index.qmd similarity index 100% rename from tutorials/08-multinomial-logistic-regression/08_multinomial-logistic-regression.jmd rename to tutorials/08-multinomial-logistic-regression/index.qmd diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml deleted file mode 100644 index a8831e57e..000000000 --- a/tutorials/09-variational-inference/Manifest.toml +++ /dev/null @@ -1,2352 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "a797d593ed4ed55905ba6ad67df963533cfbc8d6" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "3ee12062466a73b5f9c04113375e4934f174bc2c" -uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.3" - - [deps.ComponentArrays.extensions] - ComponentArraysAdaptExt = "Adapt" - ComponentArraysConstructionBaseExt = "ConstructionBase" - ComponentArraysGPUArraysExt = "GPUArrays" - ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" - ComponentArraysReverseDiffExt = "ReverseDiff" - ComponentArraysSciMLBaseExt = "SciMLBase" - ComponentArraysTrackerExt = "Tracker" - ComponentArraysZygoteExt = "Zygote" - - [deps.ComponentArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.ContextVariablesX]] -deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" -uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.3" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FLoops]] -deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] -git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" -uuid = "cc61a311-1640-44b5-9fba-1b764f453329" -version = "0.2.1" - -[[deps.FLoopsBase]] -deps = ["ContextVariablesX"] -git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" -uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" -version = "0.1.1" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Flux]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "b97c3fc4f3628b8835d83789b09382961a254da4" -uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.6" - - [deps.Flux.extensions] - FluxAMDGPUExt = "AMDGPU" - FluxCUDAExt = "CUDA" - FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] - FluxMetalExt = "Metal" - - [deps.Flux.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GLM]] -deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" -uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.0" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" -uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" - -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MLStyle]] -git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.17" - -[[deps.MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" -uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NameResolution]] -deps = ["PrettyPrint"] -git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" -uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" -version = "0.1.5" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" -uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.4" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.PackageExtensionCompat]] -git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" -uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" -version = "1.0.2" -weakdeps = ["Requires", "TOML"] - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyPrint]] -git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" -uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" -version = "0.2.0" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.ShiftedArrays]] -git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" -uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" -version = "2.0.0" - -[[deps.ShowCases]] -git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" -uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" -version = "0.1.0" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.8" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsModels]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" -uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" -weakdeps = ["Colors", "Distances", "Tracker"] - - [deps.Zygote.extensions] - ZygoteColorsExt = "Colors" - ZygoteDistancesExt = "Distances" - ZygoteTrackerExt = "Tracker" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/09-variational-inference/Project.toml b/tutorials/09-variational-inference/Project.toml deleted file mode 100644 index a0ce2c3e4..000000000 --- a/tutorials/09-variational-inference/Project.toml +++ /dev/null @@ -1,13 +0,0 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" diff --git a/tutorials/09-variational-inference/09_variational-inference.jmd b/tutorials/09-variational-inference/index.qmd similarity index 100% rename from tutorials/09-variational-inference/09_variational-inference.jmd rename to tutorials/09-variational-inference/index.qmd diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml deleted file mode 100644 index 2e7bc2723..000000000 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ /dev/null @@ -1,2833 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.10.1" -manifest_format = "2.0" -project_hash = "1cf8b95959ac0235940751347a1e8ff1481cfa25" - -[[deps.ADTypes]] -git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.6" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.2.0" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.7.0" - -[[deps.AbstractTrees]] -git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.5" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.35" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.1" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.1" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.8.1" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] -git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.5.4" -weakdeps = ["Libtask"] - - [deps.AdvancedPS.extensions] - AdvancedPSLibtaskExt = "Libtask" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArnoldiMethod]] -deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" -uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "64d582bcb9c93ac741234789eeb4f16812413efb" -uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.6.0" -weakdeps = ["SparseArrays"] - - [deps.ArrayLayouts.extensions] - ArrayLayoutsSparseArraysExt = "SparseArrays" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.1.0" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "931f3f49902e9b6b527fd7cd02d1cd7b4a84264c" -uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.5.0" -weakdeps = ["SparseArrays"] - - [deps.BandedMatrices.extensions] - BandedMatricesSparseArraysExt = "SparseArrays" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.40" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.BenchmarkTools]] -deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" -uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.5.0" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.8" -weakdeps = ["DistributionsAD", "ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker", "Zygote"] - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - -[[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" - -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" - -[[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "ForwardDiff", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "Tricks", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "3ff968887be48760b0e9e8650c2d05c96cdea9d8" -uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.6.3" - - [deps.BoundaryValueDiffEq.extensions] - BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" - BoundaryValueDiffEqOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.BoundaryValueDiffEq.weakdeps] - ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" - -[[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" - -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.4" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.Cassette]] -git-tree-sha1 = "0970356c3bb9113309c74c27c87083cf9c73880a" -uuid = "7057c7e9-c182-5462-911a-8362d720325c" -version = "0.3.13" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.63.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.23.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.12" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.7" - -[[deps.CodecBzip2]] -deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] -git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" -uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" -version = "0.8.2" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["TOML", "UUIDs"] -git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.14.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.1.0+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcreteStructs]] -git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" -uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" -version = "0.2.3" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.3.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.16.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.17" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "10c892dd12113644bd6c7fae520691f8a78032dc" -uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.47.0" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffEqBase]] -deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "4b525a4fb824c7c3a98d5d1b18fbaee239dfed7c" -uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.147.2" - - [deps.DiffEqBase.extensions] - DiffEqBaseChainRulesCoreExt = "ChainRulesCore" - DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] - DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" - DiffEqBaseMPIExt = "MPI" - DiffEqBaseMeasurementsExt = "Measurements" - DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" - DiffEqBaseReverseDiffExt = "ReverseDiff" - DiffEqBaseTrackerExt = "Tracker" - DiffEqBaseUnitfulExt = "Unitful" - - [deps.DiffEqBase.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "ee954c8b9d348b7a8a6aec5f28288bf5adecd4ee" -uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.37.0" -weakdeps = ["OrdinaryDiffEq", "Sundials"] - -[[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "3d440ee25f48e5c7b08af71f2997daca45bf6856" -uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.20.1" -weakdeps = ["ReverseDiff"] - - [deps.DiffEqNoiseProcess.extensions] - DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.DifferentialEquations]] -deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "8864b6a953eeba7890d23258aca468d90ca73fd6" -uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.12.0" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.107" -weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - DistributionsTestExt = "Test" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.54" -weakdeps = ["ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker"] - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "0d4bfed4de78224797539954341354a36dedbac1" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.8" -weakdeps = ["ChainRulesCore", "EnzymeCore", "ForwardDiff", "MCMCChains", "ReverseDiff", "ZygoteRules"] - - [deps.DynamicPPL.extensions] - DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] - DynamicPPLEnzymeCoreExt = ["EnzymeCore"] - DynamicPPLForwardDiffExt = ["ForwardDiff"] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - DynamicPPLReverseDiffExt = ["ReverseDiff"] - DynamicPPLZygoteRulesExt = ["ZygoteRules"] - -[[deps.EllipsisNotation]] -deps = ["StaticArrayInterface"] -git-tree-sha1 = "3507300d4343e8e4ad080ad24e335274c2e297a9" -uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -version = "1.8.0" - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "2.0.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.Enzyme]] -deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] -git-tree-sha1 = "16b3a7980cdbf6f036ab46f7e9131afb273f1231" -uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.11.17" -weakdeps = ["SpecialFunctions"] - - [deps.Enzyme.extensions] - EnzymeSpecialFunctionsExt = "SpecialFunctions" - -[[deps.EnzymeCore]] -git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" -uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.5" -weakdeps = ["Adapt"] - - [deps.EnzymeCore.extensions] - AdaptExt = "Adapt" - -[[deps.Enzyme_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "32d418c804279c60dd38ac7868126696f3205a4f" -uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.102+0" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "8e18940a5ba7f4ddb41fe2b79b6acaac50880a86" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.26.1" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FastAlmostBandedMatrices]] -deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] -git-tree-sha1 = "178316d87f883f0702e79d9c83a8049484c9f619" -uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" -version = "0.1.0" - -[[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" -uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.8" - -[[deps.FastClosures]] -git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" -uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" -version = "0.3.2" - -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "0a59c7d1002f3131de53dc4568a47d15a44daef7" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.2" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysPDMatsExt = "PDMats" - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.22.0" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.3" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionProperties]] -deps = ["Cassette", "DiffRules"] -git-tree-sha1 = "663f3171531d52f9a68c089aa89de282001b3d5b" -uuid = "f62d2435-5019-4c03-9749-2d4c77af0cbc" -version = "0.1.0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.7" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.9+0" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "47e4686ec18a9620850bad110b79966132f14283" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.0.2" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" - -[[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "a846f297ce9d09ccba02ead0cae70690e072a119" -uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.25.0" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.2" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.2+0" - -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.3" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" -uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.9.0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.2" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.16" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd" -uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.12" - -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - -[[deps.Inflate]] -git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" -uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.4" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.2+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" -weakdeps = ["Unitful"] - - [deps.Interpolations.extensions] - InterpolationsUnitfulExt = "Unitful" - -[[deps.IntervalSets]] -git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.10" -weakdeps = ["Random", "RecipesBase", "Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsRandomExt = "Random" - IntervalSetsRecipesBaseExt = "RecipesBase" - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.10.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.2+0" - -[[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] -git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" -uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.10.1" -weakdeps = ["FastBroadcast"] - - [deps.JumpProcesses.extensions] - JumpProcessFastBroadcastExt = "FastBroadcast" - -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.17" -weakdeps = ["EnzymeCore"] - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.8" - -[[deps.Krylov]] -deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" -uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.5" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.0" - - [deps.LLVM.extensions] - BFloat16sExt = "BFloat16s" - - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" - -[[deps.LRUCache]] -git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.6.1" -weakdeps = ["Serialization"] - - [deps.LRUCache.extensions] - SerializationExt = ["Serialization"] - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.15" - -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] -git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "1.8.3" -weakdeps = ["StaticArrays"] - - [deps.LazyArrays.extensions] - LazyArraysStaticArraysExt = "StaticArrays" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LevyArea]] -deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" -uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" -version = "1.0.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.4" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] -uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.0+1" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.39.3+0" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2cc25978eb8efda63ee5786f2ed72c35a711b61" -uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.26.0" - - [deps.LinearSolve.extensions] - LinearSolveBandedMatricesExt = "BandedMatrices" - LinearSolveBlockDiagonalsExt = "BlockDiagonals" - LinearSolveCUDAExt = "CUDA" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] - LinearSolveHYPREExt = "HYPRE" - LinearSolveIterativeSolversExt = "IterativeSolvers" - LinearSolveKernelAbstractionsExt = "KernelAbstractions" - LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" - - [deps.LinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" - HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" - IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" - KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" - KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.7.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADADTypesExt = "ADTypes" - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.27" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.166" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.6" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.10" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.0.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.5" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.13" - -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MathOptInterface]] -deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f" -uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.27.0" - -[[deps.MatrixFactorizations]] -deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" -uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "2.1.0" - -[[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "a85c6a98c9e5a2a7046bc1bb89f28a3241e1de4d" -uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.1" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" - -[[deps.MuladdMacro]] -git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" -uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" -version = "0.2.4" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.MutableArithmetics]] -deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "302fd161eb1c439e4115b51ae456da4e9984f130" -uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.1" - -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - -[[deps.NLsolve]] -deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] -git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" -uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" -version = "4.5.1" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.12" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.16" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"] -git-tree-sha1 = "f409959245f04c8004bd3711915d71c93b2043f7" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.7.3" - - [deps.NonlinearSolve.extensions] - NonlinearSolveBandedMatricesExt = "BandedMatrices" - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = "NLsolve" - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" - - [deps.NonlinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.ObjectFile]] -deps = ["Reexport", "StructIO"] -git-tree-sha1 = "195e0a19842f678dd3473ceafbe9d82dfacc583c" -uuid = "d8793406-e978-5875-9003-1fc021f44a92" -version = "0.4.1" - -[[deps.Observables]] -git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.5" - -[[deps.OffsetArrays]] -git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.13.0" -weakdeps = ["Adapt"] - - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+2" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "d024bfb56144d947d4fafcd9cb5cafbe3410b133" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.9.2" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.2" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.3" - -[[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "06e37c6c3d8cbddccc284ecf2b6d8b9b3a830f0f" -uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.73.1" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+1" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" - -[[deps.PackageExtensionCompat]] -git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" -uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" -version = "1.0.2" -weakdeps = ["Requires", "TOML"] - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.0" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.1" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PoissonRandom]] -deps = ["Random"] -git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" -uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.4" - -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.9" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.1" - -[[deps.PositiveFactorizations]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" -version = "0.2.4" - -[[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a" -uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.20" -weakdeps = ["ReverseDiff"] - - [deps.PreallocationTools.extensions] - PreallocationToolsReverseDiffExt = "ReverseDiff" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.2" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.10.1" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" - RecursiveArrayToolsForwardDiffExt = "ForwardDiff" - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.21" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ResettableStacks]] -deps = ["StaticArrays"] -git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" -uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" -version = "1.1.1" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] -git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.1.2" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.42" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.29.0" - - [deps.SciMLBase.extensions] - SciMLBaseChainRulesCoreExt = "ChainRulesCore" - SciMLBaseMakieExt = "Makie" - SciMLBasePartialFunctionsExt = "PartialFunctions" - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" - PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" - -[[deps.SciMLSensitivity]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SparseDiffTools", "StaticArrays", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote"] -git-tree-sha1 = "458d859240b6176c4610e79d5b75d40afa141f00" -uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.56.0" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "873a1bf90744acfa615e45cd5dddfd0ee89a094f" -uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.5.0" - - [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" - SimpleNonlinearSolveStaticArraysExt = "StaticArrays" - - [deps.SimpleNonlinearSolve.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" - -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.17.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.2" - -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" -weakdeps = ["ChainRulesCore", "Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysChainRulesCoreExt = "ChainRulesCore" - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.7" - -[[deps.SteadyStateDiffEq]] -deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"] -git-tree-sha1 = "a735fd5053724cf4de31c81b4e2cc429db844be5" -uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "2.0.1" - -[[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "97e5d0b7e5ec2e68eec6626af97c59e9f6b6c3d0" -uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.65.1" - -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.2" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] - - [deps.StructArrays.extensions] - StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" - StructArraysSparseArraysExt = "SparseArrays" - StructArraysStaticArraysExt = "StaticArrays" - -[[deps.StructIO]] -deps = ["Test"] -git-tree-sha1 = "010dc73c7146869c042b49adcdb6bf528c12e859" -uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" -version = "0.3.0" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" - -[[deps.Sundials]] -deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997" -uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.24.0" - -[[deps.Sundials_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] -git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" -uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.2+0" - -[[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.8" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" - -[[deps.TimerOutputs]] -deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" -uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.31" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.3" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.80" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.20" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.30.5" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.65" - -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.0+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.69" -weakdeps = ["Colors", "Distances", "Tracker"] - - [deps.Zygote.extensions] - ZygoteColorsExt = "Colors" - ZygoteDistancesExt = "Distances" - ZygoteTrackerExt = "Tracker" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+1" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/10-bayesian-differential-equations/Project.toml b/tutorials/10-bayesian-differential-equations/Project.toml deleted file mode 100644 index b3c9af768..000000000 --- a/tutorials/10-bayesian-differential-equations/Project.toml +++ /dev/null @@ -1,8 +0,0 @@ -[deps] -DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" diff --git a/tutorials/10-bayesian-differential-equations/10_bayesian-differential-equations.jmd b/tutorials/10-bayesian-differential-equations/index.qmd similarity index 100% rename from tutorials/10-bayesian-differential-equations/10_bayesian-differential-equations.jmd rename to tutorials/10-bayesian-differential-equations/index.qmd diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml deleted file mode 100644 index 54d4e80e3..000000000 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ /dev/null @@ -1,2096 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/11-probabilistic-pca/Project.toml b/tutorials/11-probabilistic-pca/Project.toml deleted file mode 100644 index 4f0bfa2bf..000000000 --- a/tutorials/11-probabilistic-pca/Project.toml +++ /dev/null @@ -1,9 +0,0 @@ -[deps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/11-probabilistic-pca/11_probabilistic-pca.jmd b/tutorials/11-probabilistic-pca/index.qmd similarity index 100% rename from tutorials/11-probabilistic-pca/11_probabilistic-pca.jmd rename to tutorials/11-probabilistic-pca/index.qmd diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml deleted file mode 100644 index 808b6738f..000000000 --- a/tutorials/12-gplvm/Manifest.toml +++ /dev/null @@ -1,2136 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractGPs]] -deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a" -uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" -version = "0.5.19" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" -uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" - - [deps.CategoricalArrays.extensions] - CategoricalArraysJSONExt = "JSON" - CategoricalArraysRecipesBaseExt = "RecipesBase" - CategoricalArraysSentinelArraysExt = "SentinelArrays" - CategoricalArraysStructTypesExt = "StructTypes" - - [deps.CategoricalArrays.weakdeps] - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" - StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileIO]] -deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" -uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.KernelFunctions]] -deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" -uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.RData]] -deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" -uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" - -[[deps.RDatasets]] -deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" -uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/12-gplvm/Project.toml b/tutorials/12-gplvm/Project.toml deleted file mode 100644 index 100582955..000000000 --- a/tutorials/12-gplvm/Project.toml +++ /dev/null @@ -1,11 +0,0 @@ -[deps] -AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/12-gplvm/12_gplvm.jmd b/tutorials/12-gplvm/index.qmd similarity index 100% rename from tutorials/12-gplvm/12_gplvm.jmd rename to tutorials/12-gplvm/index.qmd diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml deleted file mode 100644 index 03b27bc5a..000000000 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "8465c369abb7f6ef05a55c9b93c53a6097762489" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/13-seasonal-time-series/Project.toml b/tutorials/13-seasonal-time-series/Project.toml deleted file mode 100644 index 7779b2b21..000000000 --- a/tutorials/13-seasonal-time-series/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/13-seasonal-time-series/13_seasonal_time_series.jmd b/tutorials/13-seasonal-time-series/index.qmd similarity index 100% rename from tutorials/13-seasonal-time-series/13_seasonal_time_series.jmd rename to tutorials/13-seasonal-time-series/index.qmd diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml deleted file mode 100644 index 9868d2594..000000000 --- a/tutorials/14-minituring/Manifest.toml +++ /dev/null @@ -1,1292 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - - [deps.Ratios.weakdeps] - FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/tutorials/14-minituring/Project.toml b/tutorials/14-minituring/Project.toml deleted file mode 100644 index 01de61277..000000000 --- a/tutorials/14-minituring/Project.toml +++ /dev/null @@ -1,8 +0,0 @@ -[deps] -AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/14-minituring/14_minituring.jmd b/tutorials/14-minituring/index.qmd similarity index 100% rename from tutorials/14-minituring/14_minituring.jmd rename to tutorials/14-minituring/index.qmd diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml deleted file mode 100644 index 4beb82d5d..000000000 --- a/tutorials/15-gaussian-processes/Manifest.toml +++ /dev/null @@ -1,2084 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "6b58e2d02b44e64312fc865e24484ed638995104" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractGPs]] -deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a" -uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" -version = "0.5.19" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataDeps]] -deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] -git-tree-sha1 = "6e8d74545d34528c30ccd3fa0f3c00f8ed49584c" -uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -version = "0.7.11" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.21" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.KernelFunctions]] -deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" -uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/15-gaussian-processes/Project.toml b/tutorials/15-gaussian-processes/Project.toml deleted file mode 100644 index 5d1cb1b83..000000000 --- a/tutorials/15-gaussian-processes/Project.toml +++ /dev/null @@ -1,12 +0,0 @@ -[deps] -AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" -CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/15-gaussian-processes/15_gaussian_processes.jmd b/tutorials/15-gaussian-processes/index.qmd similarity index 100% rename from tutorials/15-gaussian-processes/15_gaussian_processes.jmd rename to tutorials/15-gaussian-processes/index.qmd diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-00-getting-started/Project.toml b/tutorials/docs-00-getting-started/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-00-getting-started/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-00-getting-started/00_getting-started.jmd b/tutorials/docs-00-getting-started/index.qmd similarity index 100% rename from tutorials/docs-00-getting-started/00_getting-started.jmd rename to tutorials/docs-00-getting-started/index.qmd diff --git a/tutorials/docs-01-contributing-guide/Manifest.toml b/tutorials/docs-01-contributing-guide/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-01-contributing-guide/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-01-contributing-guide/Project.toml b/tutorials/docs-01-contributing-guide/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-01-contributing-guide/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-01-contributing-guide/contributing-guide.jmd b/tutorials/docs-01-contributing-guide/index.qmd similarity index 100% rename from tutorials/docs-01-contributing-guide/contributing-guide.jmd rename to tutorials/docs-01-contributing-guide/index.qmd diff --git a/tutorials/docs-02-contributing-style-guide/Manifest.toml b/tutorials/docs-02-contributing-style-guide/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-02-contributing-style-guide/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-02-contributing-style-guide/Project.toml b/tutorials/docs-02-contributing-style-guide/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-02-contributing-style-guide/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-02-contributing-style-guide/contributing-style-guide.jmd b/tutorials/docs-02-contributing-style-guide/index.qmd similarity index 100% rename from tutorials/docs-02-contributing-style-guide/contributing-style-guide.jmd rename to tutorials/docs-02-contributing-style-guide/index.qmd diff --git a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml deleted file mode 100644 index 7ac49d08b..000000000 --- a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "5d3b8b9eb7683443ea8ae96e6fef297715042a31" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-03-using-turing-sampler-viz/Project.toml b/tutorials/docs-03-using-turing-sampler-viz/Project.toml deleted file mode 100644 index bda96a553..000000000 --- a/tutorials/docs-03-using-turing-sampler-viz/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-03-using-turing-sampler-viz/sampler-viz.jmd b/tutorials/docs-03-using-turing-sampler-viz/index.qmd similarity index 100% rename from tutorials/docs-03-using-turing-sampler-viz/sampler-viz.jmd rename to tutorials/docs-03-using-turing-sampler-viz/index.qmd diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.jmd b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd similarity index 100% rename from tutorials/docs-04-for-developers-abstractmcmc-turing/how_turing_implements_abstractmcmc.jmd rename to tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd diff --git a/tutorials/docs-05-for-developers-compiler/Manifest.toml b/tutorials/docs-05-for-developers-compiler/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-05-for-developers-compiler/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-05-for-developers-compiler/Project.toml b/tutorials/docs-05-for-developers-compiler/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-05-for-developers-compiler/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-05-for-developers-compiler/compiler.jmd b/tutorials/docs-05-for-developers-compiler/index.qmd similarity index 100% rename from tutorials/docs-05-for-developers-compiler/compiler.jmd rename to tutorials/docs-05-for-developers-compiler/index.qmd diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml deleted file mode 100644 index 0d130560a..000000000 --- a/tutorials/docs-06-for-developers-interface/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "c2c40f5436f7cfb3d611046e88c24da658e5bf55" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-06-for-developers-interface/Project.toml b/tutorials/docs-06-for-developers-interface/Project.toml deleted file mode 100644 index 9edb03ec3..000000000 --- a/tutorials/docs-06-for-developers-interface/Project.toml +++ /dev/null @@ -1,6 +0,0 @@ -[deps] -AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-06-for-developers-interface/interface.jmd b/tutorials/docs-06-for-developers-interface/index.qmd similarity index 100% rename from tutorials/docs-06-for-developers-interface/interface.jmd rename to tutorials/docs-06-for-developers-interface/index.qmd diff --git a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-07-for-developers-variational-inference/Project.toml b/tutorials/docs-07-for-developers-variational-inference/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-07-for-developers-variational-inference/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-07-for-developers-variational-inference/variational_inference.jmd b/tutorials/docs-07-for-developers-variational-inference/index.qmd similarity index 100% rename from tutorials/docs-07-for-developers-variational-inference/variational_inference.jmd rename to tutorials/docs-07-for-developers-variational-inference/index.qmd diff --git a/tutorials/docs-08-using-turing/Manifest.toml b/tutorials/docs-08-using-turing/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-08-using-turing/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-08-using-turing/Project.toml b/tutorials/docs-08-using-turing/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-08-using-turing/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-08-using-turing/index.jmd b/tutorials/docs-08-using-turing/index.qmd similarity index 100% rename from tutorials/docs-08-using-turing/index.jmd rename to tutorials/docs-08-using-turing/index.qmd diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml deleted file mode 100644 index ec051a138..000000000 --- a/tutorials/docs-09-using-turing-advanced/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "4c0c886318004c9a56b597cb6e8faf8fe1ac07ac" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-09-using-turing-advanced/Project.toml b/tutorials/docs-09-using-turing-advanced/Project.toml deleted file mode 100644 index 305199355..000000000 --- a/tutorials/docs-09-using-turing-advanced/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-09-using-turing-advanced/advanced.jmd b/tutorials/docs-09-using-turing-advanced/index.qmd similarity index 100% rename from tutorials/docs-09-using-turing-advanced/advanced.jmd rename to tutorials/docs-09-using-turing-advanced/index.qmd diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml deleted file mode 100644 index 9d02faacd..000000000 --- a/tutorials/docs-10-using-turing-autodiff/Manifest.toml +++ /dev/null @@ -1,2156 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "1d294e4a0b1aaa2dd4a0a7a26be6fadb17d7ea42" - -[[deps.ADTypes]] -git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.6" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.2.0" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.7.0" - -[[deps.AbstractTrees]] -git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.5" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.35" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.1" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.1" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.8.1" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] -git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.5.4" -weakdeps = ["Libtask"] - - [deps.AdvancedPS.extensions] - AdvancedPSLibtaskExt = "Libtask" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.1.0" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.40" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.8" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" - -[[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.63.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.22.1" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.7" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["TOML", "UUIDs"] -git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.14.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.3.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.16.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.17" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.107" -weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - DistributionsTestExt = "Test" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.54" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "60a3a231813a89bd796a639d5ce389386e89f4e3" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.7" - - [deps.DynamicPPL.extensions] - DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] - DynamicPPLEnzymeCoreExt = ["EnzymeCore"] - DynamicPPLForwardDiffExt = ["ForwardDiff"] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - DynamicPPLReverseDiffExt = ["ReverseDiff"] - DynamicPPLZygoteRulesExt = ["ZygoteRules"] - - [deps.DynamicPPL.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "2.0.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysPDMatsExt = "PDMats" - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.3" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.7" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.9+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.2" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.2+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" -weakdeps = ["Unitful"] - - [deps.Interpolations.extensions] - InterpolationsUnitfulExt = "Unitful" - -[[deps.IntervalSets]] -git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.10" -weakdeps = ["Random", "RecipesBase", "Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsRandomExt = "Random" - IntervalSetsRecipesBaseExt = "RecipesBase" - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.10.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.2+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.17" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.8" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.0" - - [deps.LLVM.extensions] - BFloat16sExt = "BFloat16s" - - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" - -[[deps.LRUCache]] -git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.6.1" -weakdeps = ["Serialization"] - - [deps.LRUCache.extensions] - SerializationExt = ["Serialization"] - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.39.3+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.7.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADADTypesExt = "ADTypes" - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.27" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.6" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.10" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.0.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.5" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.13" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.12" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.16" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.5" - -[[deps.OffsetArrays]] -git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.13.0" -weakdeps = ["Adapt"] - - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.2" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.3" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.0" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.2" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.3.3" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "d1235bdd57a93bd7504225b792b867e9a7df38d5" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.1" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] -git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.1.2" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.15.2" - - [deps.SciMLBase.extensions] - SciMLBaseChainRulesCoreExt = "ChainRulesCore" - SciMLBasePartialFunctionsExt = "PartialFunctions" - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.7" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.2" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" -weakdeps = ["ChainRulesCore", "Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysChainRulesCoreExt = "ChainRulesCore" - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.7" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] - - [deps.StructArrays.extensions] - StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" - StructArraysSparseArraysExt = "SparseArrays" - StructArraysStaticArraysExt = "StaticArrays" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "be414bfd80c2c91197823890c66ef4b74f5bf5fe" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.1" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.31" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.3" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.80" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.30.5" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.0+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-10-using-turing-autodiff/Project.toml b/tutorials/docs-10-using-turing-autodiff/Project.toml deleted file mode 100644 index 87aeaf382..000000000 --- a/tutorials/docs-10-using-turing-autodiff/Project.toml +++ /dev/null @@ -1,4 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" diff --git a/tutorials/docs-10-using-turing-autodiff/autodiff.jmd b/tutorials/docs-10-using-turing-autodiff/index.qmd similarity index 100% rename from tutorials/docs-10-using-turing-autodiff/autodiff.jmd rename to tutorials/docs-10-using-turing-autodiff/index.qmd diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml deleted file mode 100644 index 25fbf5198..000000000 --- a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml +++ /dev/null @@ -1,2107 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "f6bac772a1c0780a37a1f9e868095eea94af1f8e" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicHMC]] -deps = ["ArgCheck", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "LogExpFunctions", "ProgressMeter", "Random", "SimpleUnPack", "Statistics", "TensorCast"] -git-tree-sha1 = "055d04934849867c54ffa346d69dabbed470a419" -uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb" -version = "3.4.6" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LazyStack]] -deps = ["ChainRulesCore", "Compat", "LinearAlgebra"] -git-tree-sha1 = "aff621f1f49e9262a34aaf0d57d02ea3b35aec60" -uuid = "1fad7336-0346-5a1a-a56f-a06ba010965b" -version = "0.1.3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.Strided]] -deps = ["LinearAlgebra", "TupleTools"] -git-tree-sha1 = "a7a664c91104329c88222aa20264e1a05b6ad138" -uuid = "5e0ebb24-38b0-5f93-81fe-25c709ecae67" -version = "1.2.3" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCast]] -deps = ["ChainRulesCore", "Compat", "LazyStack", "LinearAlgebra", "MacroTools", "Random", "StaticArrays", "TransmuteDims"] -git-tree-sha1 = "88423a9e2a1eb7fb2e8c4dd7ede52e28bc5769eb" -uuid = "02d47bb6-7ce6-556a-be16-bb1710789e2b" -version = "0.4.6" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.TransmuteDims]] -deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Requires", "Strided"] -git-tree-sha1 = "64df189c13692b9581924775109cb14a6b5aef8d" -uuid = "24ddb15e-299a-5cc3-8414-dbddc482d9ca" -version = "0.1.15" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.TupleTools]] -git-tree-sha1 = "155515ed4c4236db30049ac1495e2969cc06be9d" -uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.4.3" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-11-using-turing-dynamichmc/Project.toml b/tutorials/docs-11-using-turing-dynamichmc/Project.toml deleted file mode 100644 index b260da9e2..000000000 --- a/tutorials/docs-11-using-turing-dynamichmc/Project.toml +++ /dev/null @@ -1,4 +0,0 @@ -[deps] -DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-11-using-turing-dynamichmc/dynamichmc.jmd b/tutorials/docs-11-using-turing-dynamichmc/index.qmd similarity index 100% rename from tutorials/docs-11-using-turing-dynamichmc/dynamichmc.jmd rename to tutorials/docs-11-using-turing-dynamichmc/index.qmd diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml deleted file mode 100644 index 55921a6fd..000000000 --- a/tutorials/docs-12-using-turing-guide/Manifest.toml +++ /dev/null @@ -1,2229 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" - -[[deps.ADTypes]] -git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.6" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.2.0" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.7.0" - -[[deps.AbstractTrees]] -git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.5" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.35" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.1" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.1" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.8.1" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] -git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.5.4" -weakdeps = ["Libtask"] - - [deps.AdvancedPS.extensions] - AdvancedPSLibtaskExt = "Libtask" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.1.0" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.40" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.BenchmarkTools]] -deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" -uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.5.0" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.8" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" - -[[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.63.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.22.1" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.7" - -[[deps.CodecBzip2]] -deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] -git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" -uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" -version = "0.8.2" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["TOML", "UUIDs"] -git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.14.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.3.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.16.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.17" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.107" -weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - DistributionsTestExt = "Test" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.54" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "60a3a231813a89bd796a639d5ce389386e89f4e3" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.7" - - [deps.DynamicPPL.extensions] - DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] - DynamicPPLEnzymeCoreExt = ["EnzymeCore"] - DynamicPPLForwardDiffExt = ["ForwardDiff"] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - DynamicPPLReverseDiffExt = ["ReverseDiff"] - DynamicPPLZygoteRulesExt = ["ZygoteRules"] - - [deps.DynamicPPL.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "2.0.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysPDMatsExt = "PDMats" - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.22.0" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.3" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.7" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.9+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.2" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.2+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" -weakdeps = ["Unitful"] - - [deps.Interpolations.extensions] - InterpolationsUnitfulExt = "Unitful" - -[[deps.IntervalSets]] -git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.10" -weakdeps = ["Random", "RecipesBase", "Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsRandomExt = "Random" - IntervalSetsRecipesBaseExt = "RecipesBase" - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.10.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.2+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.17" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.8" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.0" - - [deps.LLVM.extensions] - BFloat16sExt = "BFloat16s" - - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" - -[[deps.LRUCache]] -git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.6.1" -weakdeps = ["Serialization"] - - [deps.LRUCache.extensions] - SerializationExt = ["Serialization"] - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.39.3+0" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.7.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADADTypesExt = "ADTypes" - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.27" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.6" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.10" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.0.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.5" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.13" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MathOptInterface]] -deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f" -uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.27.0" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.MutableArithmetics]] -deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "302fd161eb1c439e4115b51ae456da4e9984f130" -uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.1" - -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.12" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.16" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.5" - -[[deps.OffsetArrays]] -git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.13.0" -weakdeps = ["Adapt"] - - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.13+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "d024bfb56144d947d4fafcd9cb5cafbe3410b133" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.9.2" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.2" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.3" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.0" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PositiveFactorizations]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" -version = "0.2.4" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.2" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.3.3" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] -git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.1.2" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.15.2" - - [deps.SciMLBase.extensions] - SciMLBaseChainRulesCoreExt = "ChainRulesCore" - SciMLBasePartialFunctionsExt = "PartialFunctions" - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.7" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.2" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" -weakdeps = ["ChainRulesCore", "Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysChainRulesCoreExt = "ChainRulesCore" - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.7" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] - - [deps.StructArrays.extensions] - StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" - StructArraysSparseArraysExt = "SparseArrays" - StructArraysStaticArraysExt = "StaticArrays" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "be414bfd80c2c91197823890c66ef4b74f5bf5fe" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.1" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.31" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.3" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.80" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.30.5" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.0+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-12-using-turing-guide/Project.toml b/tutorials/docs-12-using-turing-guide/Project.toml deleted file mode 100644 index 6fdadab66..000000000 --- a/tutorials/docs-12-using-turing-guide/Project.toml +++ /dev/null @@ -1,6 +0,0 @@ -[deps] -Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" -Optim = "429524aa-4258-5aef-a3af-852621145aeb" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-12-using-turing-guide/using-turing-guide.jmd b/tutorials/docs-12-using-turing-guide/index.qmd similarity index 100% rename from tutorials/docs-12-using-turing-guide/using-turing-guide.jmd rename to tutorials/docs-12-using-turing-guide/index.qmd diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml deleted file mode 100644 index fcde28eba..000000000 --- a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml +++ /dev/null @@ -1,1298 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Memoization]] -deps = ["MacroTools"] -git-tree-sha1 = "073f080e733bc6697411901224ed4fd15fefaffa" -uuid = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" -version = "0.2.1" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - - [deps.Ratios.weakdeps] - FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/tutorials/docs-13-using-turing-performance-tips/Project.toml b/tutorials/docs-13-using-turing-performance-tips/Project.toml deleted file mode 100644 index f9c7524b0..000000000 --- a/tutorials/docs-13-using-turing-performance-tips/Project.toml +++ /dev/null @@ -1,5 +0,0 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Memoization = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-13-using-turing-performance-tips/performancetips.jmd b/tutorials/docs-13-using-turing-performance-tips/index.qmd similarity index 100% rename from tutorials/docs-13-using-turing-performance-tips/performancetips.jmd rename to tutorials/docs-13-using-turing-performance-tips/index.qmd diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml deleted file mode 100644 index f10c27030..000000000 --- a/tutorials/docs-14-using-turing-quick-start/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-14-using-turing-quick-start/Project.toml b/tutorials/docs-14-using-turing-quick-start/Project.toml deleted file mode 100644 index d9c1da059..000000000 --- a/tutorials/docs-14-using-turing-quick-start/Project.toml +++ /dev/null @@ -1,3 +0,0 @@ -[deps] -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-14-using-turing-quick-start/quick-start.jmd b/tutorials/docs-14-using-turing-quick-start/index.qmd similarity index 100% rename from tutorials/docs-14-using-turing-quick-start/quick-start.jmd rename to tutorials/docs-14-using-turing-quick-start/index.qmd diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml deleted file mode 100644 index 0151bbac4..000000000 --- a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml +++ /dev/null @@ -1,2072 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Arpack]] -deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] -git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.5.4" - -[[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" -uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" - -[[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" -uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" -uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Clustering]] -deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" -uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" - -[[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" -uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" - -[[deps.ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" - -[[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" -weakdeps = ["SpecialFunctions"] - - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" -uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" - -[[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" -uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" - -[[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" -uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" -uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" - -[[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" -uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" -uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" - -[[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" -uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" - -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" - -[[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" -uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" - -[[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" -uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" - -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - -[[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" -uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" - -[[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" -uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" -uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" -uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" - -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" -uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" -uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" - -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" - -[[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" -uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" - -[[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" -uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - -[[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" -uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.MultivariateStats]] -deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" -uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.2" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NearestNeighbors]] -deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" -uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" -uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" -uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" - -[[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" -uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" -uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - -[[deps.Pixman_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" -uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" - -[[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" -uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" -weakdeps = ["FixedPointNumbers"] - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" - - [deps.SciMLBase.extensions] - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StatsPlots]] -deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" -uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableOperations]] -deps = ["SentinelArrays", "Tables", "Test"] -git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" -version = "1.2.0" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TensorCore]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" -version = "0.1.1" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnicodeFun]] -deps = ["REPL"] -git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" -version = "0.4.1" - -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" - -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" - -[[deps.Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" - -[[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" - -[[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" -uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" - -[[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" -uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" - -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - -[[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" -uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" - -[[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" -uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" - -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - -[[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" -uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" - -[[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" -uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" - -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - -[[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" -uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" - -[[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" -uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" - -[[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" -uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - -[[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" -uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" -uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/tutorials/docs-15-using-turing-sampler-viz/Project.toml b/tutorials/docs-15-using-turing-sampler-viz/Project.toml deleted file mode 100644 index f430df979..000000000 --- a/tutorials/docs-15-using-turing-sampler-viz/Project.toml +++ /dev/null @@ -1,6 +0,0 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-15-using-turing-sampler-viz/sampler-viz.jmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd similarity index 100% rename from tutorials/docs-15-using-turing-sampler-viz/sampler-viz.jmd rename to tutorials/docs-15-using-turing-sampler-viz/index.qmd diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml deleted file mode 100644 index 6a0fc46ca..000000000 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ /dev/null @@ -1,1466 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" - -[[deps.ADTypes]] -git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.6" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" - AbstractFFTsTestExt = "Test" - -[[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" -uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" - -[[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" -uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" -uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" - - [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - - [deps.Accessors.weakdeps] - AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" -uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" - - [deps.AdvancedHMC.extensions] - AdvancedHMCCUDAExt = "CUDA" - AdvancedHMCMCMCChainsExt = "MCMCChains" - AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" - - [deps.AdvancedHMC.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - -[[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" -uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" -weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] - - [deps.AdvancedMH.extensions] - AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] - AdvancedMHMCMCChainsExt = "MCMCChains" - AdvancedMHStructArraysExt = "StructArrays" - -[[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" -uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" - -[[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" -uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" - -[[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" -uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" - -[[deps.AxisAlgorithms]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" -uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" - -[[deps.AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - -[[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" -uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" - - [deps.Bijectors.extensions] - BijectorsDistributionsADExt = "DistributionsAD" - BijectorsForwardDiffExt = "ForwardDiff" - BijectorsLazyArraysExt = "LazyArrays" - BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" - - [deps.Bijectors.weakdeps] - DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - -[[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" -uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" - -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - -[[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" -uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" - -[[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" -uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - -[[deps.CompilerSupportLibraries_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" - -[[deps.CompositionsBase]] -git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" -uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.2" -weakdeps = ["InverseFunctions"] - - [deps.CompositionsBase.extensions] - CompositionsBaseInverseFunctionsExt = "InverseFunctions" - -[[deps.ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - -[[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" -uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] - - [deps.ConstructionBase.extensions] - ConstructionBaseIntervalSetsExt = "IntervalSets" - ConstructionBaseStaticArraysExt = "StaticArrays" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - -[[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" -uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" - -[[deps.DataValueInterfaces]] -git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" -version = "1.0.0" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - -[[deps.DiffResults]] -deps = ["StaticArraysCore"] -git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.1.0" - -[[deps.DiffRules]] -deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" -uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" - -[[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" -uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] - - [deps.Distributions.extensions] - DistributionsChainRulesCoreExt = "ChainRulesCore" - DistributionsDensityInterfaceExt = "DensityInterface" - -[[deps.DistributionsAD]] -deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" -uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" - - [deps.DistributionsAD.extensions] - DistributionsADForwardDiffExt = "ForwardDiff" - DistributionsADLazyArraysExt = "LazyArrays" - DistributionsADReverseDiffExt = "ReverseDiff" - DistributionsADTrackerExt = "Tracker" - - [deps.DistributionsAD.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - -[[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" -uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] - - [deps.DynamicPPL.extensions] - DynamicPPLMCMCChainsExt = ["MCMCChains"] - -[[deps.EllipticalSliceSampling]] -deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" -uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" - -[[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.ExternalDocstrings]] -git-tree-sha1 = "1224740fc4d07c989949e1c1b508ebd49a65a5f6" -uuid = "e189563c-0753-4f5e-ad5c-be4293c83fb4" -version = "0.1.1" - -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" - -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" -uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.7.0" -weakdeps = ["SparseArrays", "Statistics"] - - [deps.FillArrays.extensions] - FillArraysSparseArraysExt = "SparseArrays" - FillArraysStatisticsExt = "Statistics" - -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.Folds]] -deps = ["Accessors", "BangBang", "Baselet", "DefineSingletons", "Distributed", "ExternalDocstrings", "InitialValues", "MicroCollections", "Referenceables", "Requires", "Test", "ThreadedScans", "Transducers"] -git-tree-sha1 = "638109532de382a1f99b1aae1ca8b5d08515d85a" -uuid = "41a02a25-b8f0-4f67-bc48-60067656b558" -version = "0.2.8" - -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - -[[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" -uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" -weakdeps = ["StaticArrays"] - - [deps.ForwardDiff.extensions] - ForwardDiffStaticArraysExt = "StaticArrays" - -[[deps.FunctionWrappers]] -git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" -uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.3" - -[[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" -uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" - -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" - -[[deps.GPUArraysCore]] -deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" -uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" - -[[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" -uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" - -[[deps.InitialValues]] -git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" -uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" -version = "0.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" - -[[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" -uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] - - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" - -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" - -[[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" - -[[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" -uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" - -[[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" -uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" - -[[deps.IteratorInterfaceExtensions]] -git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -uuid = "82899510-4779-5014-852e-03e436cf321d" -version = "1.0.0" - -[[deps.JLLWrappers]] -deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" -uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" - -[[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" -uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" - - [deps.KernelAbstractions.extensions] - EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" - -[[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" -uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Libtask]] -deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] -git-tree-sha1 = "345a40c746404dd9cb1bbc368715856838ab96f2" -uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.8.6" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - -[[deps.LinearAlgebra]] -deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] -uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.LogDensityProblems]] -deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" -uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" - -[[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "7841ebecc60703fa978cbe9623e1a37dcaf96b75" -uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.6.1" - - [deps.LogDensityProblemsAD.extensions] - LogDensityProblemsADADTypesExt = "ADTypes" - LogDensityProblemsADEnzymeExt = "Enzyme" - LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" - LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] - LogDensityProblemsADForwardDiffExt = "ForwardDiff" - LogDensityProblemsADReverseDiffExt = "ReverseDiff" - LogDensityProblemsADTrackerExt = "Tracker" - LogDensityProblemsADZygoteExt = "Zygote" - - [deps.LogDensityProblemsAD.weakdeps] - ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" - BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.LogExpFunctions]] -deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" -uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" -weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] - - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" -uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" - -[[deps.MCMCDiagnosticTools]] -deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" -uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" - -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" - -[[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" -uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.3" - -[[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" -uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" - -[[deps.MappedArrays]] -git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" -uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.2" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.MicroCanonicalHMC]] -deps = ["AbstractMCMC", "DataFrames", "Distributed", "Distributions", "DistributionsAD", "DynamicPPL", "ForwardDiff", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "MCMCDiagnosticTools", "ProgressMeter", "Random", "Statistics"] -git-tree-sha1 = "7f48d0dbedadefa9ff57b96defa08b92ffb2bf6a" -uuid = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" -version = "0.1.0" - -[[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" - -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - -[[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" -uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" - - [deps.NNlib.extensions] - NNlibAMDGPUExt = "AMDGPU" - NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] - NNlibCUDAExt = "CUDA" - NNlibEnzymeCoreExt = "EnzymeCore" - - [deps.NNlib.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - -[[deps.NaNMath]] -deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" -uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" - -[[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "6d42eca6c3a27dc79172d6d947ead136d88751bb" -uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.0" - -[[deps.NaturalSort]] -git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" -uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" -version = "1.0.0" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" - -[[deps.OpenBLAS_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] -uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" - -[[deps.OpenLibm_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" - -[[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" -uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" - -[[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" - -[[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" -uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" - -[[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "f59193f79f8310e5eaad309ccfa8f2fa06b6703b" -uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.19.1" - - [deps.Optimization.extensions] - OptimizationEnzymeExt = "Enzyme" - OptimizationFiniteDiffExt = "FiniteDiff" - OptimizationForwardDiffExt = "ForwardDiff" - OptimizationMTKExt = "ModelingToolkit" - OptimizationReverseDiffExt = "ReverseDiff" - OptimizationSparseDiffExt = ["SparseDiffTools", "Symbolics", "ReverseDiff"] - OptimizationTrackerExt = "Tracker" - OptimizationZygoteExt = "Zygote" - - [deps.Optimization.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.OptimizationOptimJL]] -deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "d8a989697ad1037258238004306057ca866bc337" -uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.12" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.PDMats]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" -uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.28" - -[[deps.PSIS]] -deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] -git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" -uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" -version = "0.7.2" - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pathfinder]] -deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] -git-tree-sha1 = "9276ab48cb3a900e0bca214912c756d52625dadb" -uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -version = "0.7.0" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - -[[deps.PositiveFactorizations]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" -version = "0.2.4" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.8" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - -[[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "00099623ffee15972c16111bcf84c58a0051257c" -uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.9.0" - -[[deps.QuadGK]] -deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" -uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" - -[[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" - -[[deps.RangeArrays]] -git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" -version = "0.3.2" - -[[deps.Ratios]] -deps = ["Requires"] -git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.5" - - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" - - [deps.Ratios.weakdeps] - FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" - -[[deps.RealDot]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" -version = "0.1.0" - -[[deps.RecipesBase]] -deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" - -[[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" -uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" - - [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsMeasurementsExt = "Measurements" - RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsTrackerExt = "Tracker" - RecursiveArrayToolsZygoteExt = "Zygote" - - [deps.RecursiveArrayTools.weakdeps] - Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" - MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Reexport]] -git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "1.2.2" - -[[deps.Referenceables]] -deps = ["Adapt"] -git-tree-sha1 = "e681d3bfa49cd46c3c161505caddf20f0e62aaa9" -uuid = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -version = "0.1.2" - -[[deps.Requires]] -deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" -uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" - -[[deps.Rmath]] -deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" -uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" - -[[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" -uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" - -[[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" - - [deps.Roots.extensions] - RootsForwardDiffExt = "ForwardDiff" - RootsIntervalRootFindingExt = "IntervalRootFinding" - RootsSymPyExt = "SymPy" - RootsSymPyPythonCallExt = "SymPyPythonCall" - - [deps.Roots.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" - SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" - SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" - -[[deps.RuntimeGeneratedFunctions]] -deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" -uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" -uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" - - [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" -uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" - -[[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" -uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" - -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" - -[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseInverseSubset]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" -uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - -[[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" -uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] - - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" - -[[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" -uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" - -[[deps.StatisticalTraits]] -deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" -uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" - -[[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] -uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" - -[[deps.StatsAPI]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" -uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" - -[[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" -uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" - -[[deps.StatsFuns]] -deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" -uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "InverseFunctions"] - - [deps.StatsFuns.extensions] - StatsFunsChainRulesCoreExt = "ChainRulesCore" - StatsFunsInverseFunctionsExt = "InverseFunctions" - -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" - -[[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" -uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" - -[[deps.SuiteSparse]] -deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] -uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" - -[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] -uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" - -[[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadedScans]] -deps = ["ArgCheck"] -git-tree-sha1 = "ca1ba3000289eacba571aaa4efcefb642e7a1de6" -uuid = "24d252fe-5d94-4a69-83ea-56a14333d47a" -version = "0.1.0" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - -[[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" - - [deps.Transducers.extensions] - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" -uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.3" - - [deps.Turing.extensions] - TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" - -[[deps.WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/tutorials/docs-16-using-turing-external-samplers/Project.toml b/tutorials/docs-16-using-turing-external-samplers/Project.toml deleted file mode 100644 index 292767c3c..000000000 --- a/tutorials/docs-16-using-turing-external-samplers/Project.toml +++ /dev/null @@ -1,8 +0,0 @@ -[deps] -AdvancedHMC = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -AdvancedMH = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -MicroCanonicalHMC = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" -Pathfinder = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-16-using-turing-external-samplers/external-samplers.jmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd similarity index 100% rename from tutorials/docs-16-using-turing-external-samplers/external-samplers.jmd rename to tutorials/docs-16-using-turing-external-samplers/index.qmd From 84f7953e87a185076d9115d7f4756c2b88be14e3 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Fri, 17 May 2024 23:20:46 +0530 Subject: [PATCH 03/25] Tutorials added --- tutorials/00-introduction/Manifest.toml | 2202 +++++++++++++ tutorials/00-introduction/Project.toml | 6 + tutorials/00-introduction/index.qmd | 88 +- .../01-gaussian-mixture-model/Manifest.toml | 2202 +++++++++++++ .../01-gaussian-mixture-model/Project.toml | 7 + tutorials/01-gaussian-mixture-model/index.qmd | 43 +- .../02-logistic-regression/Manifest.toml | 2325 +++++++++++++ tutorials/02-logistic-regression/Project.toml | 10 + tutorials/02-logistic-regression/index.qmd | 50 +- .../03-bayesian-neural-network/Manifest.toml | 2231 +++++++++++++ .../03-bayesian-neural-network/Project.toml | 8 + .../03-bayesian-neural-network/index.qmd | 41 +- .../04-hidden-markov-model/Manifest.toml | 2202 +++++++++++++ tutorials/04-hidden-markov-model/Project.toml | 4 + tutorials/04-hidden-markov-model/index.qmd | 40 +- tutorials/05-linear-regression/Manifest.toml | 2329 +++++++++++++ tutorials/05-linear-regression/Project.toml | 10 + tutorials/05-linear-regression/index.qmd | 59 +- .../06-infinite-mixture-model/Manifest.toml | 2137 ++++++++++++ .../06-infinite-mixture-model/Project.toml | 4 + tutorials/06-infinite-mixture-model/index.qmd | 37 +- tutorials/07-poisson-regression/Manifest.toml | 2225 +++++++++++++ tutorials/07-poisson-regression/Project.toml | 9 + tutorials/07-poisson-regression/index.qmd | 36 +- .../Manifest.toml | 2330 +++++++++++++ .../Project.toml | 9 + .../index.qmd | 43 +- .../09-variational-inference/Manifest.toml | 2475 ++++++++++++++ .../09-variational-inference/Project.toml | 13 + tutorials/09-variational-inference/index.qmd | 180 +- .../Manifest.toml | 2873 +++++++++++++++++ .../Project.toml | 8 + .../index.qmd | 65 +- tutorials/11-probabilistic-pca/Manifest.toml | 2231 +++++++++++++ tutorials/11-probabilistic-pca/Project.toml | 9 + tutorials/11-probabilistic-pca/index.qmd | 50 +- tutorials/12-gplvm/Manifest.toml | 2271 +++++++++++++ tutorials/12-gplvm/Project.toml | 11 + tutorials/12-gplvm/index.qmd | 56 +- .../13-seasonal-time-series/Manifest.toml | 2207 +++++++++++++ .../13-seasonal-time-series/Project.toml | 7 + tutorials/13-seasonal-time-series/index.qmd | 40 +- tutorials/14-minituring/Manifest.toml | 1421 ++++++++ tutorials/14-minituring/Project.toml | 8 + tutorials/14-minituring/index.qmd | 44 +- tutorials/15-gaussian-processes/Manifest.toml | 2219 +++++++++++++ tutorials/15-gaussian-processes/Project.toml | 10 + tutorials/15-gaussian-processes/index.qmd | 23 +- 48 files changed, 36443 insertions(+), 465 deletions(-) create mode 100644 tutorials/00-introduction/Manifest.toml create mode 100644 tutorials/00-introduction/Project.toml create mode 100644 tutorials/01-gaussian-mixture-model/Manifest.toml create mode 100644 tutorials/01-gaussian-mixture-model/Project.toml create mode 100644 tutorials/02-logistic-regression/Manifest.toml create mode 100644 tutorials/02-logistic-regression/Project.toml create mode 100644 tutorials/03-bayesian-neural-network/Manifest.toml create mode 100644 tutorials/03-bayesian-neural-network/Project.toml create mode 100644 tutorials/04-hidden-markov-model/Manifest.toml create mode 100644 tutorials/04-hidden-markov-model/Project.toml create mode 100644 tutorials/05-linear-regression/Manifest.toml create mode 100644 tutorials/05-linear-regression/Project.toml create mode 100644 tutorials/06-infinite-mixture-model/Manifest.toml create mode 100644 tutorials/06-infinite-mixture-model/Project.toml create mode 100644 tutorials/07-poisson-regression/Manifest.toml create mode 100644 tutorials/07-poisson-regression/Project.toml create mode 100644 tutorials/08-multinomial-logistic-regression/Manifest.toml create mode 100644 tutorials/08-multinomial-logistic-regression/Project.toml create mode 100644 tutorials/09-variational-inference/Manifest.toml create mode 100644 tutorials/09-variational-inference/Project.toml create mode 100644 tutorials/10-bayesian-differential-equations/Manifest.toml create mode 100644 tutorials/10-bayesian-differential-equations/Project.toml create mode 100644 tutorials/11-probabilistic-pca/Manifest.toml create mode 100644 tutorials/11-probabilistic-pca/Project.toml create mode 100644 tutorials/12-gplvm/Manifest.toml create mode 100644 tutorials/12-gplvm/Project.toml create mode 100644 tutorials/13-seasonal-time-series/Manifest.toml create mode 100644 tutorials/13-seasonal-time-series/Project.toml create mode 100644 tutorials/14-minituring/Manifest.toml create mode 100644 tutorials/14-minituring/Project.toml create mode 100644 tutorials/15-gaussian-processes/Manifest.toml create mode 100644 tutorials/15-gaussian-processes/Project.toml diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml new file mode 100644 index 000000000..76fedf71a --- /dev/null +++ b/tutorials/00-introduction/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.4" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.0+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "ab5b37dc4f98fc037527968852a6f9b2bdf9f32d" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.7" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.18" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.0+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.0+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "5055845dd316575ae2fc1f6dcb3545ff15fe547a" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.14" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.42.2+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.1" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/00-introduction/Project.toml b/tutorials/00-introduction/Project.toml new file mode 100644 index 000000000..18de91042 --- /dev/null +++ b/tutorials/00-introduction/Project.toml @@ -0,0 +1,6 @@ +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/00-introduction/index.qmd b/tutorials/00-introduction/index.qmd index c3207c0d8..e27284f5b 100644 --- a/tutorials/00-introduction/index.qmd +++ b/tutorials/00-introduction/index.qmd @@ -1,35 +1,27 @@ --- title: Introduction to Turing -permalink: /tutorials/:name/ -redirect_from: tutorials/0-introduction/ -weave_options: - error : false +engine: julia --- -## Introduction +### Introduction This is the first of a series of tutorials on the universal probabilistic programming language **Turing**. -Turing is a probabilistic programming system written entirely in Julia. -It has an intuitive modelling syntax and supports a wide range of sampling-based inference algorithms. +Turing is a probabilistic programming system written entirely in Julia. It has an intuitive modelling syntax and supports a wide range of sampling-based inference algorithms. -Familiarity with Julia is assumed throughout this tutorial. -If you are new to Julia, [Learning Julia](https://julialang.org/learning/) is a good starting point. +Familiarity with Julia is assumed throughout this tutorial. If you are new to Julia, [Learning Julia](https://julialang.org/learning/) is a good starting point. -For users new to Bayesian machine learning, please consider more thorough introductions to the field such as [Pattern Recognition and Machine Learning](https://www.springer.com/us/book/9780387310732). -This tutorial tries to provide an intuition for Bayesian inference and gives a simple example on how to use Turing. -Note that this is not a comprehensive introduction to Bayesian machine learning. +For users new to Bayesian machine learning, please consider more thorough introductions to the field such as [Pattern Recognition and Machine Learning](https://www.springer.com/us/book/9780387310732). This tutorial tries to provide an intuition for Bayesian inference and gives a simple example on how to use Turing. Note that this is not a comprehensive introduction to Bayesian machine learning. ### Coin Flipping Without Turing The following example illustrates the effect of updating our beliefs with every piece of new evidence we observe. -Assume that we are unsure about the probability of heads in a coin flip. -To get an intuitive understanding of what "updating our beliefs" is, we will visualize the probability of heads in a coin flip after each observed evidence. +Assume that we are unsure about the probability of heads in a coin flip. To get an intuitive understanding of what "updating our beliefs" is, we will visualize the probability of heads in a coin flip after each observed evidence. First, let us load some packages that we need to simulate a coin flip -```julia +```{julia} using Distributions using Random @@ -38,57 +30,47 @@ Random.seed!(12); # Set seed for reproducibility and to visualize our results. -```julia +```{julia} using StatsPlots ``` -Note that Turing is not loaded here — we do not use it in this example. -If you are already familiar with posterior updates, you can proceed to the next step. +Note that Turing is not loaded here — we do not use it in this example. If you are already familiar with posterior updates, you can proceed to the next step. -Next, we configure the data generating model. -Let us set the true probability that a coin flip turns up heads +Next, we configure the data generating model. Let us set the true probability that a coin flip turns up heads -```julia +```{julia} p_true = 0.5; ``` and set the number of coin flips we will show our model. -```julia +```{julia} N = 100; ``` -We simulate `N` coin flips by drawing `N` random samples from the Bernoulli distribution with success probability `p_true`. -The draws are collected in a variable called `data`: +We simulate `N` coin flips by drawing N random samples from the Bernoulli distribution with success probability `p_true`. The draws are collected in a variable called `data`: -```julia +```{julia} data = rand(Bernoulli(p_true), N); ``` Here is what the first five coin flips look like: -```julia +```{julia} data[1:5] ``` -Next, we specify a prior belief about the distribution of heads and tails in a coin toss. -Here we choose a [Beta](https://en.wikipedia.org/wiki/Beta_distribution) distribution as prior distribution for the probability of heads. -Before any coin flip is observed, we assume a uniform distribution $\operatorname{U}(0, 1) = \operatorname{Beta}(1, 1)$ of the probability of heads. -I.e., every probability is equally likely initially. +Next, we specify a prior belief about the distribution of heads and tails in a coin toss. Here we choose a [Beta](https://en.wikipedia.org/wiki/Beta_distribution) distribution as prior distribution for the probability of heads. Before any coin flip is observed, we assume a uniform distribution $\operatorname{U}(0, 1) = \operatorname{Beta}(1, 1)$ of the probability of heads. I.e., every probability is equally likely initially. -```julia +```{julia} prior_belief = Beta(1, 1); ``` With our priors set and our data at hand, we can perform Bayesian inference. -This is a fairly simple process. -We expose one additional coin flip to our model every iteration, such that the first run only sees the first coin flip, while the last iteration sees all the coin flips. -In each iteration we update our belief to an updated version of the original Beta distribution that accounts for the new proportion of heads and tails. -The update is particularly simple since our prior distribution is a [conjugate prior](https://en.wikipedia.org/wiki/Conjugate_prior). -Note that a closed-form expression for the posterior (implemented in the `updated_belief` expression below) is not accessible in general and usually does not exist for more interesting models. +This is a fairly simple process. We expose one additional coin flip to our model every iteration, such that the first run only sees the first coin flip, while the last iteration sees all the coin flips. In each iteration we update our belief to an updated version of the original Beta distribution that accounts for the new proportion of heads and tails. The update is particularly simple since our prior distribution is a [conjugate prior](https://en.wikipedia.org/wiki/Conjugate_prior). Note that a closed-form expression for the posterior (implemented in the `updated_belief` expression below) is not accessible in general and usually does not exist for more interesting models. -```julia +```{julia} function updated_belief(prior_belief::Beta, data::AbstractArray{Bool}) # Count the number of heads and tails. heads = sum(data) @@ -143,19 +125,19 @@ We now move away from the closed-form expression above. We use **Turing** to specify the same model and to approximate the posterior distribution with samples. To do so, we first need to load `Turing`. -```julia +```{julia} using Turing ``` Additionally, we load `MCMCChains`, a library for analyzing and visualizing the samples with which we approximate the posterior distribution. -```julia +```{julia} using MCMCChains ``` First, we define the coin-flip model using Turing. -```julia +```{julia} # Unconditioned coinflip model with `N` observations. @model function coinflip(; N::Int) # Our prior belief about the probability of heads in a coin toss. @@ -174,7 +156,7 @@ The `@model` macro modifies the body of the Julia function `coinflip` and, e.g., Here we defined a model that is not conditioned on any specific observations as this allows us to easily obtain samples of both `p` and `y` with -```julia +```{julia} rand(coinflip(; N)) ``` @@ -182,7 +164,7 @@ The model can be conditioned on some observations with `|`. See the [documentation of the `condition` syntax](https://turinglang.github.io/DynamicPPL.jl/stable/api/#Condition-and-decondition) in `DynamicPPL.jl` for more details. In the conditioned `model` the observations `y` are fixed to `data`. -```julia +```{julia} coinflip(y::AbstractVector{<:Real}) = coinflip(; N=length(y)) | (; y) model = coinflip(data); @@ -192,13 +174,13 @@ After defining the model, we can approximate the posterior distribution by drawi In this example, we use a [Hamiltonian Monte Carlo](https://en.wikipedia.org/wiki/Hamiltonian_Monte_Carlo) sampler to draw these samples. Other tutorials give more information on the samplers available in Turing and discuss their use for different models. -```julia +```{julia} sampler = NUTS(); ``` We approximate the posterior distribution with 1000 samples: -```julia +```{julia} chain = sample(model, sampler, 1_000; progress=false); ``` @@ -206,17 +188,19 @@ The `sample` function and common keyword arguments are explained more extensivel After finishing the sampling process, we can visually compare the closed-form posterior distribution with the approximation obtained with Turing. -```julia +```{julia} histogram(chain) ``` Now we can build our plot: -```julia; echo=false + -```julia +```{julia} # Visualize a blue density plot of the approximate posterior distribution using HMC (see Chain 1 in the legend). density(chain; xlim=(0, 1), legend=:best, w=2, c=:blue) @@ -241,10 +225,4 @@ vline!([p_true]; label="True probability", c=:red) As we can see, the samples obtained with Turing closely approximate the true posterior distribution. Hopefully this tutorial has provided an easy-to-follow, yet informative introduction to Turing's simpler applications. -More advanced usage is demonstrated in other tutorials. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +More advanced usage is demonstrated in other tutorials. \ No newline at end of file diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml new file mode 100644 index 000000000..e5730c68a --- /dev/null +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/01-gaussian-mixture-model/Project.toml b/tutorials/01-gaussian-mixture-model/Project.toml new file mode 100644 index 000000000..c487e60c5 --- /dev/null +++ b/tutorials/01-gaussian-mixture-model/Project.toml @@ -0,0 +1,7 @@ +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/01-gaussian-mixture-model/index.qmd b/tutorials/01-gaussian-mixture-model/index.qmd index bdae6b9bb..db06d7b07 100644 --- a/tutorials/01-gaussian-mixture-model/index.qmd +++ b/tutorials/01-gaussian-mixture-model/index.qmd @@ -1,9 +1,6 @@ --- title: Unsupervised Learning using Bayesian Mixture Models -permalink: /tutorials/:name/ -redirect_from: tutorials/1-gaussianmixturemodel/ -weave_options: - error : false +engine: julia --- The following tutorial illustrates the use of Turing for clustering data using a Bayesian mixture model. @@ -14,12 +11,12 @@ The aim of this task is to infer a latent grouping (hidden structure) from unlab We generate a synthetic dataset of $N = 60$ two-dimensional points $x_i \in \mathbb{R}^2$ drawn from a Gaussian mixture model. For simplicity, we use $K = 2$ clusters with - - equal weights, i.e., we use mixture weights $w = [0.5, 0.5]$, and - - isotropic Gaussian distributions of the points in each cluster. +- equal weights, i.e., we use mixture weights $w = [0.5, 0.5]$, and +- isotropic Gaussian distributions of the points in each cluster. More concretely, we use the Gaussian distributions $\mathcal{N}([\mu_k, \mu_k]^\mathsf{T}, I)$ with parameters $\mu_1 = -3.5$ and $\mu_2 = 0.5$. -```julia +```{julia} using Distributions using FillArrays using StatsPlots @@ -42,7 +39,7 @@ x = rand(mixturemodel, N); The following plot shows the dataset. -```julia +```{julia} scatter(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") ``` @@ -72,7 +69,7 @@ For more details on Gaussian mixture models, we refer to Christopher M. Bishop, We specify the model with Turing. -```julia +```{julia} using Turing @model function gaussian_mixture_model(x) @@ -109,14 +106,22 @@ We run a MCMC simulation to obtain an approximation of the posterior distributio We use a `Gibbs` sampler that combines a [particle Gibbs](https://www.stats.ox.ac.uk/%7Edoucet/andrieu_doucet_holenstein_PMCMC.pdf) sampler for the discrete parameters (assignments $k$) and a Hamiltonion Monte Carlo sampler for the continuous parameters ($\mu$ and $w$). We generate multiple chains in parallel using multi-threading. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} +#| output: false sampler = Gibbs(PG(100, :k), HMC(0.05, 10, :μ, :w)) nsamples = 100 nchains = 3 chains = sample(model, sampler, MCMCThreads(), nsamples, nchains); ``` -```julia; echo=false +```{julia} +#| echo: false let # Verify that the output of the chain is as expected. for i in MCMCChains.chains(chains) @@ -134,7 +139,7 @@ After sampling we can visualize the trace and density of the parameters of inter We consider the samples of the location parameters $\mu_1$ and $\mu_2$ for the two clusters. -```julia +```{julia} plot(chains[["μ[1]", "μ[2]"]]; colordim=:parameter, legend=true) ``` @@ -143,19 +148,19 @@ For more information see the [Stan documentation](https://mc-stan.org/users/docu We also inspect the samples of the mixture weights $w$. -```julia +```{julia} plot(chains[["w[1]", "w[2]"]]; colordim=:parameter, legend=true) ``` In the following, we just use the first chain to ensure the validity of our inference. -```julia +```{julia} chain = chains[:, :, 1]; ``` As the distributions of the samples for the parameters $\mu_1$, $\mu_2$, $w_1$, and $w_2$ are unimodal, we can safely visualize the density region of our model using the average values. -```julia +```{julia} # Model with mean of samples as parameters. μ_mean = [mean(chain, "μ[$i]") for i in 1:2] w_mean = [mean(chain, "w[$i]") for i in 1:2] @@ -175,7 +180,7 @@ scatter!(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") Finally, we can inspect the assignments of the data points inferred using Turing. As we can see, the dataset is partitioned into two distinct groups. -```julia +```{julia} assignments = [mean(chain, "k[$i]") for i in 1:N] scatter( x[1, :], @@ -185,9 +190,3 @@ scatter( zcolor=assignments, ) ``` - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml new file mode 100644 index 000000000..912e0460f --- /dev/null +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -0,0 +1,2325 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "34150aebdacd33ecff9a0ef36c61f0d85b4f0cfd" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.CategoricalArrays]] +deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" +version = "0.10.8" + + [deps.CategoricalArrays.extensions] + CategoricalArraysJSONExt = "JSON" + CategoricalArraysRecipesBaseExt = "RecipesBase" + CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStructTypesExt = "StructTypes" + + [deps.CategoricalArrays.weakdeps] + JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LearnBase]] +deps = ["LinearAlgebra", "StatsBase"] +git-tree-sha1 = "47e6f4623c1db88570c7a7fa66c6528b92ba4725" +uuid = "7f8f8fb0-2700-5f03-b4bd-41f8cfc144b6" +version = "0.3.0" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLDataPattern]] +deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] +git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" +uuid = "9920b226-0b2a-5f5f-9153-9aa70a013f8b" +version = "0.5.4" + +[[deps.MLDataUtils]] +deps = ["DataFrames", "DelimitedFiles", "LearnBase", "MLDataPattern", "MLLabelUtils", "Statistics", "StatsBase"] +git-tree-sha1 = "ee54803aea12b9c8ee972e78ece11ac6023715e6" +uuid = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" +version = "0.5.4" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MLLabelUtils]] +deps = ["LearnBase", "MappedArrays", "StatsBase"] +git-tree-sha1 = "fd75d4b0c4016e047bbb6263eecf7ae3891af522" +uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" +version = "0.5.7" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.Mocking]] +deps = ["Compat", "ExprTools"] +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" +version = "0.7.8" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.RData]] +deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" +version = "0.8.3" + +[[deps.RDatasets]] +deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] +git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +version = "0.7.7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.33.21" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.2.0+2024a" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TimeZones]] +deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" +version = "1.15.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/02-logistic-regression/Project.toml b/tutorials/02-logistic-regression/Project.toml new file mode 100644 index 000000000..0d3a4f9d7 --- /dev/null +++ b/tutorials/02-logistic-regression/Project.toml @@ -0,0 +1,10 @@ +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/02-logistic-regression/index.qmd b/tutorials/02-logistic-regression/index.qmd index fcd56b908..45737b5fb 100644 --- a/tutorials/02-logistic-regression/index.qmd +++ b/tutorials/02-logistic-regression/index.qmd @@ -1,9 +1,6 @@ --- title: Bayesian Logistic Regression -permalink: /tutorials/:name/ -redirect_from: tutorials/2-logisticregression/ -weave_options: - error : false +engine: julia --- [Bayesian logistic regression](https://en.wikipedia.org/wiki/Logistic_regression#Bayesian) is the Bayesian counterpart to a common tool in machine learning, logistic regression. @@ -14,7 +11,7 @@ In our example, we'll be working to predict whether someone is likely to default To start, let's import all the libraries we'll need. -```julia +```{julia} # Import Turing and Distributions. using Turing, Distributions @@ -39,7 +36,7 @@ Random.seed!(0); Now we're going to import our dataset. The first six rows of the dataset are shown below so you can get a good feel for what kind of data we have. -```julia +```{julia} # Import the "Default" dataset. data = RDatasets.dataset("ISLR", "Default"); @@ -49,7 +46,7 @@ first(data, 6) Most machine learning processes require some effort to tidy up the data, and this is no different. We need to convert the `Default` and `Student` columns, which say "Yes" or "No" into 1s and 0s. Afterwards, we'll get rid of the old words-based columns. -```julia +```{julia} # Convert "Default" and "Student" to numeric values. data[!, :DefaultNum] = [r.Default == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] data[!, :StudentNum] = [r.Student == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] @@ -65,7 +62,7 @@ After we've done that tidying, it's time to split our dataset into training and We must rescale our variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. To do this we will leverage `MLDataUtils`, which also lets us effortlessly shuffle our observations and perform a stratified split to get a representative test set. -```julia +```{julia} function split_data(df, target; at=0.70) shuffled = shuffleobs(df) return trainset, testset = stratifiedobs(row -> row[target], shuffled; p=at) @@ -103,7 +100,7 @@ Within the model, we create four coefficients (`intercept`, `student`, `balance` The `for` block creates a variable `v` which is the logistic function. We then observe the likelihood of calculating `v` given the actual label, `y[i]`. -```julia +```{julia} # Bayesian logistic regression (LR) @model function logistic_regression(x, y, n, σ) intercept ~ Normal(0, σ) @@ -123,7 +120,13 @@ end; Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} # Retrieve the number of observations. n, _ = size(train) @@ -132,7 +135,8 @@ m = logistic_regression(train, train_label, n, 1) chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) ``` -```julia; echo=false +```{julia} +#| echo: false let mean_params = mean(chain) @assert mean_params[:student, :mean] < 0.1 @@ -142,11 +146,12 @@ end Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. -```julia +```{julia} plot(chain) ``` -```julia; echo=false +```{julia} +#| echo: false let mean_params = mapreduce(hcat, mean(chain; append_chains=false)) do df return df[:, :mean] @@ -162,7 +167,7 @@ Looks good! We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our logistic regression. -```julia +```{julia} # The labels to use. l = [:student, :balance, :income] @@ -178,7 +183,7 @@ How do we test how well the model actually predicts whether someone is likely to The `prediction` function below takes a `Matrix` and a `Chain` object. It takes the mean of each parameter's sampled values and re-runs the logistic function using those mean values for every element in the test set. -```julia +```{julia} function prediction(x::Matrix, chain, threshold) # Pull the means from each parameter's sampled values in the chain. intercept = mean(chain[:intercept]) @@ -209,7 +214,7 @@ end; Let's see how we did! We run the test matrix through the prediction function, and compute the [mean squared error](https://en.wikipedia.org/wiki/Mean_squared_error) (MSE) for our prediction. The `threshold` variable sets the sensitivity of the predictions. For example, a threshold of 0.07 will predict a defualt value of 1 for any predicted value greater than 0.07 and no default if it is less than 0.07. -```julia +```{julia} # Set the prediction threshold. threshold = 0.07 @@ -222,7 +227,7 @@ loss = sum((predictions - test_label) .^ 2) / length(test_label) Perhaps more important is to see what percentage of defaults we correctly predicted. The code below simply counts defaults and predictions and presents the results. -```julia +```{julia} defaults = sum(test_label) not_defaults = length(test_label) - defaults @@ -238,7 +243,8 @@ println("Not defaults: $not_defaults Percentage non-defaults correct $(predicted_not_defaults/not_defaults)") ``` -```julia; echo=false +```{julia} +#| echo: false let percentage_correct = predicted_defaults / defaults @assert 0.6 < percentage_correct @@ -247,10 +253,4 @@ end The above shows that with a threshold of 0.07, we correctly predict a respectable portion of the defaults, and correctly identify most non-defaults. This is fairly sensitive to a choice of threshold, and you may wish to experiment with it. -This tutorial has demonstrated how to use Turing to perform Bayesian logistic regression. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +This tutorial has demonstrated how to use Turing to perform Bayesian logistic regression. \ No newline at end of file diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml new file mode 100644 index 000000000..fc19a7d2a --- /dev/null +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -0,0 +1,2231 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "52b869ceb2f168d1c74f4d0e17b52e09eedd43b7" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield"] +git-tree-sha1 = "9774889eac07c2e342e547b5c5c8ae5a2ce5c80b" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.7.1" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.40" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "839b5a5257047c2fe47946e84a706e37d9cfee27" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.24.11" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Flux]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" +uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" +version = "0.14.15" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArrays]] +deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] +git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +version = "10.1.0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.14" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.4.4" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.5" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "4170ff68a0aa2b26b3944ba7bd8789a46d34e6bc" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.30.9" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.70" + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/03-bayesian-neural-network/Project.toml b/tutorials/03-bayesian-neural-network/Project.toml new file mode 100644 index 000000000..afb65b422 --- /dev/null +++ b/tutorials/03-bayesian-neural-network/Project.toml @@ -0,0 +1,8 @@ +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/03-bayesian-neural-network/index.qmd b/tutorials/03-bayesian-neural-network/index.qmd index 70e3269b4..2bd91602c 100644 --- a/tutorials/03-bayesian-neural-network/index.qmd +++ b/tutorials/03-bayesian-neural-network/index.qmd @@ -1,16 +1,13 @@ --- title: Bayesian Neural Networks -permalink: /tutorials/:name/ -redirect_from: tutorials/3-bayesnn/ -weave_options: - error : false +engine: julia --- In this tutorial, we demonstrate how one can implement a Bayesian Neural Network using a combination of Turing and [Flux](https://github.com/FluxML/Flux.jl), a suite of machine learning tools. We will use Flux to specify the neural network's layers and Turing to implement the probabilistic inference, with the goal of implementing a classification algorithm. We will begin with importing the relevant libraries. -```julia +```{julia} using Turing using FillArrays using Flux @@ -27,7 +24,7 @@ Turing.setadbackend(:reversediff) Our goal here is to use a Bayesian neural network to classify points in an artificial dataset. The code below generates data points arranged in a box-like pattern and displays a graph of the dataset we will be working with. -```julia +```{julia} # Number of points to generate. N = 80 M = round(Int, N / 4) @@ -72,13 +69,13 @@ The next step is to define a [feedforward neural network](https://en.wikipedia.o For this we will use `Dense` to define liner layers and compose them via `Chain`, both are neural network primitives from Flux. The network `nn_initial` we created has two hidden layers with `tanh` activations and one output layer with sigmoid (`σ`) activation, as shown below. -![nn-diagram](https://user-images.githubusercontent.com/422990/47970321-bd172080-e038-11e8-9c6d-6c2bd790bd8a.png) +![](https://user-images.githubusercontent.com/422990/47970321-bd172080-e038-11e8-9c6d-6c2bd790bd8a.png) The `nn_initial` is an instance that acts as a function and can take data as inputs and output predictions. We will define distributions on the neural network parameters and use `destructure` from Flux to extract the parameters as `parameters_initial`. The function `destructure` also returns another function `reconstruct` that can take (new) parameters in and return us a neural network instance whose architecture is the same as `nn_initial` but with updated parameters. -```julia +```{julia} # Construct a neural network using Flux nn_initial = Chain(Dense(2, 3, tanh), Dense(3, 2, tanh), Dense(2, 1, σ)) @@ -90,7 +87,7 @@ length(parameters_initial) # number of paraemters in NN The probabilistic model specification below creates a `parameters` variable, which has IID normal variables. The `parameters` vector represents all parameters of our neural net (weights and biases). -```julia +```{julia} @model function bayes_nn(xs, ts, nparameters, reconstruct; alpha=0.09) # Create the weight and bias vector. parameters ~ MvNormal(Zeros(nparameters), I / alpha) @@ -109,7 +106,13 @@ end; Inference can now be performed by calling `sample`. We use the `NUTS` Hamiltonian Monte Carlo sampler here. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} # Perform inference. N = 5000 ch = sample(bayes_nn(hcat(xs...), ts, length(parameters_initial), reconstruct), NUTS(), N); @@ -118,7 +121,7 @@ ch = sample(bayes_nn(hcat(xs...), ts, length(parameters_initial), reconstruct), Now we extract the parameter samples from the sampled chain as `theta` (this is of size `5000 x 20` where `5000` is the number of iterations and `20` is the number of parameters). We'll use these primarily to determine how good our model's classifier is. -```julia +```{julia} # Extract all weight and bias parameters. theta = MCMCChains.group(ch, :parameters).value; ``` @@ -127,7 +130,7 @@ theta = MCMCChains.group(ch, :parameters).value; We can use [MAP estimation](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) to classify our population by using the set of weights that provided the highest log posterior. -```julia +```{julia} # A helper to create NN from weights `theta` and run it through data `x` nn_forward(x, theta) = reconstruct(theta)(x) @@ -157,7 +160,7 @@ $$ The `nn_predict` function takes the average predicted value from a network parameterized by weights drawn from the MCMC chain. -```julia +```{julia} # Return the average predicted value across # multiple weights. function nn_predict(x, theta, num) @@ -167,7 +170,7 @@ end; Next, we use the `nn_predict` function to predict the value at a sample of points where the `x1` and `x2` coordinates range between -6 and 6. As we can see below, we still have a satisfactory fit to our data, and more importantly, we can also see where the neural network is uncertain about its predictions much easier---those regions between cluster boundaries. -```julia +```{julia} # Plot the average prediction. plot_data() @@ -180,7 +183,7 @@ contour!(x1_range, x2_range, Z) Suppose we are interested in how the predictive power of our Bayesian neural network evolved between samples. In that case, the following graph displays an animation of the contour plot generated from the network weights in samples 1 to 1,000. -```julia +```{julia} # Number of iterations to plot. n_end = 500 @@ -191,10 +194,4 @@ anim = @gif for i in 1:n_end end every 5 ``` -This has been an introduction to the applications of Turing and Flux in defining Bayesian neural networks. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +This has been an introduction to the applications of Turing and Flux in defining Bayesian neural networks. \ No newline at end of file diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml new file mode 100644 index 000000000..fc609259f --- /dev/null +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "98395e891759166da437a82de77230ae2de18e0f" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/04-hidden-markov-model/Project.toml b/tutorials/04-hidden-markov-model/Project.toml new file mode 100644 index 000000000..c43a70e12 --- /dev/null +++ b/tutorials/04-hidden-markov-model/Project.toml @@ -0,0 +1,4 @@ +[deps] +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/04-hidden-markov-model/index.qmd b/tutorials/04-hidden-markov-model/index.qmd index 45b0b9f31..935523eef 100644 --- a/tutorials/04-hidden-markov-model/index.qmd +++ b/tutorials/04-hidden-markov-model/index.qmd @@ -1,18 +1,15 @@ --- title: Bayesian Hidden Markov Models -permalink: /tutorials/:name/ -redirect_from: tutorials/4-bayeshmm/ -weave_options: - error : false +engine: julia --- This tutorial illustrates training Bayesian [Hidden Markov Models](https://en.wikipedia.org/wiki/Hidden_Markov_model) (HMM) using Turing. The main goals are learning the transition matrix, emission parameter, and hidden states. For a more rigorous academic overview on Hidden Markov Models, see [An introduction to Hidden Markov Models and Bayesian Networks](http://mlg.eng.cam.ac.uk/zoubin/papers/ijprai.pdf) (Ghahramani, 2001). In this tutorial, we assume there are $k$ discrete hidden states; the observations are continuous and normally distributed - centered around the hidden states. This assumption reduces the number of parameters to be estimated in the emission matrix. -Let's load the libraries we'll need. We also set a random seed (for reproducibility) and the automatic differentiation backend to forward mode (more [here](https://turinglang.org/stable/docs/using-turing/autodiff) on why this is useful). +Let's load the libraries we'll need. We also set a random seed (for reproducibility) and the automatic differentiation backend to forward mode (more [here](https://turinglang.org/dev/docs/using-turing/autodiff) on why this is useful). -```julia +```{julia} # Load libraries. using Turing, StatsPlots, Random @@ -24,7 +21,7 @@ Random.seed!(12345678); In this example, we'll use something where the states and emission parameters are straightforward. -```julia +```{julia} # Define the emission parameter. y = [ 1.0, @@ -83,7 +80,7 @@ Simply put, this says that we expect state one to emit values in a Normally dist The priors on our transition matrix are noninformative, using `T[i] ~ Dirichlet(ones(K)/K)`. The Dirichlet prior used in this way assumes that the state is likely to change to any other state with equal probability. As we'll see, this transition matrix prior will be overwritten as we observe data. -```julia +```{julia} # Turing model definition. @model function BayesHmm(y, K) # Get observation length. @@ -117,15 +114,21 @@ The priors on our transition matrix are noninformative, using `T[i] ~ Dirichlet( end; ``` -We will use a combination of two samplers ([HMC](https://turinglang.org/stable/docs/library/#Turing.Inference.HMC) and [Particle Gibbs](https://turinglang.org/stable/docs/library/#Turing.Inference.PG)) by passing them to the [Gibbs](https://turinglang.org/stable/docs/library/#Turing.Inference.Gibbs) sampler. The Gibbs sampler allows for compositional inference, where we can utilize different samplers on different parameters. +We will use a combination of two samplers ([HMC](https://turinglang.org/dev/docs/library/#Turing.Inference.HMC) and [Particle Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.PG)) by passing them to the [Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.Gibbs) sampler. The Gibbs sampler allows for compositional inference, where we can utilize different samplers on different parameters. In this case, we use HMC for `m` and `T`, representing the emission and transition matrices respectively. We use the Particle Gibbs sampler for `s`, the state sequence. You may wonder why it is that we are not assigning `s` to the HMC sampler, and why it is that we need compositional Gibbs sampling at all. -The parameter `s` is not a continuous variable. It is a vector of **integers**, and thus Hamiltonian methods like HMC and [NUTS](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) won't work correctly. Gibbs allows us to apply the right tools to the best effect. If you are a particularly advanced user interested in higher performance, you may benefit from setting up your Gibbs sampler to use [different automatic differentiation](https://turinglang.org/stable/docs/using-turing/autodiff#compositional-sampling-with-differing-ad-modes) backends for each parameter space. +The parameter `s` is not a continuous variable. It is a vector of **integers**, and thus Hamiltonian methods like HMC and [NUTS](https://turinglang.org/dev/docs/library/#Turing.Inference.NUTS) won't work correctly. Gibbs allows us to apply the right tools to the best effect. If you are a particularly advanced user interested in higher performance, you may benefit from setting up your Gibbs sampler to use [different automatic differentiation](https://turinglang.org/dev/docs/using-turing/autodiff#compositional-sampling-with-differing-ad-modes) backends for each parameter space. Time to run our sampler. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} g = Gibbs(HMC(0.01, 50, :m, :T), PG(120, :s)) chn = sample(BayesHmm(y, 3), g, 1000); ``` @@ -136,7 +139,7 @@ It's a bit easier to show how our model performed graphically. The code below generates an animation showing the graph of the data above, and the data our model generates in each sample. -```julia +```{julia} # Extract our m and s parameters from the chain. m_set = MCMCChains.group(chn, :m).value @@ -168,7 +171,7 @@ end every 3 Looks like our model did a pretty good job, but we should also check to make sure our chain converges. A quick check is to examine whether the diagonal (representing the probability of remaining in the current state) of the transition matrix appears to be stationary. The code below extracts the diagonal and shows a traceplot of each persistence probability. -```julia +```{julia} # Index the chain with the persistence probabilities. subchain = chn[["T[1][1]", "T[2][2]", "T[3][3]"]] @@ -178,15 +181,8 @@ plot(subchain; seriestype=:traceplot, title="Persistence Probability", legend=fa A cursory examination of the traceplot above indicates that all three chains converged to something resembling stationary. We can use the diagnostic functions provided by [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) to engage in some more formal tests, like the Heidelberg and Welch diagnostic: -```julia - +```{julia} heideldiag(MCMCChains.group(chn, :T))[1] ``` -The p-values on the test suggest that we cannot reject the hypothesis that the observed sequence comes from a stationary distribution, so we can be reasonably confident that our transition matrix has converged to something reasonable. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +The p-values on the test suggest that we cannot reject the hypothesis that the observed sequence comes from a stationary distribution, so we can be reasonably confident that our transition matrix has converged to something reasonable. \ No newline at end of file diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml new file mode 100644 index 000000000..ec5e17820 --- /dev/null +++ b/tutorials/05-linear-regression/Manifest.toml @@ -0,0 +1,2329 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.CategoricalArrays]] +deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" +version = "0.10.8" + + [deps.CategoricalArrays.extensions] + CategoricalArraysJSONExt = "JSON" + CategoricalArraysRecipesBaseExt = "RecipesBase" + CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStructTypesExt = "StructTypes" + + [deps.CategoricalArrays.weakdeps] + JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GLM]] +deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] +git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" +uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +version = "1.9.0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "DelimitedFiles", "Random", "ShowCases", "Statistics", "StatsBase"] +git-tree-sha1 = "c92a10a2492dffac0e152a19d5ffd99a5030349a" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.2.1" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.Mocking]] +deps = ["Compat", "ExprTools"] +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" +version = "0.7.8" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.RData]] +deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" +version = "0.8.3" + +[[deps.RDatasets]] +deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] +git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +version = "0.7.7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.ShiftedArrays]] +git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" +uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" +version = "2.0.0" + +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.33.21" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsModels]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" +uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" +version = "0.7.3" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.2.0+2024a" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TimeZones]] +deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" +version = "1.15.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/05-linear-regression/Project.toml b/tutorials/05-linear-regression/Project.toml new file mode 100644 index 000000000..e066be665 --- /dev/null +++ b/tutorials/05-linear-regression/Project.toml @@ -0,0 +1,10 @@ +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/05-linear-regression/index.qmd b/tutorials/05-linear-regression/index.qmd index df67cf277..4c525ac88 100644 --- a/tutorials/05-linear-regression/index.qmd +++ b/tutorials/05-linear-regression/index.qmd @@ -1,9 +1,6 @@ --- title: Linear Regression -permalink: /tutorials/:name/ -redirect_from: tutorials/5-linearregression/ -weave_options: - error : false +engine: julia --- Turing is powerful when applied to complex hierarchical models, but it can also be put to task at common statistical procedures, like [linear regression](https://en.wikipedia.org/wiki/Linear_regression). @@ -13,7 +10,8 @@ This tutorial covers how to implement a linear regression model in Turing. We begin by importing all the necessary libraries. -```julia +```{julia} +#| eval: false # Import Turing. using Turing @@ -40,13 +38,21 @@ using Random Random.seed!(0); ``` +```{julia} +#| eval: false +#| echo: false +#| output: false +setprogress!(false) +``` + We will use the `mtcars` dataset from the [RDatasets](https://github.com/JuliaStats/RDatasets.jl) package. `mtcars` contains a variety of statistics on different car models, including their miles per gallon, number of cylinders, and horsepower, among others. We want to know if we can construct a Bayesian linear regression model to predict the miles per gallon of a car, given the other statistics it has. Let us take a look at the data we have. -```julia +```{julia} +#| eval: false # Load the dataset. data = RDatasets.dataset("datasets", "mtcars") @@ -54,13 +60,15 @@ data = RDatasets.dataset("datasets", "mtcars") first(data, 6) ``` -```julia +```{julia} +#| eval: false size(data) ``` The next step is to get our data ready for testing. We'll split the `mtcars` dataset into two subsets, one for training our model and one for evaluating our model. Then, we separate the targets we want to learn (`MPG`, in this case) and standardize the datasets by subtracting each column's means and dividing by the standard deviation of that column. The resulting data is not very familiar looking, but this standardization process helps the sampler converge far easier. -```julia +```{julia} +#| eval: false # Remove the model column. select!(data, Not(:Model)) @@ -109,7 +117,8 @@ Each coefficient is assumed to be normally distributed with a mean of zero and a We do not know that our coefficients are different from zero, and we don't know which ones are likely to be the most important, so the variance term is quite high. Lastly, each observation $y_i$ is distributed according to the calculated `mu` term given by $\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}$. -```julia +```{julia} +#| eval: false # Bayesian linear regression. @model function linear_regression(x, y) # Set variance prior. @@ -130,20 +139,24 @@ end With our model specified, we can call the sampler. We will use the No U-Turn Sampler ([NUTS](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS)) here. -```julia +```{julia} +#| eval: false model = linear_regression(train, train_target) chain = sample(model, NUTS(), 5_000) ``` We can also check the densities and traces of the parameters visually using the `plot` functionality. -```julia +```{julia} +#| eval: false plot(chain) ``` It looks like all parameters have converged. -```julia; echo=false +```{julia} +#| eval: false +#| echo: false let ess_df = ess(chain) @assert minimum(ess_df[:, :ess]) > 500 "Minimum ESS: $(minimum(ess_df[:, :ess])) - not > 700" @@ -156,7 +169,8 @@ end A satisfactory test of our model is to evaluate how well it predicts. Importantly, we want to compare our model to existing tools like OLS. The code below uses the [GLM.jl]() package to generate a traditional OLS multiple regression model on the same data as our probabilistic model. -```julia +```{julia} +#| eval: false # Import the GLM package. using GLM @@ -176,7 +190,8 @@ StatsBase.reconstruct!(dt_targets, test_prediction_ols); The function below accepts a chain and an input matrix and calculates predictions. We use the samples of the model parameters in the chain starting with sample 200. -```julia +```{julia} +#| eval: false # Make a prediction given an input vector. function prediction(chain, x) p = get_params(chain[200:end, :, :]) @@ -187,7 +202,8 @@ end When we make predictions, we unstandardize them so they are more understandable. -```julia +```{julia} +#| eval: false # Calculate the predictions for the training and testing sets and unstandardize them. train_prediction_bayes = prediction(chain, train) StatsBase.reconstruct!(dt_targets, train_prediction_bayes) @@ -204,7 +220,8 @@ $$ $$ where $y_i$ is the actual value (true MPG) and $\hat{y_i}$ is the predicted value using either OLS or Bayesian linear regression. A lower SSE indicates a closer fit to the data. -```julia +```{julia} +#| eval: false println( "Training set:", "\n\tBayes loss: ", @@ -222,7 +239,9 @@ println( ) ``` -```julia; echo=false +```{julia} +#| eval: false +#| echo: false let bayes_train_loss = msd(train_prediction_bayes, trainset[!, target]) bayes_test_loss = msd(test_prediction_bayes, testset[!, target]) @@ -236,9 +255,3 @@ end ``` As we can see above, OLS and our Bayesian model fit our training and test data set about the same. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml new file mode 100644 index 000000000..c7c977873 --- /dev/null +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -0,0 +1,2137 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/06-infinite-mixture-model/Project.toml b/tutorials/06-infinite-mixture-model/Project.toml new file mode 100644 index 000000000..dc3ff2545 --- /dev/null +++ b/tutorials/06-infinite-mixture-model/Project.toml @@ -0,0 +1,4 @@ +[deps] +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/06-infinite-mixture-model/index.qmd b/tutorials/06-infinite-mixture-model/index.qmd index 1df0c1315..682da632e 100644 --- a/tutorials/06-infinite-mixture-model/index.qmd +++ b/tutorials/06-infinite-mixture-model/index.qmd @@ -1,16 +1,13 @@ --- title: Probabilistic Modelling using the Infinite Mixture Model -permalink: /tutorials/:name/ -redirect_from: tutorials/6-infinitemixturemodel/ -weave_options: - error : false +engine: julia --- In many applications it is desirable to allow the model to adjust its complexity to the amount of data. Consider for example the task of assigning objects into clusters or groups. This task often involves the specification of the number of groups. However, often times it is not known beforehand how many groups exist. Moreover, in some applictions, e.g. modelling topics in text documents or grouping species, the number of examples per group is heavy tailed. This makes it impossible to predefine the number of groups and requiring the model to form new groups when data points from previously unseen groups are observed. A natural approach for such applications is the use of non-parametric models. This tutorial will introduce how to use the Dirichlet process in a mixture of infinitely many Gaussians using Turing. For further information on Bayesian nonparametrics and the Dirichlet process we refer to the [introduction by Zoubin Ghahramani](http://mlg.eng.cam.ac.uk/pub/pdf/Gha12.pdf) and the book "Fundamentals of Nonparametric Bayesian Inference" by Subhashis Ghosal and Aad van der Vaart. -```julia +```{julia} using Turing ``` @@ -38,7 +35,7 @@ where $\pi_1, \pi_2$ are the mixing weights of the mixture model, i.e. $\pi_1 + We can implement this model in Turing for 1D data as follows: -```julia +```{julia} @model function two_model(x) # Hyper-parameters μ0 = 0.0 @@ -85,7 +82,7 @@ The question now arises, is there a generalization of a Dirichlet distribution f But first, to implement an infinite Gaussian mixture model in Turing, we first need to load the `Turing.RandomMeasures` module. `RandomMeasures` contains a variety of tools useful in nonparametrics. -```julia +```{julia} using Turing.RandomMeasures ``` @@ -119,7 +116,7 @@ Those equations show that the conditional prior for component assignments is pro To get a better understanding of this property, we can plot the cluster choosen by for each new observation drawn from the conditional prior. -```julia +```{julia} # Concentration parameter. α = 10.0 @@ -142,7 +139,7 @@ for i in 1:Nmax end ``` -```julia +```{julia} using Plots # Plot the cluster assignments over time @@ -168,7 +165,7 @@ We can see from the equation that the concentration parameter $\alpha$ allows us In Turing we can implement an infinite Gaussian mixture model using the Chinese restaurant process construction of a Dirichlet process as follows: -```julia +```{julia} @model function infiniteGMM(x) # Hyper-parameters, i.e. concentration parameter and parameters of H. α = 1.0 @@ -212,7 +209,7 @@ end We can now use Turing to infer the assignments of some data points. First, we will create some random data that comes from three clusters, with means of 0, -5, and 10. -```julia +```{julia} using Plots, Random # Generate some test data. @@ -224,7 +221,13 @@ data /= std(data); Next, we'll sample from our posterior using SMC. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} # MCMC sampling Random.seed!(2) iterations = 1000 @@ -234,7 +237,7 @@ chain = sample(model_fun, SMC(), iterations); Finally, we can plot the number of clusters in each sample. -```julia +```{julia} # Extract the number of clusters for each sample of the Markov chain. k = map( t -> length(unique(vec(chain[t, MCMCChains.namesingroup(chain, :z), :].value))), @@ -247,7 +250,7 @@ plot(k; xlabel="Iteration", ylabel="Number of clusters", label="Chain 1") If we visualize the histogram of the number of clusters sampled from our posterior, we observe that the model seems to prefer 3 clusters, which is the true number of clusters. Note that the number of clusters in a Dirichlet process mixture model is not limited a priori and will grow to infinity with probability one. However, if conditioned on data the posterior will concentrate on a finite number of clusters enforcing the resulting model to have a finite amount of clusters. It is, however, not given that the posterior of a Dirichlet process Gaussian mixture model converges to the true number of clusters, given that data comes from a finite mixture model. See Jeffrey Miller and Matthew Harrison: [A simple example of Dirichlet process mixture inconsitency for the number of components](https://arxiv.org/pdf/1301.2708.pdf) for details. -```julia +```{julia} histogram(k; xlabel="Number of clusters", legend=false) ``` @@ -273,9 +276,3 @@ p(z_n = k | z_{1:n-1}) \propto \begin{cases} $$ For more details see [this article](https://www.stats.ox.ac.uk/%7Eteh/research/npbayes/Teh2010a.pdf). - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml new file mode 100644 index 000000000..677d98df8 --- /dev/null +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -0,0 +1,2225 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "bace396eb81d800d5a672524649d4d1c97fc2822" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/07-poisson-regression/Project.toml b/tutorials/07-poisson-regression/Project.toml new file mode 100644 index 000000000..a625e8cc4 --- /dev/null +++ b/tutorials/07-poisson-regression/Project.toml @@ -0,0 +1,9 @@ +[deps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/07-poisson-regression/index.qmd b/tutorials/07-poisson-regression/index.qmd index 82bcbcd97..a3b5c91be 100644 --- a/tutorials/07-poisson-regression/index.qmd +++ b/tutorials/07-poisson-regression/index.qmd @@ -1,9 +1,6 @@ --- title: Bayesian Poisson Regression -permalink: /tutorials/:name/ -redirect_from: tutorials/7-poissonregression/ -weave_options: - error : false +engine: julia --- This notebook is ported from the [example notebook](https://docs.pymc.io/notebooks/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. @@ -16,7 +13,7 @@ We will generate the dataset that we will be working on which describes the rela We start by importing the required libraries. -```julia +```{julia} #Import Turing, Distributions and DataFrames using Turing, Distributions, DataFrames, Distributed @@ -34,7 +31,7 @@ We start off by creating a toy dataset. We take the case of a person who takes m 5 random rows are printed from the generated data to get a gist of the data generated. -```julia +```{julia} theta_noalcohol_meds = 1 # no alcohol, took medicine theta_alcohol_meds = 3 # alcohol, took medicine theta_noalcohol_nomeds = 6 # no alcohol, no medicine @@ -71,7 +68,7 @@ df[sample(1:nrow(df), 5; replace=false), :] We plot the distribution of the number of sneezes for the 4 different cases taken above. As expected, the person sneezes the most when he has taken alcohol and not taken his medicine. He sneezes the least when he doesn't consume alcohol and takes his medicine. -```julia +```{julia} #Data Plotting p1 = Plots.histogram( @@ -95,7 +92,7 @@ plot(p1, p2, p3, p4; layout=(2, 2), legend=false) We must convert our `DataFrame` data into the `Matrix` form as the manipulations that we are about are designed to work with `Matrix` data. We also separate the features from the labels which will be later used by the Turing sampler to generate samples from the posterior. -```julia +```{julia} # Convert the DataFrame object to matrices. data = Matrix(df[:, [:alcohol_taken, :nomeds_taken, :product_alcohol_meds]]) data_labels = df[:, :nsneeze] @@ -104,7 +101,7 @@ data We must recenter our data about 0 to help the Turing sampler in initialising the parameter estimates. So, normalising the data in each column by subtracting the mean and dividing by the standard deviation: -```julia +```{julia} # # Rescale our matrices. data = (data .- mean(data; dims=1)) ./ std(data; dims=1) ``` @@ -128,7 +125,7 @@ Intuitively, we can think of the coefficients as: The `for` block creates a variable `theta` which is the weighted combination of the input features. We have defined the priors on these weights above. We then observe the likelihood of calculating `theta` given the actual label, `y[i]`. -```julia +```{julia} # Bayesian poisson regression (LR) @model function poisson_regression(x, y, n, σ²) b0 ~ Normal(0, σ²) @@ -146,7 +143,7 @@ end; We use the `NUTS` sampler to sample values from the posterior. We run multiple chains using the `MCMCThreads()` function to nullify the effect of a problematic chain. We then use the Gelman, Rubin, and Brooks Diagnostic to check the convergence of these multiple chains. -```julia +```{julia} # Retrieve the number of observations. n, _ = size(data) @@ -154,7 +151,7 @@ n, _ = size(data) num_chains = 4 m = poisson_regression(data, data_labels, n, 10) -chain = sample(m, NUTS(), MCMCThreads(), 2_500, num_chains; discard_adapt=false) +chain = sample(m, NUTS(), MCMCThreads(), 2_500, num_chains; discard_adapt=false, progress=false) ``` # Viewing the Diagnostics @@ -163,7 +160,7 @@ We use the Gelman, Rubin, and Brooks Diagnostic to check whether our chains have We expect the chains to have converged. This is because we have taken sufficient number of iterations (1500) for the NUTS sampler. However, in case the test fails, then we will have to take a larger number of iterations, resulting in longer computation time. -```julia +```{julia} gelmandiag(chain) ``` @@ -171,7 +168,7 @@ From the above diagnostic, we can conclude that the chains have converged becaus So, we have obtained the posterior distributions of the parameters. We transform the coefficients and recover theta values by taking the exponent of the meaned values of the coefficients `b0`, `b1`, `b2` and `b3`. We take the exponent of the means to get a better comparison of the relative values of the coefficients. We then compare this with the intuitive meaning that was described earlier. -```julia +```{julia} # Taking the first chain c1 = chain[:, :, 1] @@ -191,7 +188,7 @@ print("The posterior distributions obtained after sampling can be visualised as Visualising the posterior by plotting it: -```julia +```{julia} plot(chain) ``` @@ -207,18 +204,13 @@ Thus, we remove these warmup values and once again view the diagnostics. To remove these warmup values, we take all values except the first 200. This is because we set the second parameter of the NUTS sampler (which is the number of adaptations) to be equal to 200. -```julia +```{julia} chains_new = chain[201:end, :, :] ``` -```julia +```{julia} plot(chains_new) ``` As can be seen from the numeric values and the plots above, the standard deviation values have decreased and all the plotted values are from the estimated posteriors. The exponentiated mean values, with the warmup samples removed, have not changed by much and they are still in accordance with their intuitive meanings as described earlier. -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml new file mode 100644 index 000000000..a9262930b --- /dev/null +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -0,0 +1,2330 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.CategoricalArrays]] +deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" +version = "0.10.8" + + [deps.CategoricalArrays.extensions] + CategoricalArraysJSONExt = "JSON" + CategoricalArraysRecipesBaseExt = "RecipesBase" + CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStructTypesExt = "StructTypes" + + [deps.CategoricalArrays.weakdeps] + JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LearnBase]] +deps = ["LinearAlgebra", "StatsBase"] +git-tree-sha1 = "47e6f4623c1db88570c7a7fa66c6528b92ba4725" +uuid = "7f8f8fb0-2700-5f03-b4bd-41f8cfc144b6" +version = "0.3.0" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLDataPattern]] +deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] +git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" +uuid = "9920b226-0b2a-5f5f-9153-9aa70a013f8b" +version = "0.5.4" + +[[deps.MLDataUtils]] +deps = ["DataFrames", "DelimitedFiles", "LearnBase", "MLDataPattern", "MLLabelUtils", "Statistics", "StatsBase"] +git-tree-sha1 = "ee54803aea12b9c8ee972e78ece11ac6023715e6" +uuid = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" +version = "0.5.4" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MLLabelUtils]] +deps = ["LearnBase", "MappedArrays", "StatsBase"] +git-tree-sha1 = "fd75d4b0c4016e047bbb6263eecf7ae3891af522" +uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" +version = "0.5.7" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.Mocking]] +deps = ["Compat", "ExprTools"] +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" +version = "0.7.8" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.RData]] +deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" +version = "0.8.3" + +[[deps.RDatasets]] +deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] +git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +version = "0.7.7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.33.21" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.2.0+2024a" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TimeZones]] +deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" +version = "1.15.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/08-multinomial-logistic-regression/Project.toml b/tutorials/08-multinomial-logistic-regression/Project.toml new file mode 100644 index 000000000..4eacbe29f --- /dev/null +++ b/tutorials/08-multinomial-logistic-regression/Project.toml @@ -0,0 +1,9 @@ +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" +NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/08-multinomial-logistic-regression/index.qmd b/tutorials/08-multinomial-logistic-regression/index.qmd index 4ba5af9e0..ece4f265c 100644 --- a/tutorials/08-multinomial-logistic-regression/index.qmd +++ b/tutorials/08-multinomial-logistic-regression/index.qmd @@ -1,9 +1,6 @@ --- title: Bayesian Multinomial Logistic Regression -permalink: /tutorials/:name/ -redirect_from: tutorials/8-multinomiallogisticregression/ -weave_options: - error : false +engine: julia --- [Multinomial logistic regression](https://en.wikipedia.org/wiki/Multinomial_logistic_regression) is an extension of logistic regression. Logistic regression is used to model problems in which there are exactly two possible discrete outcomes. Multinomial logistic regression is used to model problems in which there are two or more possible discrete outcomes. @@ -12,7 +9,7 @@ In our example, we'll be using the iris dataset. The iris multiclass problem aim To start, let's import all the libraries we'll need. -```julia +```{julia} # Load Turing. using Turing @@ -43,7 +40,7 @@ Random.seed!(0); Now we're going to import our dataset. Twenty rows of the dataset are shown below so you can get a good feel for what kind of data we have. -```julia +```{julia} # Import the "iris" dataset. data = RDatasets.dataset("datasets", "iris"); @@ -53,7 +50,7 @@ data[rand(1:size(data, 1), 20), :] In this data set, the outcome `Species` is currently coded as a string. We convert it to a numerical value by using indices `1`, `2`, and `3` to indicate species `setosa`, `versicolor`, and `virginica`, respectively. -```julia +```{julia} # Recode the `Species` column. species = ["setosa", "versicolor", "virginica"] data[!, :Species_index] = indexin(data[!, :Species], species) @@ -64,7 +61,7 @@ data[rand(1:size(data, 1), 20), [:Species, :Species_index]] After we've done that tidying, it's time to split our dataset into training and testing sets, and separate the features and target from the data. Additionally, we must rescale our feature variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. -```julia +```{julia} # Split our dataset 50%/50% into training/test sets. trainset, testset = splitobs(shuffleobs(data), 0.5) @@ -93,7 +90,7 @@ Finally, we can define our model `logistic_regression`. It is a function that ta We select the `setosa` species as the baseline class (the choice does not matter). Then we create the intercepts and vectors of coefficients for the other classes against that baseline. More concretely, we create scalar intercepts `intercept_versicolor` and `intersept_virginica` and coefficient vectors `coefficients_versicolor` and `coefficients_virginica` with four coefficients each for the features `SepalLength`, `SepalWidth`, `PetalLength` and `PetalWidth`. We assume a normal distribution with mean zero and standard deviation `σ` as prior for each scalar parameter. We want to find the posterior distribution of these, in total ten, parameters to be able to predict the species for any given set of features. -```julia +```{julia} # Bayesian multinomial logistic regression @model function logistic_regression(x, y, σ) n = size(x, 1) @@ -121,14 +118,20 @@ end; Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} m = logistic_regression(train_features, train_target, 1) chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) ``` Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. -```julia; fig_ext=".png" +```{julia} plot(chain) ``` @@ -136,7 +139,8 @@ Looks good! We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our multinomial logistic regression. The corner function requires MCMCChains and StatsPlots. -```julia; fig_ext=".png" +```{julia} +#| eval: false corner( chain, MCMCChains.namesingroup(chain, :coefficients_versicolor); @@ -144,7 +148,8 @@ corner( ) ``` -```julia; fig_ext=".png" +```{julia} +#| eval: false corner( chain, MCMCChains.namesingroup(chain, :coefficients_virginica); @@ -160,7 +165,7 @@ How do we test how well the model actually predicts which of the three classes a The `prediction` function below takes a `Matrix` and a `Chains` object. It computes the mean of the sampled parameters and calculates the species with the highest probability for each observation. Note that we do not have to evaluate the `softmax` function since it does not affect the order of its inputs. -```julia +```{julia} function prediction(x::Matrix, chain) # Pull the means from each parameter's sampled values in the chain. intercept_versicolor = mean(chain, :intercept_versicolor) @@ -185,7 +190,7 @@ end; Let's see how we did! We run the test matrix through the prediction function, and compute the accuracy for our prediction. -```julia +```{julia} # Make the predictions. predictions = prediction(test_features, chain) @@ -195,7 +200,7 @@ mean(predictions .== testset[!, :Species_index]) Perhaps more important is to see the accuracy per class. -```julia +```{julia} for s in 1:3 rows = testset[!, :Species_index] .== s println("Number of `", species[s], "`: ", count(rows)) @@ -209,9 +214,3 @@ end ``` This tutorial has demonstrated how to use Turing to perform Bayesian multinomial logistic regression. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml new file mode 100644 index 000000000..407efe814 --- /dev/null +++ b/tutorials/09-variational-inference/Manifest.toml @@ -0,0 +1,2475 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "a797d593ed4ed55905ba6ad67df963533cfbc8d6" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield"] +git-tree-sha1 = "9774889eac07c2e342e547b5c5c8ae5a2ce5c80b" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.7.1" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.3.40" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.CategoricalArrays]] +deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" +version = "0.10.8" + + [deps.CategoricalArrays.extensions] + CategoricalArraysJSONExt = "JSON" + CategoricalArraysRecipesBaseExt = "RecipesBase" + CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStructTypesExt = "StructTypes" + + [deps.CategoricalArrays.weakdeps] + JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.ComponentArrays]] +deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "2d9dd5f9a1e0c5bc9e64a4769cf5abcc62178b26" +uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" +version = "0.15.12" + + [deps.ComponentArrays.extensions] + ComponentArraysAdaptExt = "Adapt" + ComponentArraysConstructionBaseExt = "ConstructionBase" + ComponentArraysGPUArraysExt = "GPUArrays" + ComponentArraysOptimisersExt = "Optimisers" + ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" + ComponentArraysReverseDiffExt = "ReverseDiff" + ComponentArraysSciMLBaseExt = "SciMLBase" + ComponentArraysTrackerExt = "Tracker" + ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces" + ComponentArraysZygoteExt = "Zygote" + + [deps.ComponentArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "839b5a5257047c2fe47946e84a706e37d9cfee27" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.24.11" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Flux]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" +uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" +version = "0.14.15" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GLM]] +deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] +git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" +uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +version = "1.9.0" + +[[deps.GPUArrays]] +deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] +git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +version = "10.1.0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.14" + +[[deps.IfElse]] +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.1" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + +[[deps.MLUtils]] +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" +uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" +version = "0.4.4" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.1.4" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.Mocking]] +deps = ["Compat", "ExprTools"] +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" +version = "0.7.8" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.5" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.RData]] +deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" +version = "0.8.3" + +[[deps.RDatasets]] +deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] +git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +version = "0.7.7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.ShiftedArrays]] +git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" +uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" +version = "2.0.0" + +[[deps.ShowCases]] +git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" +uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" +version = "0.1.0" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.Static]] +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsModels]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" +uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" +version = "0.7.3" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.2.0+2024a" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TimeZones]] +deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" +version = "1.15.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "4170ff68a0aa2b26b3944ba7bd8789a46d34e6bc" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.30.9" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.70" +weakdeps = ["Colors", "Distances", "Tracker"] + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/09-variational-inference/Project.toml b/tutorials/09-variational-inference/Project.toml new file mode 100644 index 000000000..a0ce2c3e4 --- /dev/null +++ b/tutorials/09-variational-inference/Project.toml @@ -0,0 +1,13 @@ +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" diff --git a/tutorials/09-variational-inference/index.qmd b/tutorials/09-variational-inference/index.qmd index 127e9d47d..6415069cc 100644 --- a/tutorials/09-variational-inference/index.qmd +++ b/tutorials/09-variational-inference/index.qmd @@ -1,9 +1,6 @@ --- title: Variational inference (VI) in Turing.jl -permalink: /tutorials/:name/ -redirect_from: tutorials/9-variationalinference/ -weave_options: - error : false +engine: julia --- In this post we'll have a look at what's know as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods, and how to use it in Turing.jl as an alternative to other approaches such as MCMC. In particular, we will focus on one of the more standard VI methods called **Automatic Differentation Variational Inference (ADVI)**. @@ -14,7 +11,8 @@ If you are interested in understanding the mathematics you can checkout [our wri Using VI in Turing.jl is very straight forward. If `model` denotes a definition of a `Turing.Model`, performing VI is as simple as -```julia; eval = false +```{julia} +#| eval: false m = model(data...) # instantiate model on the data q = vi(m, vi_alg) # perform VI on `m` using the VI method `vi_alg`, which returns a `VariationalPosterior` ``` @@ -25,7 +23,7 @@ To get a bit more into what we can do with `vi`, we'll first have a look at a si We first import the packages to be used: -```julia +```{julia} using Random using Turing using Turing: Variational @@ -48,12 +46,12 @@ Recall that *conjugate* refers to the fact that we can obtain a closed-form expr First we generate some synthetic data, define the `Turing.Model` and instantiate the model on the data: -```julia +```{julia} # generate data x = randn(2000); ``` -```julia +```{julia} @model function model(x) s ~ InverseGamma(2, 3) m ~ Normal(0.0, sqrt(s)) @@ -63,7 +61,7 @@ x = randn(2000); end; ``` -```julia +```{julia} # Instantiate model m = model(x); ``` @@ -74,13 +72,19 @@ We'll produce 10 000 samples with 200 steps used for adaptation and a target acc If you don't understand what "adaptation" or "target acceptance rate" refers to, all you really need to know is that `NUTS` is known to be one of the most accurate and efficient samplers (when applicable) while requiring little to no hand-tuning to work well. -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} samples_nuts = sample(m, NUTS(), 10_000); ``` Now let's try VI. The most important function you need to now about to do VI in Turing is `vi`: -```julia +```{julia} @doc(Variational.vi) ``` @@ -91,19 +95,19 @@ Additionally, you can pass By default, i.e. when calling `vi(m, advi)`, Turing use a *mean-field* approximation with a multivariate normal as the base-distribution. Mean-field refers to the fact that we assume all the latent variables to be *independent*. This the "standard" ADVI approach; see [Automatic Differentiation Variational Inference (2016)](https://arxiv.org/abs/1603.00788) for more. In Turing, one can obtain such a mean-field approximation by calling `Variational.meanfield(model)` for which there exists an internal implementation for `update`: -```julia +```{julia} @doc(Variational.meanfield) ``` Currently the only implementation of `VariationalInference` available is `ADVI`, which is very convenient and applicable as long as your `Model` is differentiable with respect to the *variational parameters*, that is, the parameters of your variational distribution, e.g. mean and variance in the mean-field approximation. -```julia +```{julia} @doc(Variational.ADVI) ``` To perform VI on the model `m` using 10 samples for gradient estimation and taking 1000 gradient steps is then as simple as: -```julia +```{julia} # ADVI advi = ADVI(10, 1000) q = vi(m, advi); @@ -115,33 +119,34 @@ With that being said, this is not the case in general. For very complex models w And one significant advantage of using `vi` is that we can sample from the resulting `q` with ease. In fact, the result of the `vi` call is a `TransformedDistribution` from Bijectors.jl, and it implements the Distributions.jl interface for a `Distribution`: -```julia +```{julia} q isa MultivariateDistribution ``` This means that we can call `rand` to sample from the variational posterior `q` -```julia +```{julia} histogram(rand(q, 1_000)[1, :]) ``` and `logpdf` to compute the log-probability -```julia +```{julia} logpdf(q, rand(q)) ``` Let's check the first and second moments of the data to see how our approximation compares to the point-estimates form the data: -```julia +```{julia} var(x), mean(x) ``` -```julia +```{julia} (mean(rand(q, 1000); dims=2)...,) ``` -```julia; echo=false +```{julia} +#| echo: false let v, m = (mean(rand(q, 1000); dims=2)...,) # On Turing version 0.14, this atol could be 0.01. @@ -155,12 +160,12 @@ Let's instead look the actual density `q`. For that we need samples: -```julia +```{julia} samples = rand(q, 10000); size(samples) ``` -```julia +```{julia} p1 = histogram( samples[1, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="", ylabel="density" ) @@ -184,7 +189,7 @@ For this particular `Model`, we can in fact obtain the posterior of the latent v *The code below is just work to get the marginals $p(s \mid x_1, \ldots, x_n)$ and $p(m \mid x_1, \ldots, x_n)$. Feel free to skip it.* -```julia +```{julia} # closed form computation of the Normal-inverse-gamma posterior # based on "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy function posterior(μ₀::Real, κ₀::Real, α₀::Real, β₀::Real, x::AbstractVector{<:Real}) @@ -243,18 +248,18 @@ As we'll see, there is really no additional work required to apply variational i This section is basically copy-pasting the code from the [linear regression tutorial](../regression/02_linear-regression). -```julia +```{julia} Random.seed!(1); ``` -```julia +```{julia} using FillArrays using RDatasets using LinearAlgebra ``` -```julia +```{julia} # Import the "Default" dataset. data = RDatasets.dataset("datasets", "mtcars"); @@ -262,7 +267,7 @@ data = RDatasets.dataset("datasets", "mtcars"); first(data, 6) ``` -```julia +```{julia} # Function to split samples. function split_data(df, at=0.70) r = size(df, 1) @@ -291,7 +296,7 @@ function unstandardize(x, mean_train, std_train) end ``` -```julia +```{julia} # Remove the model column. select!(data, Not(:Model)) @@ -319,7 +324,7 @@ train = Matrix(train_cut[:, remove_names]); test = Matrix(test_cut[:, remove_names]); ``` -```julia +```{julia} # Bayesian linear regression. @model function linear_regression(x, y, n_obs, n_vars, ::Type{T}=Vector{Float64}) where {T} # Set variance prior. @@ -337,7 +342,7 @@ test = Matrix(test_cut[:, remove_names]); end; ``` -```julia +```{julia} n_obs, n_vars = size(train) m = linear_regression(train, train_label, n_obs, n_vars); ``` @@ -346,12 +351,12 @@ m = linear_regression(train, train_label, n_obs, n_vars); First we define the initial variational distribution, or, equivalently, the family of distributions to consider. We're going to use the same mean-field approximation as Turing will use by default when we call `vi(m, advi)`, which we obtain by calling `Variational.meanfield`. This returns a `TransformedDistribution` with a `TuringDiagMvNormal` as the underlying distribution and the transformation mapping from the reals to the domain of the latent variables. -```julia +```{julia} q0 = Variational.meanfield(m) typeof(q0) ``` -```julia +```{julia} advi = ADVI(10, 10_000) ``` @@ -363,7 +368,8 @@ Turing also provides a couple of different optimizers: With that being said, thanks to Requires.jl, if we add a `using Flux` prior to `using Turing` we can also make use of all the optimizers in `Flux`, e.g. `ADAM`, without any additional changes to your code! For example: -```julia; eval = false +```{julia} +#| eval: false using Flux, Turing using Turing.Variational @@ -374,11 +380,11 @@ just works. For this problem we'll use the `DecayedADAGrad` from Turing: -```julia +```{julia} opt = Variational.DecayedADAGrad(1e-2, 1.1, 0.9) ``` -```julia +```{julia} q = vi(m, advi, q0; optimizer=opt) typeof(q) ``` @@ -389,35 +395,35 @@ typeof(q) To compute statistics for our approximation we need samples: -```julia +```{julia} z = rand(q, 10_000); ``` Now we can for example look at the average -```julia +```{julia} avg = vec(mean(z; dims=2)) ``` The vector has the same ordering as the model, e.g. in this case `σ²` has index `1`, `intercept` has index `2` and `coefficients` has indices `3:12`. If you forget or you might want to do something programmatically with the result, you can obtain the `sym → indices` mapping as follows: -```julia +```{julia} _, sym2range = bijector(m, Val(true)); sym2range ``` For example, we can check the sample distribution and mean value of `σ²`: -```julia +```{julia} histogram(z[1, :]) avg[union(sym2range[:σ²]...)] ``` -```julia +```{julia} avg[union(sym2range[:intercept]...)] ``` -```julia +```{julia} avg[union(sym2range[:coefficients]...)] ``` @@ -425,7 +431,7 @@ avg[union(sym2range[:coefficients]...)] With a bit of work (this will be much easier in the future), we can also visualize the approximate marginals of the different variables, similar to `plot(chain)`: -```julia +```{julia} function plot_variational_marginals(z, sym2range) ps = [] @@ -462,21 +468,21 @@ function plot_variational_marginals(z, sym2range) end ``` -```julia +```{julia} plot_variational_marginals(z, sym2range) ``` And let's compare this to using the `NUTS` sampler: -```julia +```{julia} chain = sample(m, NUTS(), 10_000); ``` -```julia +```{julia} plot(chain; margin=12.00mm) ``` -```julia +```{julia} vi_mean = vec(mean(z; dims=2))[[ union(sym2range[:coefficients]...)..., union(sym2range[:intercept]...)..., @@ -484,18 +490,18 @@ vi_mean = vec(mean(z; dims=2))[[ ]] ``` -```julia +```{julia} mcmc_mean = mean(chain, names(chain, :parameters))[:, 2] ``` -```julia +```{julia} plot(mcmc_mean; xticks=1:1:length(mcmc_mean), linestyle=:dot, label="NUTS") plot!(vi_mean; linestyle=:dot, label="VI") ``` One thing we can look at is simply the squared error between the means: -```julia +```{julia} sum(abs2, mcmc_mean .- vi_mean) ``` @@ -505,7 +511,7 @@ That looks pretty good! But let's see how the predictive distributions looks for Similarily to the linear regression tutorial, we're going to compare to multivariate ordinary linear regression using the `GLM` package: -```julia +```{julia} # Import the GLM package. using GLM @@ -519,7 +525,7 @@ train_cut.OLSPrediction = unstandardize(GLM.predict(ols), train_unstandardized.M test_cut.OLSPrediction = unstandardize(GLM.predict(ols, test_cut), train_unstandardized.MPG); ``` -```julia +```{julia} # Make a prediction given an input vector, using mean parameter values from a chain. function prediction_chain(chain, x) p = get_params(chain) @@ -529,7 +535,7 @@ function prediction_chain(chain, x) end ``` -```julia +```{julia} # Make a prediction using samples from the variational posterior given an input vector. function prediction(samples::AbstractVector, sym2ranges, x) α = mean(samples[union(sym2ranges[:intercept]...)]) @@ -544,22 +550,22 @@ function prediction(samples::AbstractMatrix, sym2ranges, x) end ``` -```julia +```{julia} # Unstandardize the dependent variable. train_cut.MPG = unstandardize(train_cut.MPG, train_unstandardized.MPG) test_cut.MPG = unstandardize(test_cut.MPG, train_unstandardized.MPG); ``` -```julia +```{julia} # Show the first side rows of the modified dataframe. first(test_cut, 6) ``` -```julia +```{julia} z = rand(q, 10_000); ``` -```julia +```{julia} # Calculate the predictions for the training and testing sets using the samples `z` from variational posterior train_cut.VIPredictions = unstandardize( prediction(z, sym2range, train), train_unstandardized.MPG @@ -576,7 +582,7 @@ test_cut.BayesPredictions = unstandardize( ); ``` -```julia +```{julia} vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) ols_loss1 = mean((train_cut.OLSPrediction - train_cut.MPG) .^ 2) @@ -597,7 +603,7 @@ Test set: Interestingly the squared difference between true- and mean-prediction on the test-set is actually *better* for the mean-field variational posterior than for the "true" posterior obtained by MCMC sampling using `NUTS`. But, as Bayesians, we know that the mean doesn't tell the entire story. One quick check is to look at the mean predictions ± standard deviation of the two different approaches: -```julia +```{julia} z = rand(q, 1000); preds = mapreduce(hcat, eachcol(z)) do zi return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) @@ -617,7 +623,7 @@ ylims!(10, 40) title!("Mean-field ADVI (Normal)") ``` -```julia +```{julia} preds = mapreduce(hcat, 1:5:size(chain, 1)) do i return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) end @@ -644,26 +650,26 @@ As mentioned earlier, it's also possible to just provide the mapping $\theta \ma In this section we're going to construct a mean-field approximation to the model by hand using a composition of`Shift` and `Scale` from Bijectors.jl togheter with a standard multivariate Gaussian as the base distribution. -```julia +```{julia} using Bijectors ``` -```julia +```{julia} using Bijectors: Scale, Shift ``` -```julia +```{julia} d = length(q) base_dist = Turing.DistributionsAD.TuringDiagMvNormal(zeros(d), ones(d)) ``` `bijector(model::Turing.Model)` is defined by Turing, and will return a `bijector` which takes you from the space of the latent variables to the real space. In this particular case, this is a mapping `((0, ∞) × ℝ × ℝ¹⁰) → ℝ¹²`. We're interested in using a normal distribution as a base-distribution and transform samples to the latent space, thus we need the inverse mapping from the reals to the latent space: -```julia +```{julia} to_constrained = inverse(bijector(m)); ``` -```julia +```{julia} function getq(θ) d = length(θ) ÷ 2 A = @inbounds θ[1:d] @@ -675,11 +681,11 @@ function getq(θ) end ``` -```julia +```{julia} q_mf_normal = vi(m, advi, getq, randn(2 * d)); ``` -```julia +```{julia} p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) # MvDiagNormal + Affine transformation + to_constrained p2 = plot_variational_marginals(rand(q, 10_000), sym2range) # Turing.meanfield(m) @@ -694,12 +700,12 @@ But using this interface it becomes trivial to go beyond the mean-field assumpti Here we'll instead consider the variational family to be a full non-diagonal multivariate Gaussian. As in the previous section we'll implement this by transforming a standard multivariate Gaussian using `Scale` and `Shift`, but now `Scale` will instead be using a lower-triangular matrix (representing the Cholesky of the covariance matrix of a multivariate normal) in contrast to the diagonal matrix we used in for the mean-field approximate posterior. -```julia +```{julia} # Using `ComponentArrays.jl` together with `UnPack.jl` makes our lives much easier. using ComponentArrays, UnPack ``` -```julia +```{julia} proto_arr = ComponentArray(; L=zeros(d, d), b=zeros(d)) proto_axes = getaxes(proto_arr) num_params = length(proto_arr) @@ -720,11 +726,11 @@ function getq(θ) end ``` -```julia +```{julia} advi = ADVI(10, 20_000) ``` -```julia +```{julia} q_full_normal = vi( m, advi, getq, randn(num_params); optimizer=Variational.DecayedADAGrad(1e-2) ); @@ -732,19 +738,19 @@ q_full_normal = vi( Let's have a look at the learned covariance matrix: -```julia +```{julia} A = q_full_normal.transform.inner.a ``` -```julia +```{julia} heatmap(cov(A * A')) ``` -```julia +```{julia} zs = rand(q_full_normal, 10_000); ``` -```julia +```{julia} p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) p2 = plot_variational_marginals(rand(q_full_normal, 10_000), sym2range) @@ -753,14 +759,14 @@ plot(p1, p2; layout=(1, 2), size=(800, 2000)) So it seems like the "full" ADVI approach, i.e. no mean-field assumption, obtain the same modes as the mean-field approach but with greater uncertainty for some of the `coefficients`. This -```julia +```{julia} # Unfortunately, it seems like this has quite a high variance which is likely to be due to numerical instability, # so we consider a larger number of samples. If we get a couple of outliers due to numerical issues, # these kind affect the mean prediction greatly. z = rand(q_full_normal, 10_000); ``` -```julia +```{julia} train_cut.VIFullPredictions = unstandardize( prediction(z, sym2range, train), train_unstandardized.MPG ) @@ -769,7 +775,7 @@ test_cut.VIFullPredictions = unstandardize( ); ``` -```julia +```{julia} vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) vifull_loss1 = mean((train_cut.VIFullPredictions - train_cut.MPG) .^ 2) bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) @@ -790,13 +796,15 @@ Test set: OLS loss: $ols_loss2") ``` -```julia; echo=false +```{julia} +#| echo: false +#| eval: false # Verify the loss on the test set. @assert vi_loss2 < 0.01 "VI loss on the test set: $(vi_loss2)" @assert bayes_loss2 < 0.000001 "Bayes loss on the test set: $(bayes_loss2)" ``` -```julia +```{julia} z = rand(q_mf_normal, 1000); preds = mapreduce(hcat, eachcol(z)) do zi return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) @@ -816,7 +824,7 @@ ylims!(10, 40) title!("Mean-field ADVI (Normal)") ``` -```julia +```{julia} z = rand(q_full_normal, 1000); preds = mapreduce(hcat, eachcol(z)) do zi return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) @@ -836,7 +844,7 @@ ylims!(10, 40) title!("Full ADVI (Normal)") ``` -```julia +```{julia} preds = mapreduce(hcat, 1:5:size(chain, 1)) do i return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) end @@ -855,16 +863,10 @@ ylims!(10, 40) title!("MCMC (NUTS)") ``` -```julia +```{julia} plot(p1, p2, p3; layout=(1, 3), size=(900, 250), label="") ``` Here we actually see that indeed both the full ADVI and the MCMC approaches does a much better job of quantifying the uncertainty of predictions for never-before-seen samples, with full ADVI seemingly *underestimating* the variance slightly compared to MCMC. -So now you know how to do perform VI on your Turing.jl model! Great isn't it? - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +So now you know how to do perform VI on your Turing.jl model! Great isn't it? \ No newline at end of file diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml new file mode 100644 index 000000000..dab87fb86 --- /dev/null +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -0,0 +1,2873 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "1cf8b95959ac0235940751347a1e8ff1481cfa25" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.9.2" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "30b7ea34abc4fe816eb1a5f434a43da804836163" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.7.0" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" +weakdeps = ["DistributionsAD", "ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker", "Zygote"] + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.5" + +[[deps.BoundaryValueDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"] +git-tree-sha1 = "005b55fa2eebaa4d7bf3cfb8097807f47116175f" +uuid = "764a87c0-6b3e-53db-9096-fe964310641d" +version = "5.7.1" + + [deps.BoundaryValueDiffEq.extensions] + BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" + + [deps.BoundaryValueDiffEq.weakdeps] + ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.5" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.Cassette]] +git-tree-sha1 = "0970356c3bb9113309c74c27c87083cf9c73880a" +uuid = "7057c7e9-c182-5462-911a-8362d720325c" +version = "0.3.13" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.12" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelayDiffEq]] +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] +git-tree-sha1 = "5959ae76ebd198f70e9af81153644543da0cfaf2" +uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" +version = "5.47.3" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffEqBase]] +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" +version = "6.149.2" + + [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + + [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.DiffEqCallbacks]] +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" +version = "3.6.2" +weakdeps = ["OrdinaryDiffEq", "Sundials"] + +[[deps.DiffEqNoiseProcess]] +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "65cbbe1450ced323b4b17228ccd96349d96795a7" +uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" +version = "5.21.0" +weakdeps = ["ReverseDiff"] + + [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.DifferentialEquations]] +deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] +git-tree-sha1 = "81042254a307980b8ab5b67033aca26c2e157ebb" +uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" +version = "7.13.0" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" +weakdeps = ["ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker"] + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" +weakdeps = ["ChainRulesCore", "EnzymeCore", "ForwardDiff", "MCMCChains", "ReverseDiff", "ZygoteRules"] + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + +[[deps.EllipsisNotation]] +deps = ["StaticArrayInterface"] +git-tree-sha1 = "3507300d4343e8e4ad080ad24e335274c2e297a9" +uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" +version = "1.8.0" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.Enzyme]] +deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] +git-tree-sha1 = "5051d46f8795cd1adb16016f6b7145d42e98297f" +uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" +version = "0.12.6" +weakdeps = ["ChainRulesCore", "SpecialFunctions", "StaticArrays"] + + [deps.Enzyme.extensions] + EnzymeChainRulesCoreExt = "ChainRulesCore" + EnzymeSpecialFunctionsExt = "SpecialFunctions" + EnzymeStaticArraysExt = "StaticArrays" + +[[deps.EnzymeCore]] +git-tree-sha1 = "18394bc78ac2814ff38fe5e0c9dc2cd171e2810c" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.7.2" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" + +[[deps.Enzyme_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "117141562896ca38b1a13bc515dfd2728bd86e55" +uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" +version = "0.0.109+0" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExponentialUtilities]] +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "8e18940a5ba7f4ddb41fe2b79b6acaac50880a86" +uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" +version = "1.26.1" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FastAlmostBandedMatrices]] +deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] +git-tree-sha1 = "9dc913faf8552fd09b92a0d7fcc25f1d5609d795" +uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" +version = "0.1.1" + +[[deps.FastBroadcast]] +deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" +uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" +version = "0.2.8" + +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" + +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f4102aab9c7df8691ed09f9c42e34f5ab5458ab9" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.3" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.23.1" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionProperties]] +deps = ["Cassette", "DiffRules"] +git-tree-sha1 = "bf7c740307eb0ee80e05d8aafbd0c5a901578398" +uuid = "f62d2435-5019-4c03-9749-2d4c77af0cbc" +version = "0.1.2" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArrays]] +deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] +git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +version = "10.1.0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GPUCompiler]] +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "1600477fba37c9fc067b9be21f5e8101f24a8865" +uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" +version = "0.26.4" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.GenericSchur]] +deps = ["LinearAlgebra", "Printf"] +git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" +uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" +version = "0.5.4" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "4f2b57488ac7ee16124396de4f2bbdd51b2602ad" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.11.0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.IRTools]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +uuid = "7869d1d1-7146-5819-86e3-90919afe41df" +version = "0.4.14" + +[[deps.IfElse]] +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.1" + +[[deps.Inflate]] +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" +uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" +version = "0.1.4" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.JumpProcesses]] +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "ed08d89318be7d625613f3c435d1f6678fba4850" +uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" +version = "9.11.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" + +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.6.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" +weakdeps = ["EnzymeCore"] + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.Krylov]] +deps = ["LinearAlgebra", "Printf", "SparseArrays"] +git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" +uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +version = "0.9.6" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.15" + +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.10.0" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LevyArea]] +deps = ["LinearAlgebra", "Random", "SpecialFunctions"] +git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" +uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" +version = "1.0.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.2.0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "efd815eaa56c0ffdf86581df5aaefb7e901323a0" +uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" +version = "2.30.0" + + [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + + [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.170" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.ManualMemory]] +git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" +uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" +version = "0.1.8" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.2.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "b1f2f92feb0bc201e91c155ef575bcc7d9cc3526" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.2" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MuladdMacro]] +git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" +uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" +version = "0.2.4" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.8.3" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "dc0d78eeed89323526203b8a11a4fa6cdbe25cd6" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.11.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.ObjectFile]] +deps = ["Reexport", "StructIO"] +git-tree-sha1 = "195e0a19842f678dd3473ceafbe9d82dfacc583c" +uuid = "d8793406-e978-5875-9003-1fc021f44a92" +version = "0.4.1" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.OrdinaryDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "4cf03bfe9c6159f66b57cda85f169cd0eff0818d" +uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +version = "6.76.0" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + +[[deps.Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.3" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PoissonRandom]] +deps = ["Random"] +git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" +uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" +version = "0.4.4" + +[[deps.Polyester]] +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" +uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" +version = "0.7.14" + +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.2.1" + +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + +[[deps.PreallocationTools]] +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "a660e9daab5db07adf3dedfe09b435cc530d855e" +uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" +version = "0.4.21" +weakdeps = ["ReverseDiff"] + + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.23" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ResettableStacks]] +deps = ["StaticArrays"] +git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" +version = "1.1.1" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLSensitivity]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SparseDiffTools", "StaticArrays", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote"] +git-tree-sha1 = "d3a211a19c01187a2818d581fd24593bd6469255" +uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" +version = "7.58.0" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleNonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c020028bb22a2f23cbd88cb92cf47cbb8c98513f" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "1.8.0" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" + SimpleNonlinearSolveStaticArraysExt = "StaticArrays" + SimpleNonlinearSolveTrackerExt = "Tracker" + SimpleNonlinearSolveZygoteExt = "Zygote" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.18.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.Static]] +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.SteadyStateDiffEq]] +deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"] +git-tree-sha1 = "1158cfdf0da5b0eacdfcfba7c16b174a37bdf6c7" +uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" +version = "2.2.0" + +[[deps.StochasticDiffEq]] +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "97e5d0b7e5ec2e68eec6626af97c59e9f6b6c3d0" +uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" +version = "6.65.1" + +[[deps.StrideArraysCore]] +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" +uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" +version = "0.5.6" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.StructIO]] +deps = ["Test"] +git-tree-sha1 = "010dc73c7146869c042b49adcdb6bf528c12e859" +uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" +version = "0.3.0" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.Sundials]] +deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] +git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997" +uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" +version = "4.24.0" + +[[deps.Sundials_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] +git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" +uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" +version = "5.2.2+0" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.2" + +[[deps.TimerOutputs]] +deps = ["ExprTools", "Printf"] +git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" +version = "0.5.23" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.2.0" + +[[deps.Tricks]] +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.8" + +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "6129a4faf6242e7c3581116fbe3270f3ab17c90d" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.67" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.Zygote]] +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54" +uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "0.6.70" +weakdeps = ["Colors", "Distances", "Tracker"] + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/10-bayesian-differential-equations/Project.toml b/tutorials/10-bayesian-differential-equations/Project.toml new file mode 100644 index 000000000..b3c9af768 --- /dev/null +++ b/tutorials/10-bayesian-differential-equations/Project.toml @@ -0,0 +1,8 @@ +[deps] +DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" diff --git a/tutorials/10-bayesian-differential-equations/index.qmd b/tutorials/10-bayesian-differential-equations/index.qmd index a7ce148fe..ac78970b7 100644 --- a/tutorials/10-bayesian-differential-equations/index.qmd +++ b/tutorials/10-bayesian-differential-equations/index.qmd @@ -1,9 +1,6 @@ --- title: Bayesian Estimation of Differential Equations -permalink: /tutorials/:name/ -redirect_from: tutorials/10-bayesiandiffeq/ -weave_options: - error : false +engine: julia --- Most of the scientific community deals with the basic problem of trying to mathematically model the reality around them and this often involves dynamical systems. The general trend to model these complex dynamical systems is through the use of differential equations. @@ -11,7 +8,8 @@ Differential equation models often have non-measurable parameters. The popular “forward-problem” of simulation consists of solving the differential equations for a given set of parameters, the “inverse problem” to simulation, known as parameter estimation, is the process of utilizing data to determine these model parameters. Bayesian inference provides a robust approach to parameter estimation with quantified uncertainty. -```julia +```{julia} +#| eval: false using Turing using DifferentialEquations @@ -42,7 +40,8 @@ where $x(t)$ and $y(t)$ denote the populations of prey and predator at time $t$, We implement the Lotka-Volterra model and simulate it with parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. -```julia +```{julia} +#| eval: false # Define Lotka-Volterra model. function lotka_volterra(du, u, p, t) # Model parameters. @@ -71,7 +70,8 @@ We generate noisy observations to use for the parameter estimation tasks in this With the [`saveat` argument](https://docs.sciml.ai/latest/basics/common_solver_opts/) we specify that the solution is stored only at `0.1` time units. To make the example more realistic we add random normally distributed noise to the simulation. -```julia +```{julia} +#| eval: false sol = solve(prob, Tsit5(); saveat=0.1) odedata = Array(sol) + 0.8 * randn(size(Array(sol))) @@ -89,7 +89,8 @@ Previously, functions in Turing and DifferentialEquations were not inter-composa Nowadays, however, Turing and DifferentialEquations are completely composable and we can just simulate differential equations inside a Turing `@model`. Therefore, we write the Lotka-Volterra parameter estimation problem using the Turing `@model` macro as below: -```julia +```{julia} +#| eval: false @model function fitlv(data, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -119,7 +120,8 @@ chain = sample(model, NUTS(), MCMCSerial(), 1000, 3; progress=false) The estimated parameters are close to the parameter values the observations were generated with. We can also check visually that the chains have converged. -```julia +```{julia} +#| eval: false plot(chain) ``` @@ -130,7 +132,8 @@ Here, we solve the ODE for 300 randomly picked posterior samples in the `chain`. We plot the ensemble of solutions to check if the solution resembles the data. The 300 retrodicted time courses from the posterior are plotted in gray, the noisy observations are shown as blue and red dots, and the green and purple lines are the ODE solution that was used to generate the data. -```julia +```{julia} +#| eval: false plot(; legend=false) posterior_samples = sample(chain[[:α, :β, :γ, :δ]], 300; replace=false) for p in eachrow(Array(posterior_samples)) @@ -151,7 +154,8 @@ One can also perform parameter inference for a Lotka-Volterra model with incompl For instance, let us suppose we have only observations of the predators but not of the prey. I.e., we fit the model only to the $y$ variable of the system without providing any data for $x$: -```julia +```{julia} +#| eval: false @model function fitlv2(data::AbstractVector, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -178,7 +182,8 @@ chain2 = sample(model2, NUTS(0.45), MCMCSerial(), 5000, 3; progress=false) Again we inspect the trajectories of 300 randomly selected posterior samples. -```julia +```{julia} +#| eval: false plot(; legend=false) posterior_samples = sample(chain2[[:α, :β, :γ, :δ]], 300; replace=false) for p in eachrow(Array(posterior_samples)) @@ -216,7 +221,8 @@ As described in the [DDE example](https://diffeq.sciml.ai/stable/tutorials/dde_e Again we use parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. Moreover, we assume $x(t) = 1$ for $t < 0$. -```julia +```{julia} +#| eval: false function delay_lotka_volterra(du, u, h, p, t) # Model parameters. α, β, γ, δ = p @@ -240,7 +246,8 @@ prob_dde = DDEProblem(delay_lotka_volterra, u0, h, tspan, p); We generate observations by adding normally distributed noise to the results of our simulations. -```julia +```{julia} +#| eval: false sol_dde = solve(prob_dde; saveat=0.1) ddedata = Array(sol_dde) + 0.5 * randn(size(sol_dde)) @@ -251,7 +258,8 @@ scatter!(sol_dde.t, ddedata'; color=[1 2], label="") Now we define the Turing model for the Lotka-Volterra model with delay and sample 3 independent chains. -```julia +```{julia} +#| eval: false @model function fitlv_dde(data, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -276,14 +284,16 @@ model_dde = fitlv_dde(ddedata, prob_dde) chain_dde = sample(model_dde, NUTS(), MCMCSerial(), 300, 3; progress=false) ``` -```julia +```{julia} +#| eval: false plot(chain_dde) ``` Finally, plot trajectories of 300 randomly selected samples from the posterior. Again, the dots indicate our observations, the colored lines are the "true" simulations without noise, and the gray lines are trajectories from the posterior samples. -```julia +```{julia} +#| eval: false plot(; legend=false) posterior_samples = sample(chain_dde[[:α, :β, :γ, :δ]], 300; replace=false) for p in eachrow(Array(posterior_samples)) @@ -321,7 +331,8 @@ Notice that on this model adjoints are slower. This is because adjoints have a higher overhead on small parameter models and therefore we suggest using these methods only for models with around 100 parameters or more. For more details, see https://arxiv.org/abs/1812.01892. -```julia +```{julia} +#| eval: false using Zygote, SciMLSensitivity # Sample a single chain with 1000 samples using Zygote. @@ -332,7 +343,8 @@ sample(model, NUTS(), 1000; progress=false) If desired, we can control the sensitivity analysis method that is used by providing the `sensealg` keyword argument to `solve`. Here we will not choose a `sensealg` and let it use the default choice: -```julia +```{julia} +#| eval: false @model function fitlv_sensealg(data, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -370,7 +382,8 @@ Here we fit a stochastic version of the Lokta-Volterra system. We use a quasi-likelihood approach in which all trajectories of a solution are compared instead of a reduction such as mean, this increases the robustness of fitting and makes the likelihood more identifiable. We use SOSRI to solve the equation. -```julia +```{julia} +#| eval: false u0 = [1.0, 1.0] tspan = (0.0, 10.0) function multiplicative_noise!(du, u, p, t) @@ -394,7 +407,8 @@ data = solve(ensembleprob, SOSRI(); saveat=0.1, trajectories=1000) plot(EnsembleSummary(data)) ``` -```julia +```{julia} +#| eval: false @model function fitlv_sde(data, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -428,7 +442,8 @@ The probabilistic nature of the SDE solution makes the likelihood function noisy Therefore we use NUTS with a low target acceptance rate of `0.25` and specify a set of initial parameters. SGHMC might be a more suitable algorithm to be used here. -```julia +```{julia} +#| eval: false model_sde = fitlv_sde(odedata, prob_sde) setadbackend(:forwarddiff) @@ -441,9 +456,3 @@ chain_sde = sample( ) plot(chain_sde) ``` - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml new file mode 100644 index 000000000..2de087ee4 --- /dev/null +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -0,0 +1,2231 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/11-probabilistic-pca/Project.toml b/tutorials/11-probabilistic-pca/Project.toml new file mode 100644 index 000000000..4f0bfa2bf --- /dev/null +++ b/tutorials/11-probabilistic-pca/Project.toml @@ -0,0 +1,9 @@ +[deps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd index 25ee79759..f7a849404 100644 --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -1,9 +1,6 @@ --- title: Probabilistic Principal Component Analysis (p-PCA) -permalink: /tutorials/:name/ -mathjax: true -weave_options: - error : false +engine: julia --- ## Overview of PCA @@ -82,7 +79,7 @@ We use PCA to explore underlying structure or pattern which may not necessarily First, we load the dependencies used. -```julia +```{julia} using Turing using ReverseDiff @@ -117,7 +114,7 @@ Even so, spotting the structures or patterns in a 9-feature space would be a cha By design, we mannually divide the 60 cells into two groups. the first 3 gene features of the first 30 cells have mean 10, while those of the last 30 cells have mean 10. These two groups of cells differ in the expression of genes. -```julia +```{julia} n_genes = 9 # D n_cells = 60 # N @@ -130,7 +127,7 @@ mat_exp[(2 * (n_genes ÷ 3) + 1):end, (n_cells ÷ 2 + 1):end] .+= 10 To visualize the $(D=9) \times (N=60)$ data matrix `mat_exp`, we use the `heatmap` plot. -```julia +```{julia} heatmap( mat_exp; c=:summer, @@ -153,7 +150,7 @@ Note that: Here we construct the probabilistic model `pPCA()`. As per the p-PCA formula, we think of each row (i.e. each gene feature) following a $N=60$ dimensional multivariate normal distribution centered around the corresponding row of $\mathbf{W}_{D \times k} \times \mathbf{Z}_{k \times N} + \boldsymbol{\mu}_{D \times N}$. -```julia +```{julia} @model function pPCA(X::AbstractMatrix{<:Real}, k::Int) # retrieve the dimension of input matrix X. N, D = size(X) @@ -191,7 +188,13 @@ Here we aim to perform MCMC sampling to infer the projection matrix $\mathbf{W}_ We run the inference using the NUTS sampler, of which the chain length is set to be 500, target accept ratio 0.65 and initial stepsize 0.1. By default, the NUTS sampler samples 1 chain. You are free to try [different samplers](https://turinglang.org/stable/docs/library/#samplers). -```julia +```{julia} +#| echo: false +#| output: false +setprogress!(false) +``` + +```{julia} k = 2 # k is the dimension of the projected space, i.e. the number of principal components/axes of choice ppca = pPCA(mat_exp', k) # instantiate the probabilistic model chain_ppca = sample(ppca, NUTS(), 500); @@ -199,7 +202,7 @@ chain_ppca = sample(ppca, NUTS(), 500); The samples are saved in the Chains struct `chain_ppca`, whose shape can be checked: -```julia +```{julia} size(chain_ppca) # (no. of iterations, no. of vars, no. of chains) = (500, 159, 1) ``` @@ -212,7 +215,7 @@ We try to reconstruct the input data using the posterior mean as parameter estim We first retrieve the samples for the projection matrix `W` from `chain_ppca`. This can be done using the Julia `group(chain, parameter_name)` function. Then we calculate the mean value for each element in $W$, averaging over the whole chain of samples. -```julia +```{julia} # Extract parameter estimates for predicting x - mean of posterior W = reshape(mean(group(chain_ppca, :W))[:, 2], (n_genes, k)) Z = reshape(mean(group(chain_ppca, :Z))[:, 2], (k, n_cells)) @@ -221,7 +224,7 @@ Z = reshape(mean(group(chain_ppca, :Z))[:, 2], (k, n_cells)) mat_rec = W * Z .+ repeat(μ; inner=(1, n_cells)) ``` -```julia +```{julia} heatmap( mat_rec; c=:summer, @@ -236,7 +239,8 @@ heatmap( We can quantitatively check the absolute magnitudes of the column average of the gap between `mat_exp` and `mat_rec`: -```julia; echo=false +```{julia} +#| echo: false # let # diff_matrix = mat_exp .- mat_rec # @assert abs(mean(diff_matrix[:, 4])) <= 0.5 #0.327 @@ -254,7 +258,7 @@ Now we have represented the original high-dimensional data in two dimensions, wi Finally, the benefits of performing PCA is to analyse and visualise the dimension-reduced data in the projected, low-dimensional space. we save the dimension-reduced matrix $\mathbf{Z}$ as a `DataFrame`, rename the columns and visualise the first two dimensions. -```julia +```{julia} df_pca = DataFrame(Z', :auto) rename!(df_pca, Symbol.(["z" * string(i) for i in collect(1:k)])) df_pca[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) @@ -278,7 +282,7 @@ ARD can help pick the correct number of principal directions by regularizing the Essentially, we are using a specific prior over the factor loadings $\mathbf{W}$ that allows us to prune away dimensions in the latent space. The prior is determined by a precision hyperparameter $\alpha$. Here, smaller values of $\alpha$ correspond to more important components. You can find more details about this in e.g. [5]. -```julia +```{julia} @model function pPCA_ARD(X) # Dimensionality of the problem. N, D = size(X) @@ -304,7 +308,7 @@ We also re-paramterise the sampling distribution, i.e. each dimension across all We instantiate the model and ask Turing to sample from it using NUTS sampler. The sample trajectories of $\alpha$ is plotted using the `plot` function from the package `StatsPlots`. -```julia +```{julia} ppca_ARD = pPCA_ARD(mat_exp') # instantiate the probabilistic model chain_ppcaARD = sample(ppca_ARD, NUTS(), 500) # sampling plot(group(chain_ppcaARD, :α); margin=6.0mm) @@ -317,7 +321,7 @@ We see that the chains have converged and the posterior of the $\alpha$ paramete In the following, we will use the mean of the small values to select the *relevant* dimensions (remember that, smaller values of $\alpha$ correspond to more important components.). We can clearly see from the values of $\alpha$ that there should be two dimensions (corresponding to $\bar{\alpha}_3=\bar{\alpha}_5≈0.05$) for this dataset. -```julia +```{julia} # Extract parameter mean estimates of the posterior W = permutedims(reshape(mean(group(chain_ppcaARD, :W))[:, 2], (n_genes, n_genes))) Z = permutedims(reshape(mean(group(chain_ppcaARD, :Z))[:, 2], (n_genes, n_cells)))' @@ -330,7 +334,7 @@ To do this, we first sort `α` using `sortperm()` (in ascending order by default After picking the desired principal directions, we extract the corresponding subset loading vectors from $\mathbf{W}$, and the corresponding dimensions of $\mathbf{Z}$. We obtain a posterior predicted matrix $\mathbf{X} \in \mathbb{R}^{2 \times 60}$ as the product of the two sub-matrices, and compare the recovered info with the original matrix. -```julia +```{julia} α_indices = sortperm(α)[1:2] k = size(α_indices)[1] X_rec = W[:, α_indices] * Z[α_indices, :] @@ -351,7 +355,7 @@ heatmap( We observe that, the data in the original space is recovered with key information, the distinct feature values in the first and last three genes for the two cell groups, are preserved. We can also examine the data in the dimension-reduced space, i.e. the selected components (rows) in $\mathbf{Z}$. -```julia +```{julia} df_pro = DataFrame(Z[α_indices, :]', :auto) rename!(df_pro, Symbol.(["z" * string(i) for i in collect(1:k)])) df_pro[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) @@ -368,15 +372,9 @@ When you are in doubt about the number of dimensions to project onto, ARD might p-PCA is a linear map which linearly transforms the data between the original and projected spaces. It can also thought as a matrix factorisation method, in which $\mathbf{X}=(\mathbf{W} \times \mathbf{Z})^T$. The projection matrix can be understood as a new basis in the projected space, and $\mathbf{Z}$ are the new coordinates. -## References: [^1]: Gilbert Strang, *Introduction to Linear Algebra*, 5th Ed., Wellesley-Cambridge Press, 2016. [^2]: Probabilistic PCA by TensorFlow, "https://www.tensorflow.org/probability/examples/Probabilistic_PCA". [^3]: Gareth M. James, Daniela Witten, Trevor Hastie, Robert Tibshirani, *An Introduction to Statistical Learning*, Springer, 2013. [^4]: David Wipf, Srikantan Nagarajan, *A New View of Automatic Relevance Determination*, NIPS 2007. -[^5]: Christopher Bishop, *Pattern Recognition and Machine Learning*, Springer, 2006. -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +[^5]: Christopher Bishop, *Pattern Recognition and Machine Learning*, Springer, 2006. \ No newline at end of file diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml new file mode 100644 index 000000000..f31e718b3 --- /dev/null +++ b/tutorials/12-gplvm/Manifest.toml @@ -0,0 +1,2271 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractGPs]] +deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] +git-tree-sha1 = "010e6b5e06a9a6b1be6b146a7f29d5848490cc64" +uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" +version = "0.5.21" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.CategoricalArrays]] +deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" +version = "0.10.8" + + [deps.CategoricalArrays.extensions] + CategoricalArraysJSONExt = "JSON" + CategoricalArraysRecipesBaseExt = "RecipesBase" + CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStructTypesExt = "StructTypes" + + [deps.CategoricalArrays.weakdeps] + JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.KernelFunctions]] +deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] +git-tree-sha1 = "654dead9bd3313311b61087ab7a0cf2b7a935cb1" +uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" +version = "0.10.63" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.Mocking]] +deps = ["Compat", "ExprTools"] +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" +version = "0.7.8" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.RData]] +deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" +version = "0.8.3" + +[[deps.RDatasets]] +deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] +git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +version = "0.7.7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TZJData]] +deps = ["Artifacts"] +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" +version = "1.2.0+2024a" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.TimeZones]] +deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "96793c9316d6c9f9be4641f2e5b1319a205e6f27" +uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" +version = "1.15.0" +weakdeps = ["RecipesBase"] + + [deps.TimeZones.extensions] + TimeZonesRecipesBaseExt = "RecipesBase" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/12-gplvm/Project.toml b/tutorials/12-gplvm/Project.toml new file mode 100644 index 000000000..100582955 --- /dev/null +++ b/tutorials/12-gplvm/Project.toml @@ -0,0 +1,11 @@ +[deps] +AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/12-gplvm/index.qmd b/tutorials/12-gplvm/index.qmd index 1ce70d0fa..c8740664d 100644 --- a/tutorials/12-gplvm/index.qmd +++ b/tutorials/12-gplvm/index.qmd @@ -1,13 +1,8 @@ --- title: Gaussian Process Latent Variable Model -permalink: /tutorials/:name/ -redirect_from: tutorials/12-gplvm/ -weave_options: - error : false +engine: julia --- -# Gaussian Process Latent Variable Model - In a previous tutorial, we have discussed latent variable models, in particular probabilistic principal component analysis (pPCA). Here, we show how we can extend the mapping provided by pPCA to non-linear mappings between input and output. For more details about the Gaussian Process Latent Variable Model (GPLVM), @@ -16,9 +11,10 @@ we refer the reader to the [original publication](https://jmlr.org/papers/v6/law In short, the GPVLM is a dimensionality reduction technique that allows us to embed a high-dimensional dataset in a lower-dimensional embedding. Importantly, it provides the advantage that the linear mappings from the embedded space can be non-linearised through the use of Gaussian Processes. -Let's start by loading some dependencies. +### Let's start by loading some dependencies. -```julia; eval=false +```{julia} +#| eval: false using Turing using AbstractGPs using FillArrays @@ -41,7 +37,8 @@ although this is an active area of research. We will briefly touch on some ways to speed things up at the end of this tutorial. We transform the original data with non-linear operations in order to demonstrate the power of GPs to work on non-linear relationships, while keeping the problem reasonably small. -```julia; eval=false +```{julia} +#| eval: false data = dataset("datasets", "iris") species = data[!, "Species"] index = shuffle(1:150) @@ -66,7 +63,8 @@ Indeed, pPCA is basically equivalent to running the GPLVM model with an automati First, we re-introduce the pPCA model (see the tutorial on pPCA for details) -```julia; eval=false +```{julia} +#| eval: false @model function pPCA(x) # Dimensionality of the problem. N, D = size(x) @@ -85,7 +83,8 @@ end; We define two different kernels, a simple linear kernel with an Automatic Relevance Determination transform and a squared exponential kernel. -```julia; eval=false +```{julia} +#| eval: false linear_kernel(α) = LinearKernel() ∘ ARDTransform(α) sekernel(α, σ) = σ * SqExponentialKernel() ∘ ARDTransform(α); ``` @@ -93,7 +92,8 @@ sekernel(α, σ) = σ * SqExponentialKernel() ∘ ARDTransform(α); And here is the GPLVM model. We create separate models for the two types of kernel. -```julia; eval=false +```{julia} +#| eval: false @model function GPLVM_linear(Y, K) # Dimensionality of the problem. N, D = size(Y) @@ -134,7 +134,8 @@ end; end; ``` -```julia; eval=false +```{julia} +#| eval: false # Standard GPs don't scale very well in n, so we use a small subsample for the purpose of this tutorial n_data = 40 # number of features to use from dataset @@ -143,12 +144,14 @@ n_features = 4 ndim = 4; ``` -```julia; eval=false +```{julia} +#| eval: false ppca = pPCA(dat[1:n_data, 1:n_features]) chain_ppca = sample(ppca, NUTS{Turing.ReverseDiffAD{true}}(), 1000); ``` -```julia; eval=false +```{julia} +#| eval: false # we extract the posterior mean estimates of the parameters from the chain z_mean = reshape(mean(group(chain_ppca, :z))[:, 2], (n_features, n_data)) scatter(z_mean[1, :], z_mean[2, :]; group=labels[1:n_data], xlabel=L"z_1", ylabel=L"z_2") @@ -161,12 +164,14 @@ using pPCA (see the pPCA tutorial). Let's try the same with our linear kernel GPLVM model. -```julia; eval=false +```{julia} +#| eval: false gplvm_linear = GPLVM_linear(dat[1:n_data, 1:n_features], ndim) chain_linear = sample(gplvm_linear, NUTS{Turing.ReverseDiffAD{true}}(), 500); ``` -```julia; eval=false +```{julia} +#| eval: false # we extract the posterior mean estimates of the parameters from the chain z_mean = reshape(mean(group(chain_linear, :Z))[:, 2], (n_features, n_data)) alpha_mean = mean(group(chain_linear, :α))[:, 2] @@ -186,12 +191,14 @@ We can see that similar to the pPCA case, the linear kernel GPLVM fails to disti Finally, we demonstrate that by changing the kernel to a non-linear function, we are able to separate the data again. -```julia; eval=false +```{julia} +#| eval: false gplvm = GPLVM(dat[1:n_data, 1:n_features], ndim) chain_gplvm = sample(gplvm, NUTS{Turing.ReverseDiffAD{true}}(), 500); ``` -```julia; eval=false +```{julia} +#| eval: false # we extract the posterior mean estimates of the parameters from the chain z_mean = reshape(mean(group(chain_gplvm, :Z))[:, 2], (ndim, n_data)) alpha_mean = mean(group(chain_gplvm, :α))[:, 2] @@ -206,7 +213,8 @@ scatter( ) ``` -```julia; eval=false +```{julia} +#| eval: false let @assert abs( mean(z_mean[alpha1, labels[1:n_data] .== "setosa"]) - @@ -215,10 +223,4 @@ let end ``` -Now, the split between the two groups is visible again. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +Now, the split between the two groups is visible again. \ No newline at end of file diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml new file mode 100644 index 000000000..2c2b4d46e --- /dev/null +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -0,0 +1,2207 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "af7399a6cc98476b7337e599b66269c48c3d4bdc" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/13-seasonal-time-series/Project.toml b/tutorials/13-seasonal-time-series/Project.toml new file mode 100644 index 000000000..332677a55 --- /dev/null +++ b/tutorials/13-seasonal-time-series/Project.toml @@ -0,0 +1,7 @@ +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/13-seasonal-time-series/index.qmd b/tutorials/13-seasonal-time-series/index.qmd index 0bce7f561..e3ad1cf62 100644 --- a/tutorials/13-seasonal-time-series/index.qmd +++ b/tutorials/13-seasonal-time-series/index.qmd @@ -1,8 +1,6 @@ --- title: Bayesian Time Series Analysis -permalink: /tutorials/:name/ -weave_options: - error : false +engine: julia --- In time series analysis we are often interested in understanding how various real-life circumstances impact our quantity of interest. @@ -29,7 +27,7 @@ Two common components are *trends*, which represent the overall change of the ti and *cyclic effects* which contribute oscillating effects around the trend. Let us simulate some data with an additive linear trend and oscillating effects. -```julia +```{julia} using Turing using FillArrays using StatsPlots @@ -68,7 +66,7 @@ In this time series, cyclic effects are just added on top of the trend. If we instead multiply the components the cyclic effects cause the series to oscillate between larger and larger values, since they get scaled by the trend. -```julia +```{julia} g(t) = f₁(t) * f₂(t) * f₃(t) plot(g, tt; label="f(t)", title="Observed time series", legend=:topleft, linewidth=3) @@ -87,7 +85,7 @@ Having discussed time series decomposition, let us fit a model to the time serie Before building our model, we standardise the time axis to $[0, 1]$ and subtract the max of the time series. This helps convergence while maintaining interpretability and the correct scales for the cyclic components. -```julia +```{julia} σ_true = 0.35 t = collect(tt[begin:3:end]) t_min, t_max = extrema(t) @@ -108,7 +106,7 @@ How long a period should be is problem dependent, but as an example let us say i If we then find evidence for a cyclic effect with a frequency of 2, that would mean a biannual effect. A frequency of 4 would mean quarterly etc. Since we are using synthetic data, we are simply going to let the period be 1, which is the entire length of the time series. -```julia +```{julia} freqs = 1:10 num_freqs = length(freqs) period = 1 @@ -134,7 +132,7 @@ And just because it is so easy, we parameterise our model with the operation wit This lets us use the exact same code for both additive and multiplicative models. Finally, we plot prior predictive samples to make sure our priors make sense. -```julia +```{julia} @model function decomp_model(t, c, op) α ~ Normal(0, 10) βt ~ Normal(0, 2) @@ -157,7 +155,7 @@ scatter!(t, yf; color=2, label="Data") With the model specified and with a reasonable prior we can now let Turing decompose the time series for us! -```julia; fig_ext = ".png" +```{julia} function mean_ribbon(samples) qs = quantile(samples) low = qs[:, Symbol("2.5%")] @@ -210,7 +208,7 @@ function plot_fit(x, y, decomp, ymax) return trend_plt, cyclic_plt end -chain = sample(decomp_model(x, cyclic_features, +) | (; y=yf), NUTS(), 2000) +chain = sample(decomp_model(x, cyclic_features, +) | (; y=yf), NUTS(), 2000, progress=false) yf_samples = predict(decomp_model(x, cyclic_features, +), chain) m, conf = mean_ribbon(yf_samples) predictive_plt = plot( @@ -229,7 +227,8 @@ decomposed_plt = plot_fit(t, yf, decomp, yf_max) plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) ``` -```julia, echo=false +```{julia} +#| echo: false let @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" lower_quantile = m .- conf[1] # 2.5% quantile @@ -244,7 +243,7 @@ Since our model takes cyclic effects into account separately, we get a better estimate of the true overall trend than if we would have just fitted a line. But what frequency content did the model identify? -```julia +```{julia} function plot_cyclic_features(βsin, βcos) labels = reshape(["freq = $i" for i in freqs], 1, :) colors = collect(freqs)' @@ -286,7 +285,7 @@ Plotting the posterior over the cyclic features reveals that the model managed t Since we wrote our model to accept a combining operator, we can easily run the same analysis for a multiplicative model. -```julia +```{julia} yg = g.(t) .+ σ_true .* randn(size(t)) y_prior_samples = mapreduce(hcat, 1:100) do _ @@ -296,8 +295,8 @@ plot(t, y_prior_samples; linewidth=1, alpha=0.5, color=1, label="", title="Prior scatter!(t, yf; color=2, label="Data") ``` -```julia; fig_ext = ".png" -chain = sample(decomp_model(x, cyclic_features, .*) | (; y=yg), NUTS(), 2000) +```{julia} +chain = sample(decomp_model(x, cyclic_features, .*) | (; y=yg), NUTS(), 2000, progress=false) yg_samples = predict(decomp_model(x, cyclic_features, .*), chain) m, conf = mean_ribbon(yg_samples) predictive_plt = plot( @@ -316,7 +315,8 @@ decomposed_plt = plot_fit(t, yg, decomp, 0) plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) ``` -```julia, echo=false +```{julia} +#| echo: false let @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" lower_quantile = m .- conf[1] # 2.5% quantile @@ -327,7 +327,7 @@ end The model fits! What about the infered cyclic components? -```julia +```{julia} βc = Array(group(chain, :βc)) plot_cyclic_features(βc[:, begin:num_freqs, :], βc[:, (num_freqs + 1):end, :]) ``` @@ -338,9 +338,3 @@ While multiplicative model fits to the data, it does not recover the true parame In this tutorial we have seen how to implement and fit time series models using additive and multiplicative decomposition. We also saw how to visualise the model fit, and how to interpret learned cyclical components. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml new file mode 100644 index 000000000..cca6d99cc --- /dev/null +++ b/tutorials/14-minituring/Manifest.toml @@ -0,0 +1,1421 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/14-minituring/Project.toml b/tutorials/14-minituring/Project.toml new file mode 100644 index 000000000..01de61277 --- /dev/null +++ b/tutorials/14-minituring/Project.toml @@ -0,0 +1,8 @@ +[deps] +AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/14-minituring/index.qmd b/tutorials/14-minituring/index.qmd index 4924de76b..c1b8a452a 100644 --- a/tutorials/14-minituring/index.qmd +++ b/tutorials/14-minituring/index.qmd @@ -1,9 +1,6 @@ --- title: MiniTuring -permalink: /:collection/:name/ -redirect_from: tutorials/14-minituring/ -weave_options: - error : false +engine: julia --- In this tutorial we develop a very simple probabilistic programming language. @@ -13,7 +10,7 @@ This is intentional as we want to demonstrate some key ideas from Turing's inter To make things easy to understand and to implement we restrict our language to a very simple subset of the language that Turing actually supports. Defining an accurate syntax description is not our goal here, instead, we give a simple example and all similar programs should work. -Consider a probabilistic model defined by +# Consider a probabilistic model defined by $$ \begin{aligned} @@ -26,7 +23,8 @@ $$ We assume that `x` is data, i.e., an observed variable. In our small language this model will be defined as -```julia; eval=false; +```{julia} +#| eval: false @mini_model function m(x) a ~ Normal(0.5, 1) b ~ Normal(a, 2) @@ -44,14 +42,14 @@ Specifically, we demand that First, we import some required packages: -```julia +```{julia} using MacroTools, Distributions, Random, AbstractMCMC, MCMCChains ``` Before getting to the actual "compiler", we first build the data structure for the program trace. A program trace for a probabilistic programming language needs to at least record the values of stochastic variables and their log-probabilities. -```julia +```{julia} struct VarInfo{V,L} values::V logps::L @@ -81,7 +79,7 @@ Thus readers are advised to refer to the documentation of DynamicPPL and Turing Here we can see the implementation of a sampler that draws values of unobserved variables from the prior and computes the log-probability for every variable. -```julia +```{julia} struct SamplingContext{S<:AbstractMCMC.AbstractSampler,R<:Random.AbstractRNG} rng::R sampler::S @@ -114,7 +112,7 @@ Afterwards, as usual the Julia compiler will just-in-time compile the model func The manipulation of Julia expressions is an advanced part of the Julia language. The [Julia documentation](https://docs.julialang.org/en/v1/manual/metaprogramming/) provides an introduction to and more details about this so-called metaprogramming. -```julia +```{julia} macro mini_model(expr) return esc(mini_model(expr)) end @@ -159,7 +157,7 @@ The AbstractMCMC interface requires us to at least Thus here we define a `MiniModel` model. In this model we store the model function and the observed data. -```julia +```{julia} struct MiniModel{F,D} <: AbstractMCMC.AbstractModel f::F data::D # a NamedTuple of all the data @@ -173,7 +171,7 @@ To illustrate probabilistic inference with our mini language we implement an ext We hard-code the proposal step as part of the sampler and only allow normal distributions with zero mean and fixed standard deviation. The Metropolis-Hastings sampler in Turing is more flexible. -```julia +```{julia} struct MHSampler{T<:Real} <: AbstractMCMC.AbstractSampler sigma::T end @@ -198,7 +196,7 @@ We need to define two `step` functions, one for the first step and the other for In the first step we sample values from the prior distributions and in the following steps we sample with the random-walk proposal. The two functions are identified by the different arguments they take. -```julia +```{julia} # The fist step: Sampling from the prior distributions function AbstractMCMC.step( rng::Random.AbstractRNG, model::MiniModel, sampler::MHSampler; kwargs... @@ -237,7 +235,7 @@ end; To make it easier to analyze the samples and compare them with results from Turing, additionally we define a version of `AbstractMCMC.bundle_samples` for our model and sampler that returns a `MCMCChains.Chains` object of samples. -```julia +```{julia} function AbstractMCMC.bundle_samples( samples, model::MiniModel, ::MHSampler, ::Any, ::Type{Chains}; kwargs... ) @@ -254,7 +252,7 @@ end; Let us check how our mini probabilistic programming language works. We define the probabilistic model: -```julia +```{julia} @mini_model function m(x) a ~ Normal(0.5, 1) b ~ Normal(a, 2) @@ -265,13 +263,13 @@ end; We perform inference with data `x = 3.0`: -```julia -sample(MiniModel(m, (x=3.0,)), MHSampler(), 1_000_000; chain_type=Chains) +```{julia} +sample(MiniModel(m, (x=3.0,)), MHSampler(), 1_000_000; chain_type=Chains, progress=false) ``` We compare these results with Turing. -```julia +```{julia} using Turing using PDMats @@ -282,13 +280,7 @@ using PDMats return nothing end -sample(turing_m(3.0), MH(ScalMat(2, 1.0)), 1_000_000) +sample(turing_m(3.0), MH(ScalMat(2, 1.0)), 1_000_000, progress=false) ``` -As you can see, with our simple probabilistic programming language and custom samplers we get similar results as Turing. - -```julia, echo=false, skip="notebook", tangle=false -if isdefined(Main, :TuringTutorials) - Main.TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) -end -``` +As you can see, with our simple probabilistic programming language and custom samplers we get similar results as Turing. \ No newline at end of file diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml new file mode 100644 index 000000000..1ab8da828 --- /dev/null +++ b/tutorials/15-gaussian-processes/Manifest.toml @@ -0,0 +1,2219 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "ef210273efb7c65b99cfa1e5b99ba970b3e506aa" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractGPs]] +deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] +git-tree-sha1 = "010e6b5e06a9a6b1be6b146a7f29d5848490cc64" +uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" +version = "0.5.21" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CSV]] +deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] +git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab" +uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +version = "0.10.14" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataDeps]] +deps = ["HTTP", "Libdl", "Reexport", "SHA", "Scratch", "p7zip_jll"] +git-tree-sha1 = "8ae085b71c462c2cb1cfedcb10c3c877ec6cf03f" +uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" +version = "0.7.13" + +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.21" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.KernelFunctions]] +deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] +git-tree-sha1 = "654dead9bd3313311b61087ab7a0cf2b7a935cb1" +uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" +version = "0.10.63" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.1" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.WeakRefStrings]] +deps = ["DataAPI", "InlineStrings", "Parsers"] +git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" +version = "1.4.2" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.WorkerUtilities]] +git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" +uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" +version = "1.6.1" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/15-gaussian-processes/Project.toml b/tutorials/15-gaussian-processes/Project.toml new file mode 100644 index 000000000..31c233e7f --- /dev/null +++ b/tutorials/15-gaussian-processes/Project.toml @@ -0,0 +1,10 @@ +[deps] +AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" +CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe" +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/15-gaussian-processes/index.qmd b/tutorials/15-gaussian-processes/index.qmd index 73eaa2b2a..32c2e04b0 100644 --- a/tutorials/15-gaussian-processes/index.qmd +++ b/tutorials/15-gaussian-processes/index.qmd @@ -1,9 +1,6 @@ --- title: Introduction to Gaussian Processes using JuliaGPs and Turing.jl -permalink: /tutorials/:name/ -redirect_from: tutorials/15-gaussian-processes/ -weave_options: - error : false +engine: julia --- [JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) packages integrate well with Turing.jl because they implement the Distributions.jl @@ -21,9 +18,9 @@ in the hole, depending on how far away from it they are. The goal of inference is to estimate the probability of any given shot being successful at a given distance. -Let's download the data and take a look at it: +### Let's download the data and take a look at it: -```julia +```{julia} using CSV, DataDeps, DataFrames ENV["DATADEPS_ALWAYS_ACCEPT"] = true @@ -58,7 +55,7 @@ $$ To do this, let's define our Turing.jl model: -```julia +```{julia} using AbstractGPs, LogExpFunctions, Turing @model function putting_model(d, n; jitter=1e-4) @@ -91,14 +88,14 @@ the data, to see whether there is anything that is obviously wrong. These kinds of prior predictive checks are straightforward to perform using Turing.jl, since it is possible to sample from the prior easily by just calling the model: -```julia +```{julia} m = putting_model(Float64.(df.distance), df.n) m().y ``` We make use of this to see what kinds of datasets we simulate from the prior: -```julia +```{julia} using Plots function plot_data(d, n, y, xticks, yticks) @@ -136,20 +133,20 @@ We'll make use of [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl), better performance than [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl/) on this example. See Turing.jl's docs on Automatic Differentiation for more info. -```julia +```{julia} using Random, ReverseDiff Turing.setadbackend(:reversediff) Turing.setrdcache(true) m_post = m | (y=df.y,) -chn = sample(Xoshiro(123456), m_post, NUTS(), 1_000) +chn = sample(Xoshiro(123456), m_post, NUTS(), 1_000, progress=false) ``` We can use these samples and the `posterior` function from `AbstractGPs` to sample from the posterior probability of success at any distance we choose: -```julia +```{julia} d_pred = 1:0.2:21 samples = map(generated_quantities(m_post, chn)[1:10:end]) do x return logistic.(rand(posterior(x.fx, x.f_latent)(d_pred, 1e-4))) @@ -162,4 +159,4 @@ scatter!(df.distance, df.y ./ df.n; label="", color=:red) We can see that the general trend is indeed down as the distance from the hole increases, and that if we move away from the data, the posterior uncertainty quickly inflates. This suggests that the model is probably going to do a reasonable job of interpolating -between observed data, but less good a job at extrapolating to larger distances. +between observed data, but less good a job at extrapolating to larger distances. \ No newline at end of file From dc08791e76bad8dbdf9f617142e1d2777d4418b2 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Fri, 17 May 2024 23:29:54 +0530 Subject: [PATCH 04/25] for-developers & contributing sections added --- .../docs-00-getting-started/Manifest.toml | 2202 +++++++++++++++++ .../docs-00-getting-started/Project.toml | 3 + tutorials/docs-00-getting-started/index.qmd | 40 +- .../docs-01-contributing-guide/index.qmd | 11 +- .../index.qmd | 19 +- .../index.qmd | 189 -- .../Manifest.toml | 1416 +++++++++++ .../Project.toml | 2 + .../index.qmd | 88 +- .../docs-05-for-developers-compiler/index.qmd | 30 +- .../Manifest.toml | 638 +++++ .../Project.toml | 4 + .../index.qmd | 195 +- .../index.qmd | 74 +- 14 files changed, 4468 insertions(+), 443 deletions(-) create mode 100644 tutorials/docs-00-getting-started/Manifest.toml create mode 100644 tutorials/docs-00-getting-started/Project.toml delete mode 100644 tutorials/docs-03-using-turing-sampler-viz/index.qmd create mode 100644 tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml create mode 100644 tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml create mode 100644 tutorials/docs-06-for-developers-interface/Manifest.toml create mode 100644 tutorials/docs-06-for-developers-interface/Project.toml diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml new file mode 100644 index 000000000..ff94f2a18 --- /dev/null +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.4" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.0+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "ab5b37dc4f98fc037527968852a6f9b2bdf9f32d" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.7" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.18" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.0+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.0+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "5055845dd316575ae2fc1f6dcb3545ff15fe547a" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.14" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.42.2+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.1" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/docs-00-getting-started/Project.toml b/tutorials/docs-00-getting-started/Project.toml new file mode 100644 index 000000000..d9c1da059 --- /dev/null +++ b/tutorials/docs-00-getting-started/Project.toml @@ -0,0 +1,3 @@ +[deps] +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-00-getting-started/index.qmd b/tutorials/docs-00-getting-started/index.qmd index 92bbacf51..c7f2de4e8 100644 --- a/tutorials/docs-00-getting-started/index.qmd +++ b/tutorials/docs-00-getting-started/index.qmd @@ -1,14 +1,9 @@ --- title: Getting Started -permalink: /docs/using-turing/get-started -redirect_from: docs/0-gettingstarted/ -weave_options: - error : false +engine: julia --- -# Getting Started - -## Installation +### Installation To use Turing, you need to install Julia first and then install Turing. @@ -20,27 +15,28 @@ You will need to install Julia 1.3 or greater, which you can get from [the offic Turing is an officially registered Julia package, so you can install a stable version of Turing by running the following in the Julia REPL: -```julia +```{julia} +#| output: false using Pkg Pkg.add("Turing") ``` You can check if all tests pass by running `Pkg.test("Turing")` (it might take a long time) -## Example +### Example Here's a simple example showing Turing in action. First, we can load the Turing and StatsPlots modules -```julia +```{julia} using Turing using StatsPlots ``` Then, we define a simple Normal model with unknown mean and variance -```julia +```{julia} @model function gdemo(x, y) s² ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s²)) @@ -51,21 +47,19 @@ end Then we can run a sampler to collect results. In this case, it is a Hamiltonian Monte Carlo sampler -```julia -chn = sample(gdemo(1.5, 2), NUTS(), 1000) +```{julia} +chn = sample(gdemo(1.5, 2), NUTS(), 1000, progress=false) ``` We can plot the results -```julia +```{julia} plot(chn) ``` -In this case, because we use the [normal-inverse gamma distribution](https://en.wikipedia.org/wiki/Normal-inverse-gamma_distribution) -as a [conjugate prior](https://en.wikipedia.org/wiki/Conjugate_prior), we can compute -its updated mean as follows: +In this case, because we use the normal-inverse gamma distribution as a conjugate prior, we can compute its updated mean as follows: -```julia +```{julia} s² = InverseGamma(2, 3) m = Normal(0, 1) data = [1.5, 2] @@ -77,7 +71,7 @@ mean_exp = (m.σ * m.μ + N * x_bar) / (m.σ + N) We can also compute the updated variance -```julia +```{julia} updated_alpha = shape(s²) + (N / 2) updated_beta = scale(s²) + @@ -86,11 +80,9 @@ updated_beta = variance_exp = updated_beta / (updated_alpha - 1) ``` -Finally, we can check if these expectations align with our HMC approximations -from earlier. We can compute samples from a normal-inverse gamma following the -equations given [here](https://en.wikipedia.org/wiki/Normal-inverse-gamma_distribution#Generating_normal-inverse-gamma_random_variates). +Finally, we can check if these expectations align with our HMC approximations from earlier. We can compute samples from a normal-inverse gamma following the equations given [here](https://en.wikipedia.org/wiki/Normal-inverse-gamma_distribution#Generating_normal-inverse-gamma_random_variates). -```julia +```{julia} function sample_posterior(alpha, beta, mean, lambda, iterations) samples = [] for i in 1:iterations @@ -104,7 +96,7 @@ end analytical_samples = sample_posterior(updated_alpha, updated_beta, mean_exp, 2, 1000); ``` -```julia +```{julia} density(analytical_samples; label="Posterior (Analytical)") density!(chn[:m]; label="Posterior (HMC)") ``` diff --git a/tutorials/docs-01-contributing-guide/index.qmd b/tutorials/docs-01-contributing-guide/index.qmd index 08c94289b..1ddab05f7 100644 --- a/tutorials/docs-01-contributing-guide/index.qmd +++ b/tutorials/docs-01-contributing-guide/index.qmd @@ -1,22 +1,19 @@ --- title: Contributing -permalink: /docs/contributing/guide -weave_options: - error : false --- -# Contributing - Turing is an open source project. If you feel that you have some relevant skills and are interested in contributing, then please do get in touch. You can contribute by opening issues on GitHub or implementing things yourself and making a pull request. We would also appreciate example models written using Turing. -Turing has a [style guide](%7B%7Bsite.baseurl%7D%7D/docs/contributing/style-guide). It is not strictly necessary to review it before making a pull request, but you may be asked to change portions of your code to conform with the style guide before it is merged. +Turing has a [style guide]({{< meta site-url >}}/dev/docs/contributing/style-guide). It is not strictly necessary to review it before making a pull request, but you may be asked to change portions of your code to conform with the style guide before it is merged. ## How to Contribute ### Getting Started - [Fork this repository](https://github.com/TuringLang/Turing.jl#fork-destination-box). + - Clone your fork on your local machine: `git clone https://github.com/your_username/Turing.jl`. + - Add a remote corresponding to this repository: `git remote add upstream https://github.com/TuringLang/Turing.jl`. @@ -27,4 +24,4 @@ Look at the [issues](https://github.com/TuringLang/Turing.jl/issues) page to fin ### Git Workflow -For more information on how the Git workflow typically functions, please see the [GitHub's introduction](https://guides.github.com/introduction/flow/) or [Julia's contribution guide](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md). +For more information on how the Git workflow typically functions, please see the [GitHub's introduction](https://guides.github.com/introduction/flow/) or [Julia's contribution guide](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md). \ No newline at end of file diff --git a/tutorials/docs-02-contributing-style-guide/index.qmd b/tutorials/docs-02-contributing-style-guide/index.qmd index 14db6d0e4..cd031df97 100644 --- a/tutorials/docs-02-contributing-style-guide/index.qmd +++ b/tutorials/docs-02-contributing-style-guide/index.qmd @@ -1,12 +1,8 @@ --- title: Style Guide -permalink: /docs/contributing/style-guide -weave_options: - error : false +engine: julia --- -# Style Guide - Most Turing code follows the [Invenia](https://invenia.ca/labs/)'s style guide. We would like to thank them for allowing us to access and use it. Please don't let not having read it stop you from contributing to Turing! No one will be annoyed if you open a PR with style that doesn't follow these conventions; we will just help you correct it before it gets merged. These conventions were originally written at Invenia, taking inspiration from a variety of sources including Python's [PEP8](http://legacy.python.org/dev/peps/pep-0008), Julia's [Notes for Contributors](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md), and Julia's [Style Guide](https://docs.julialang.org/en/v1/manual/style-guide/). @@ -40,7 +36,7 @@ Attempt to follow the [Julia Contribution Guidelines](https://github.com/JuliaLa If you are a user of Sublime Text we recommend that you have the following options in your Julia syntax specific settings. To modify these settings first open any Julia file (`*.jl`) in Sublime Text. Then navigate to: `Preferences > Settings - More > Syntax Specific - User` -```json +```{json} { "translate_tabs_to_spaces": true, "tab_size": 4, @@ -71,7 +67,8 @@ By default, Vim seems to guess that `.jl` files are written in Lisp. To ensure t Julia provides [test sets](https://docs.julialang.org/en/v1/stdlib/Test/#Working-with-Test-Sets-1) which allows developers to group tests into logical groupings. Test sets can be nested and ideally packages should only have a single "root" test set. It is recommended that the "runtests.jl" file contains the root test set which contains the remainder of the tests: -```julia eval=false +```{julia} +#| eval: false @testset "PkgExtreme" begin include("arithmetic.jl") include("utils.jl") @@ -84,7 +81,8 @@ The file structure of the `test` folder should mirror that of the `src` folder. Most tests are written in the form `@test x == y`. Since the `==` function doesn't take types into account, tests like the following are valid: `@test 1.0 == 1`. Avoid adding visual noise into test comparisons: -```julia eval=false +```{julia} +#| eval: false # Yes: @test value == 0 @@ -96,7 +94,8 @@ In cases where you are checking the numerical validity of a model's parameter es Here is an example of usage: -```julia eval=false +```{julia} +#| eval: false # Check that m and s are plus or minus one from 1.5 and 2.2, respectively. check_numerical(chain, [:m, :s], [1.5, 2.2]; atol=1.0) @@ -105,4 +104,4 @@ check_gdemo(chain; atol=0.1) # Checks the estimates for a default MoG model. check_MoGtest_default(chain; atol=0.1) -``` +``` \ No newline at end of file diff --git a/tutorials/docs-03-using-turing-sampler-viz/index.qmd b/tutorials/docs-03-using-turing-sampler-viz/index.qmd deleted file mode 100644 index 1ffb7e818..000000000 --- a/tutorials/docs-03-using-turing-sampler-viz/index.qmd +++ /dev/null @@ -1,189 +0,0 @@ ---- -title: Sampler Visualization -mathjax: true -permalink: /docs/using-turing/sampler-viz -weave_options: - error : false ---- - -# Sampler Visualization - -## Introduction - -## The Code - -For each sampler, we will use the same code to plot sampler paths. The block below loads the relevant libraries and defines a function for plotting the sampler's trajectory across the posterior. - -The Turing model definition used here is not especially practical, but it is designed in such a way as to produce visually interesting posterior surfaces to show how different samplers move along the distribution. - -```julia -ENV["GKS_ENCODING"] = "utf-8" # Allows the use of unicode characters in Plots.jl -using Plots -using StatsPlots -using Turing -using Random -using Bijectors - -# Set a seed. -Random.seed!(0) - -# Define a strange model. -@model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - bumps = sin(m) + cos(m) - m = m + 5 * bumps - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end - return s², m -end - -# Define our data points. -x = [1.5, 2.0, 13.0, 2.1, 0.0] - -# Set up the model call, sample from the prior. -model = gdemo(x) - -# Evaluate surface at coordinates. -evaluate(m1, m2) = logjoint(model, (m=m2, s²=invlink.(Ref(InverseGamma(2, 3)), m1))) - -function plot_sampler(chain; label="") - # Extract values from chain. - val = get(chain, [:s², :m, :lp]) - ss = link.(Ref(InverseGamma(2, 3)), val.s²) - ms = val.m - lps = val.lp - - # How many surface points to sample. - granularity = 100 - - # Range start/stop points. - spread = 0.5 - σ_start = minimum(ss) - spread * std(ss) - σ_stop = maximum(ss) + spread * std(ss) - μ_start = minimum(ms) - spread * std(ms) - μ_stop = maximum(ms) + spread * std(ms) - σ_rng = collect(range(σ_start; stop=σ_stop, length=granularity)) - μ_rng = collect(range(μ_start; stop=μ_stop, length=granularity)) - - # Make surface plot. - p = surface( - σ_rng, - μ_rng, - evaluate; - camera=(30, 65), - # ticks=nothing, - colorbar=false, - color=:inferno, - title=label, - ) - - line_range = 1:length(ms) - - scatter3d!( - ss[line_range], - ms[line_range], - lps[line_range]; - mc=:viridis, - marker_z=collect(line_range), - msw=0, - legend=false, - colorbar=false, - alpha=0.5, - xlabel="σ", - ylabel="μ", - zlabel="Log probability", - title=label, - ) - - return p -end; -``` - -## Samplers - -### Gibbs - -Gibbs sampling tends to exhibit a "jittery" trajectory. The example below combines `HMC` and `PG` sampling to traverse the posterior. - -```julia -c = sample(model, Gibbs(HMC(0.01, 5, :s²), PG(20, :m)), 1000) -plot_sampler(c) -``` - -### HMC - -Hamiltonian Monte Carlo (HMC) sampling is a typical sampler to use, as it tends to be fairly good at converging in a efficient manner. It can often be tricky to set the correct parameters for this sampler however, and the `NUTS` sampler is often easier to run if you don't want to spend too much time fiddling with step size and and the number of steps to take. Note however that `HMC` does not explore the positive values μ very well, likely due to the leapfrog and step size parameter settings. - -```julia -c = sample(model, HMC(0.01, 10), 1000) -plot_sampler(c) -``` - -### HMCDA - -The HMCDA sampler is an implementation of the Hamiltonian Monte Carlo with Dual Averaging algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. - -```julia -c = sample(model, HMCDA(200, 0.65, 0.3), 1000) -plot_sampler(c) -``` - -### MH - -Metropolis-Hastings (MH) sampling is one of the earliest Markov Chain Monte Carlo methods. MH sampling does not "move" a lot, unlike many of the other samplers implemented in Turing. Typically a much longer chain is required to converge to an appropriate parameter estimate. - -The plot below only uses 1,000 iterations of Metropolis-Hastings. - -```julia -c = sample(model, MH(), 1000) -plot_sampler(c) -``` - -As you can see, the MH sampler doesn't move parameter estimates very often. - -### NUTS - -The No U-Turn Sampler (NUTS) is an implementation of the algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. - -NUTS tends to be very good at traversing complex posteriors quickly. - -```julia -c = sample(model, NUTS(0.65), 1000) -plot_sampler(c) -``` - -The only parameter that needs to be set other than the number of iterations to run is the target acceptance rate. In the Hoffman and Gelman paper, they note that a target acceptance rate of 0.65 is typical. - -Here is a plot showing a very high acceptance rate. Note that it appears to "stick" to a mode and is not particularly good at exploring the posterior as compared to the 0.65 target acceptance ratio case. - -```julia -c = sample(model, NUTS(0.95), 1000) -plot_sampler(c) -``` - -An exceptionally low acceptance rate will show very few moves on the posterior: - -```julia -c = sample(model, NUTS(0.2), 1000) -plot_sampler(c) -``` - -### PG - -The Particle Gibbs (PG) sampler is an implementation of an algorithm from the paper "Particle Markov chain Monte Carlo methods" by Andrieu, Doucet, and Holenstein (2010). The interested reader can learn more [here](https://rss.onlinelibrary.wiley.com/doi/full/10.1111/j.1467-9868.2009.00736.x). - -The two parameters are the number of particles, and the number of iterations. The plot below shows the use of 20 particles. - -```julia -c = sample(model, PG(20), 1000) -plot_sampler(c) -``` - -Next, we plot using 50 particles. - -```julia -c = sample(model, PG(50), 1000) -plot_sampler(c) -``` diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml new file mode 100644 index 000000000..16d9381cb --- /dev/null +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml @@ -0,0 +1,1416 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "897cd59b84059b5de9a87d6c703f88590d9727a9" + +[[deps.ADTypes]] +git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.2.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.18.1" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.37.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml new file mode 100644 index 000000000..c78798405 --- /dev/null +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml @@ -0,0 +1,2 @@ +[deps] +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd index f8bb97613..d0ef838a0 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd @@ -1,21 +1,19 @@ --- title: How Turing implements AbstractMCMC -permalink: /docs/for-developers/how_turing_implements_abstractmcmc -weave_options: - error : false +engine: julia --- -# How Turing implements AbstractMCMC - -Prerequisite: [Interface guide](https://turinglang.org/dev/docs/for-developers/interface). +Prerequisite: [Interface guide](../interface/). ## Introduction Consider the following Turing, code block: -```julia +```{julia} using Turing +setprogress!(false) + @model function gdemo(x, y) s² ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s²)) @@ -36,7 +34,7 @@ Turing sampling methods (most of which are written [here](https://github.com/Tur First, we explain how Importance Sampling works in the abstract. Consider the model defined in the first code block. Mathematically, it can be written: -```math +```{.cell-bg} \begin{align*} s &\sim \text{InverseGamma}(2, 3), \\\\ m &\sim \text{Normal}(0, \sqrt{s}), \\\\ @@ -49,13 +47,13 @@ The **latent** variables are ``s`` and ``m``, the **observed** variables are ``x Importance Sampling produces independent samples ``(s_i, m_i)`` from the prior distribution. It also outputs unnormalized weights -```math +```{.cell-bg} w_i = \frac {p(x,y,s_i,m_i)} {p(s_i, m_i)} = p(x,y \mid s_i, m_i) ``` such that the empirical distribution -```math +```{.cell-bg} \frac{1}{N} \sum_{i =1}^N \frac {w_i} {\sum_{j=1}^N w_j} \delta_{(s_i, m_i)} ``` @@ -65,7 +63,7 @@ is a good approximation of the posterior. Recall the last line of the above code block: -```julia +```{julia} chn = sample(mod, alg, n_samples) ``` @@ -75,7 +73,7 @@ Here `sample` takes as arguments a **model** `mod`, an **algorithm** `alg`, and To define a **model**, you declare a joint distribution on variables in the `@model` macro, and specify which variables are observed and which should be inferred, as well as the value of the observed variables. Thus, when implementing Importance Sampling, -```julia +```{julia} mod = gdemo(1.5, 2) ``` @@ -88,7 +86,7 @@ This is all handled by DynamicPPL, more specifically [here](https://github.com/T An **algorithm** is just a sampling method: in Turing, it is a subtype of the abstract type `InferenceAlgorithm`. Defining an algorithm may require specifying a few high-level parameters. For example, "Hamiltonian Monte-Carlo" may be too vague, but "Hamiltonian Monte Carlo with 10 leapfrog steps per proposal and a stepsize of 0.01" is an algorithm. "Metropolis-Hastings" may be too vague, but "Metropolis-Hastings with proposal distribution `p`" is an algorithm. Thus -```julia +```{julia} stepsize = 0.01 L = 10 alg = HMC(stepsize, L) @@ -98,7 +96,7 @@ defines a Hamiltonian Monte-Carlo algorithm, an instance of `HMC`, which is a su In the case of Importance Sampling, there is no need to specify additional parameters: -```julia +```{julia} alg = IS() ``` @@ -112,16 +110,17 @@ Samplers are **not** the same as algorithms. An algorithm is a generic sampling Turing implements `AbstractMCMC`'s `AbstractSampler` with the `Sampler` struct defined in `DynamicPPL`. The most important attributes of an instance `spl` of `Sampler` are: - - `spl.alg`: the sampling method used, an instance of a subtype of `InferenceAlgorithm` - - `spl.state`: information about the sampling process, see [below](#States) +- `spl.alg`: the sampling method used, an instance of a subtype of `InferenceAlgorithm` +- `spl.state`: information about the sampling process, see [below](#states) When you call `sample(mod, alg, n_samples)`, Turing first uses `model` and `alg` to build an instance `spl` of `Sampler` , then calls the native `AbstractMCMC` function `sample(mod, spl, n_samples)`. When you define your own Turing sampling method, you must therefore build: - - a **sampler constructor** that uses a model and an algorithm to initialize an instance of `Sampler`. For Importance Sampling: +- a **sampler constructor** that uses a model and an algorithm to initialize an instance of `Sampler`. For Importance Sampling: -```{julia; eval=false} +```{julia} +#| eval: false function Sampler(alg::IS, model::Model, s::Selector) info = Dict{Symbol,Any}() state = ISState(model) @@ -129,7 +128,7 @@ function Sampler(alg::IS, model::Model, s::Selector) end ``` - - a **state** struct implementing `AbstractSamplerState` corresponding to your method: we cover this in the following paragraph. +- a **state** struct implementing `AbstractSamplerState` corresponding to your method: we cover this in the following paragraph. ### States @@ -137,7 +136,8 @@ The `vi` field contains all the important information about sampling: first and By default, you can use `SamplerState`, a concrete type defined in `inference/Inference.jl`, which extends `AbstractSamplerState` and has no field except for `vi`: -```{julia; eval=false} +```{julia} +#| eval: false mutable struct SamplerState{VIType<:VarInfo} <: AbstractSamplerState vi::VIType end @@ -145,22 +145,23 @@ end When doing Importance Sampling, we care not only about the values of the samples but also their weights. We will see below that the weight of each sample is also added to `spl.state.vi`. Moreover, the average -```math +```{.cell-bg} \frac 1 N \sum_{j=1}^N w_i = \frac 1 N \sum_{j=1}^N p(x,y \mid s_i, m_i) ``` of the sample weights is a particularly important quantity: - - it is used to **normalize** the **empirical approximation** of the posterior distribution - - its logarithm is the importance sampling **estimate** of the **log evidence** ``\log p(x, y)`` +- it is used to **normalize** the **empirical approximation** of the posterior distribution +- its logarithm is the importance sampling **estimate** of the **log evidence** ``\log p(x, y)`` To avoid having to compute it over and over again, `is.jl`defines an IS-specific concrete type `ISState` for sampler states, with an additional field `final_logevidence` containing -```math +```{.cell-bg} \log \frac 1 N \sum_{j=1}^N w_i. ``` -```{julia; eval=false} +```{julia} +#| eval: false mutable struct ISState{V<:VarInfo,F<:AbstractFloat} <: AbstractSamplerState vi::V final_logevidence::F @@ -172,7 +173,7 @@ ISState(model::Model) = ISState(VarInfo(model), 0.0) The following diagram summarizes the hierarchy presented above. -![hierarchy](how_turing_implements_abstractmcmc_files/hierarchy.png) +![](hierarchy.png) ## 2. Overload the functions used inside mcmcsample @@ -182,12 +183,13 @@ A lot of the things here are method-specific. However Turing also has some funct `AbstractMCMC` stores information corresponding to each individual sample in objects called `transition`, but does not specify what the structure of these objects could be. You could decide to implement a type `MyTransition` for transitions corresponding to the specifics of your methods. However, there are many situations in which the only information you need for each sample is: - - its value: ``\theta`` - - log of the joint probability of the observed data and this sample: `lp` +- its value: ``\theta`` +- log of the joint probability of the observed data and this sample: `lp` `Inference.jl` [defines](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/Inference.jl#L103) a struct `Transition`, which corresponds to this default situation -```{julia; eval=false} +```{julia} +#| eval: false struct Transition{T,F<:AbstractFloat} θ::T lp::F @@ -202,10 +204,10 @@ A crude summary, which ignores things like parallelism, is the following: `sample` calls `mcmcsample`, which calls - - `sample_init!` to set things up - - `step!` repeatedly to produce multiple new transitions - - `sample_end!` to perform operations once all samples have been obtained - - `bundle_samples` to convert a vector of transitions into a more palatable type, for instance a `Chain`. +- `sample_init!` to set things up +- `step!` repeatedly to produce multiple new transitions +- `sample_end!` to perform operations once all samples have been obtained +- `bundle_samples` to convert a vector of transitions into a more palatable type, for instance a `Chain`. You can of course implement all of these functions, but `AbstractMCMC` as well as Turing also provide default implementations for simple cases. For instance, importance sampling uses the default implementations of `sample_init!` and `bundle_samples`, which is why you don't see code for them inside `is.jl`. @@ -217,13 +219,13 @@ For an example of the former, consider **Importance Sampling** as defined in `is An example of the latter is the **Metropolis-Hastings** algorithm. At every step of sampling from a target posterior -```math +```{.cell-bg} p(\theta \mid x_{\text{obs}}), ``` in order to compute the acceptance ratio, you need to **evaluate the model joint density** -```math +```{.cell-bg} p\left(\theta_{\text{prop}}, x_{\text{obs}}\right) ``` @@ -236,13 +238,17 @@ Consider an instance `m` of `Model` and a sampler `spl`, with associated `VarInf - for every tilde statement in the `@model` macro, `m.f(vi, ...)` returns model-related information (samples, value of the model density, etc.), and adds it to `vi`. How does it do that? + recall that the code for `m.f(vi, ...)` is automatically generated by compilation of the `@model` macro + + for every tilde statement in the `@model` declaration, this code contains a call to `assume(vi, ...)` if the variable on the LHS of the tilde is a **model parameter to infer**, and `observe(vi, ...)` if the variable on the LHS of the tilde is an **observation** + + in the file corresponding to your sampling method (ie in `Turing.jl/src/inference/.jl`), you have **overloaded** `assume` and `observe`, so that they can modify `vi` to include the information and samples that you care about! + + at a minimum, `assume` and `observe` return the log density `lp` of the sample or observation. the model evaluation function then immediately calls `acclogp!!(vi, lp)`, which adds `lp` to the value of the log joint density stored in `vi`. Here's what `assume` looks like for Importance Sampling: -```{julia; eval=false} +```{julia} +#| eval: false function DynamicPPL.assume(rng, spl::Sampler{<:IS}, dist::Distribution, vn::VarName, vi) r = rand(rng, dist) push!(vi, vn, r, dist, spl) @@ -254,7 +260,8 @@ The function first generates a sample `r` from the distribution `dist` (the righ The `observe` function is even simpler: -```{julia; eval=false} +```{julia} +#| eval: false function DynamicPPL.observe(spl::Sampler{<:IS}, dist::Distribution, value, vi) return logpdf(dist, value) end @@ -273,14 +280,19 @@ We focus on the AbstractMCMC functions that are overridden in `is.jl` and execut + `model(rng, spl.state.vi, spl)`: call the model evaluation function * calls to `assume` add the samples from the prior ``s_i`` and ``m_i`` to `spl.state.vi` + * calls to both `assume` or `observe` are followed by the line `acclogp!!(vi, lp)`, where `lp` is an output of `assume` and `observe` + * `lp` is set to 0 after `assume`, and to the value of the density at the observation after `observe` + * when all the tilde statements have been covered, `spl.state.vi.logp[]` is the sum of the `lp`, i.e., the likelihood ``\log p(x, y \mid s_i, m_i) = \log p(x \mid s_i, m_i) + \log p(y \mid s_i, m_i)`` of the observations given the latent variable samples ``s_i`` and ``m_i``. + + `return Transition(spl)`: build a transition from the sampler, and return that transition * the transition's `vi` field is simply `spl.state.vi` + * the `lp` field contains the likelihood `spl.state.vi.logp[]` - When the, `n_samples` iterations are completed, `sample_end!` fills the `final_logevidence` field of `spl.state` - + it simply takes the logarithm of the average of the sample weights, using the log weights for numerical stability + + it simply takes the logarithm of the average of the sample weights, using the log weights for numerical stability \ No newline at end of file diff --git a/tutorials/docs-05-for-developers-compiler/index.qmd b/tutorials/docs-05-for-developers-compiler/index.qmd index 7553388f2..b5314ea5a 100644 --- a/tutorials/docs-05-for-developers-compiler/index.qmd +++ b/tutorials/docs-05-for-developers-compiler/index.qmd @@ -1,8 +1,6 @@ --- title: Turing Compiler Design -permalink: /docs/for-developers/compiler/ -weave_options: - error : false +engine: julia --- In this section, the current design of Turing's model "compiler" is described which enables Turing to perform various types of Bayesian inference without changing the model definition. The "compiler" is essentially just a macro that rewrites the user's model definition to a function that generates a `Model` struct that Julia's dispatch can operate on and that Julia's compiler can successfully do type inference on for efficient machine code generation. @@ -31,7 +29,8 @@ The following are the main jobs of the `@model` macro: A `model::Model` is a callable struct that one can sample from by calling -```{julia; eval=false} +```{julia} +#| eval: false (model::Model)([rng, varinfo, sampler, context]) ``` @@ -53,7 +52,8 @@ in `model.defaults`. They are used for constructing model instances with differe Let's take the following model as an example: -```{julia; eval=false} +```{julia} +#| eval: false @model function gauss( x=missing, y=1.0, ::Type{TV}=Vector{Float64} ) where {TV<:AbstractVector} @@ -73,7 +73,8 @@ The above call of the `@model` macro defines the function `gauss` with positiona such a way that every call of it returns a `model::Model`. Note that only the function body is modified by the `@model` macro, and the function signature is left untouched. It is also possible to implement models with keyword arguments such as -```{julia; eval=false} +```{julia} +#| eval: false @model function gauss( ::Type{TV}=Vector{Float64}; x=missing, y=1.0 ) where {TV<:AbstractVector} @@ -86,7 +87,8 @@ This would allow us to generate a model by calling `gauss(; x = rand(3))`. If an argument has a default value `missing`, it is treated as a random variable. For variables which require an initialization because we need to loop or broadcast over its elements, such as `x` above, the following needs to be done: -```{julia; eval=false} +```{julia} +#| eval: false if x === missing x = ... end @@ -95,7 +97,8 @@ end Note that since `gauss` behaves like a regular function it is possible to define additional dispatches in a second step as well. For instance, we could achieve the same behaviour by -```{julia; eval=false} +```{julia} +#| eval: false @model function gauss(x, y=1.0, ::Type{TV}=Vector{Float64}) where {TV<:AbstractVector} p = TV(undef, 2) return ... @@ -129,7 +132,8 @@ the `@. L ~ R` and `L .~ R` lines in the model. In the above example, `p[1] ~ InverseGamma(2, 3)` is replaced with something similar to -```{julia; eval=false} +```{julia} +#| eval: false #= REPL[25]:6 =# begin var"##tmpright#323" = InverseGamma(2, 3) @@ -171,7 +175,8 @@ random number generator `_rng` (since observations are never sampled). A similar transformation is performed for expressions of the form `@. L ~ R` and `L .~ R`. For instance, `@. x[1:2] ~ Normal(p[2], sqrt(p[1]))` is replaced with -```{julia; eval=false} +```{julia} +#| eval: false #= REPL[25]:8 =# begin var"##tmpright#331" = Normal.(p[2], sqrt.(p[1])) @@ -253,7 +258,8 @@ The easiest way to manually construct a `VarName` is to use the `@varname` macro The definition of `VarInfo` in `Turing` is: -```{julia; eval=false} +```{julia} +#| eval: false struct VarInfo{Tmeta, Tlogp} <: AbstractVarInfo metadata::Tmeta logp::Base.RefValue{Tlogp} @@ -287,4 +293,4 @@ Note that in order to make `md::Metadata` type stable, all the `md.vns` must hav However, in `Turing` models one cannot have this restriction, so we must use a type unstable `Metadata` if we want to use one `Metadata` instance for the whole model. This is what `UntypedVarInfo` does. A type unstable `Metadata` will still work but will have inferior performance. -To strike a balance between flexibility and performance when constructing the `spl::Sampler` instance, the model is first run by sampling the parameters in `P` from their priors using an `UntypedVarInfo`, i.e. a type unstable `Metadata` is used for all the variables. Then once all the symbols and distribution types have been identified, a `vi::TypedVarInfo` is constructed where `vi.metadata` is a `NamedTuple` mapping each symbol in `P` to a specialized instance of `Metadata`. So as long as each symbol in `P` is sampled from only one type of distributions, `vi::TypedVarInfo` will have fully concretely typed fields which brings out the peak performance of Julia. +To strike a balance between flexibility and performance when constructing the `spl::Sampler` instance, the model is first run by sampling the parameters in `P` from their priors using an `UntypedVarInfo`, i.e. a type unstable `Metadata` is used for all the variables. Then once all the symbols and distribution types have been identified, a `vi::TypedVarInfo` is constructed where `vi.metadata` is a `NamedTuple` mapping each symbol in `P` to a specialized instance of `Metadata`. So as long as each symbol in `P` is sampled from only one type of distributions, `vi::TypedVarInfo` will have fully concretely typed fields which brings out the peak performance of Julia. \ No newline at end of file diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml new file mode 100644 index 000000000..8a0fdf42d --- /dev/null +++ b/tutorials/docs-06-for-developers-interface/Manifest.toml @@ -0,0 +1,638 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "b65ceccfb7a4e7a325921a2f4e28163be77429a8" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + + [deps.Adapt.weakdeps] + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + + [deps.ConstructionBase.weakdeps] + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-06-for-developers-interface/Project.toml b/tutorials/docs-06-for-developers-interface/Project.toml new file mode 100644 index 000000000..fbde35d4c --- /dev/null +++ b/tutorials/docs-06-for-developers-interface/Project.toml @@ -0,0 +1,4 @@ +[deps] +AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" diff --git a/tutorials/docs-06-for-developers-interface/index.qmd b/tutorials/docs-06-for-developers-interface/index.qmd index 35d929f98..b498a9934 100644 --- a/tutorials/docs-06-for-developers-interface/index.qmd +++ b/tutorials/docs-06-for-developers-interface/index.qmd @@ -1,71 +1,47 @@ --- title: Interface Guide -permalink: /docs/for-developers/interface -weave_options: - error : false +engine: julia --- # The sampling interface -Turing implements a sampling interface (hosted at -[AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl)) that is intended to provide -a common framework for Markov chain Monte Carlo samplers. The interface presents several -structures and functions that one needs to overload in order to implement an -interface-compatible sampler. +Turing implements a sampling interface (hosted at [AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl)) that is intended to provide a common framework for Markov chain Monte Carlo samplers. The interface presents several structures and functions that one needs to overload in order to implement an interface-compatible sampler. This guide will demonstrate how to implement the interface without Turing. ## Interface overview -Any implementation of an inference method that uses the AbstractMCMC interface should -implement a subset of the following types and functions: - - 1. A subtype of `AbstractSampler`, defined as a mutable struct containing state information or sampler parameters. - 2. A function `sample_init!` which performs any necessary set-up (default: do not perform any set-up). - 3. A function `step!` which returns a transition that represents a single draw from the sampler. - 4. A function `transitions_init` which returns a container for the transitions obtained from the sampler - (default: return a `Vector{T}` of length `N` where `T` is the type of the transition obtained in the first step and `N` is the number of requested samples). - 5. A function `transitions_save!` which saves transitions to the container (default: save the transition of iteration `i` - at position `i` in the vector of transitions). - 6. A function `sample_end!` which handles any sampler wrap-up (default: do not perform any wrap-up). - 7. A function `bundle_samples` which accepts the container of transitions and returns a collection of samples - (default: return the vector of transitions). - -The interface methods with exclamation points are those that are intended to allow for -state mutation. Any mutating function is meant to allow mutation where needed -- you might -use: - - - `sample_init!` to run some kind of sampler preparation, before sampling begins. This - could mutate a sampler's state. - - `step!` might mutate a sampler flag after each sample. - - `sample_end!` contains any wrap-up you might need to do. If you were sampling in a - transformed space, this might be where you convert everything back to a constrained space. +Any implementation of an inference method that uses the AbstractMCMC interface should implement a subset of the following types and functions: + +1. A subtype of `AbstractSampler`, defined as a mutable struct containing state information or sampler parameters. +2. A function `sample_init!` which performs any necessary set-up (default: do not perform any set-up). +3. A function `step!` which returns a transition that represents a single draw from the sampler. +4. A function `transitions_init` which returns a container for the transitions obtained from the sampler (default: return a `Vector{T}` of length `N` where `T` is the type of the transition obtained in the first step and `N` is the number of requested samples). +5. A function `transitions_save!` which saves transitions to the container (default: save the transition of iteration `i` at position `i` in the vector of transitions). +6. A function `sample_end!` which handles any sampler wrap-up (default: do not perform any wrap-up). +7. A function `bundle_samples` which accepts the container of transitions and returns a collection of samples (default: return the vector of transitions). + +The interface methods with exclamation points are those that are intended to allow for state mutation. Any mutating function is meant to allow mutation where needed -- you might use: + +- `sample_init!` to run some kind of sampler preparation, before sampling begins. This could mutate a sampler's state. +- `step!` might mutate a sampler flag after each sample. +- `sample_end!` contains any wrap-up you might need to do. If you were sampling in a transformed space, this might be where you convert everything back to a constrained space. ## Why do you have an interface? -The motivation for the interface is to allow Julia's fantastic probabilistic programming -language community to have a set of standards and common implementations so we can all -thrive together. Markov chain Monte Carlo methods tend to have a very similar framework to -one another, and so a common interface should help more great inference methods built in -single-purpose packages to experience more use among the community. +The motivation for the interface is to allow Julia's fantastic probabilistic programming language community to have a set of standards and common implementations so we can all thrive together. Markov chain Monte Carlo methods tend to have a very similar framework to one another, and so a common interface should help more great inference methods built in single-purpose packages to experience more use among the community. ## Implementing Metropolis-Hastings without Turing -[Metropolis-Hastings](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo) is often the -first sampling method that people are exposed to. It is a very straightforward algorithm -and is accordingly the easiest to implement, so it makes for a good example. In this -section, you will learn how to use the types and functions listed above to implement the -Metropolis-Hastings sampler using the MCMC interface. +[Metropolis-Hastings](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo) is often the first sampling method that people are exposed to. It is a very straightforward algorithm and is accordingly the easiest to implement, so it makes for a good example. In this section, you will learn how to use the types and functions listed above to implement the Metropolis-Hastings sampler using the MCMC interface. -The full code for this implementation is housed in -[AdvancedMH.jl](https://github.com/TuringLang/AdvancedMH.jl). +The full code for this implementation is housed in [AdvancedMH.jl](https://github.com/TuringLang/AdvancedMH.jl). ### Imports -Let's begin by importing the relevant libraries. We'll import `AbstractMCMC`, which contains -the interface framework we'll fill out. We also need `Distributions` and `Random`. +Let's begin by importing the relevant libraries. We'll import `AbstractMCMC`, which contains the interface framework we'll fill out. We also need `Distributions` and `Random`. -```julia +```{julia} # Import the relevant libraries. using AbstractMCMC: AbstractMCMC using Distributions @@ -78,12 +54,9 @@ From `Distributions`, we need `Sampleable`, `VariateForm`, and `ValueSupport`, t ### Sampler -Let's begin our sampler definition by defining a sampler called `MetropolisHastings` which -is a subtype of `AbstractSampler`. Correct typing is very important for proper interface -implementation -- if you are missing a subtype, your method may not be dispatched to when -you call `sample`. +Let's begin our sampler definition by defining a sampler called `MetropolisHastings` which is a subtype of `AbstractSampler`. Correct typing is very important for proper interface implementation -- if you are missing a subtype, your method may not be dispatched to when you call `sample`. -```julia +```{julia} # Define a sampler type. struct MetropolisHastings{T,D} <: AbstractMCMC.AbstractSampler init_θ::T @@ -97,28 +70,17 @@ function MetropolisHastings(init_θ::Vector{<:Real}) end ``` -Above, we have defined a sampler that stores the initial parameterization of the prior, -and a distribution object from which proposals are drawn. You can have a struct that has no -fields, and simply use it for dispatching onto the relevant functions, or you can store a -large amount of state information in your sampler. +Above, we have defined a sampler that stores the initial parameterization of the prior, and a distribution object from which proposals are drawn. You can have a struct that has no fields, and simply use it for dispatching onto the relevant functions, or you can store a large amount of state information in your sampler. -The general intuition for what to store in your sampler struct is that anything you may -need to perform inference between samples but you don't want to store in a transition -should go into the sampler struct. It's the only way you can carry non-sample related state -information between `step!` calls. +The general intuition for what to store in your sampler struct is that anything you may need to perform inference between samples but you don't want to store in a transition should go into the sampler struct. It's the only way you can carry non-sample related state information between `step!` calls. ### Model -Next, we need to have a model of some kind. A model is a struct that's a subtype of -`AbstractModel` that contains whatever information is necessary to perform inference on -your problem. In our case we want to know the mean and variance parameters for a standard -Normal distribution, so we can keep our model to the log density of a Normal. +Next, we need to have a model of some kind. A model is a struct that's a subtype of `AbstractModel` that contains whatever information is necessary to perform inference on your problem. In our case we want to know the mean and variance parameters for a standard Normal distribution, so we can keep our model to the log density of a Normal. -Note that we only have to do this because we are not yet integrating the sampler with Turing --- Turing has a very sophisticated modelling engine that removes the need to define custom -model structs. +Note that we only have to do this because we are not yet integrating the sampler with Turing -- Turing has a very sophisticated modelling engine that removes the need to define custom model structs. -```julia +```{julia} # Define a model type. Stores the log density function. struct DensityModel{F<:Function} <: AbstractMCMC.AbstractModel ℓπ::F @@ -127,11 +89,9 @@ end ### Transition -The next step is to define some transition which we will return from each `step!` call. -We'll keep it simple by just defining a wrapper struct that contains the parameter draws -and the log density of that draw: +The next step is to define some transition which we will return from each `step!` call. We'll keep it simple by just defining a wrapper struct that contains the parameter draws and the log density of that draw: -```julia +```{julia} # Create a very basic Transition type, only stores the # parameter draws and the log probability of the draw. struct Transition{T,L} @@ -143,44 +103,42 @@ end Transition(model::DensityModel, θ) = Transition(θ, ℓπ(model, θ)) ``` -`Transition` can now store any type of parameter, whether it's a vector of draws from -multiple parameters or a single univariate draw. +`Transition` can now store any type of parameter, whether it's a vector of draws from multiple parameters or a single univariate draw. ### Metropolis-Hastings -Now it's time to get into the actual inference. We've defined all of the core pieces we -need, but we need to implement the `step!` function which actually performs inference. +Now it's time to get into the actual inference. We've defined all of the core pieces we need, but we need to implement the `step!` function which actually performs inference. As a refresher, Metropolis-Hastings implements a very basic algorithm: - 1. Pick some initial state, ``\theta_0``. +1. Pick some initial state, ``\theta_0``. - 2. For ``t`` in ``[1,N],`` do +2. For ``t`` in ``[1,N],`` do - + Generate a proposal parameterization ``\theta^\prime_t \sim q(\theta^\prime_t \mid \theta_{t-1}).`` - + Calculate the acceptance probability, ``\alpha = \text{min}\left[1,\frac{\pi(\theta'_t)}{\pi(\theta_{t-1})} \frac{q(\theta_{t-1} \mid \theta'_t)}{q(\theta'_t \mid \theta_{t-1})}) \right].`` - + If ``U \le \alpha`` where ``U \sim [0,1],`` then ``\theta_t = \theta'_t.`` Otherwise, ``\theta_t = \theta_{t-1}.`` + + Generate a proposal parameterization ``\theta^\prime_t \sim q(\theta^\prime_t \mid \theta_{t-1}).`` + + + Calculate the acceptance probability, ``\alpha = \text{min}\left[1,\frac{\pi(\theta'_t)}{\pi(\theta_{t-1})} \frac{q(\theta_{t-1} \mid \theta'_t)}{q(\theta'_t \mid \theta_{t-1})}) \right].`` -Of course, it's much easier to do this in the log space, so the acceptance probability is -more commonly written as + + If ``U \le \alpha`` where ``U \sim [0,1],`` then ``\theta_t = \theta'_t.`` Otherwise, ``\theta_t = \theta_{t-1}.`` -```math +Of course, it's much easier to do this in the log space, so the acceptance probability is more commonly written as + +```{.cell-bg} \log \alpha = \min\left[0, \log \pi(\theta'_t) - \log \pi(\theta_{t-1}) + \log q(\theta_{t-1} \mid \theta^\prime_t) - \log q(\theta\prime_t \mid \theta_{t-1}) \right]. ``` In interface terms, we should do the following: - 1. Make a new transition containing a proposed sample. - 2. Calculate the acceptance probability. - 3. If we accept, return the new transition, otherwise, return the old one. +1. Make a new transition containing a proposed sample. +2. Calculate the acceptance probability. +3. If we accept, return the new transition, otherwise, return the old one. ### Steps -The `step!` function is the function that performs the bulk of your inference. In our case, -we will implement two `step!` functions -- one for the very first iteration, and one for -every subsequent iteration. +The `step!` function is the function that performs the bulk of your inference. In our case, we will implement two `step!` functions -- one for the very first iteration, and one for every subsequent iteration. -```{julia; eval=false} +```{julia} +#| eval: false # Define the first step! function, which is called at the # beginning of sampling. Return the initial parameter used # to define the sampler. @@ -196,23 +154,16 @@ function AbstractMCMC.step!( end ``` -The first `step!` function just packages up the initial parameterization inside the -sampler, and returns it. We implicitly accept the very first parameterization. +The first `step!` function just packages up the initial parameterization inside the sampler, and returns it. We implicitly accept the very first parameterization. -The other `step!` function performs the usual steps from Metropolis-Hastings. Included are -several helper functions, `proposal` and `q`, which are designed to replicate the functions -in the pseudocode above. +The other `step!` function performs the usual steps from Metropolis-Hastings. Included are several helper functions, `proposal` and `q`, which are designed to replicate the functions in the pseudocode above. - - `proposal` generates a new proposal in the form of a `Transition`, which can be - univariate if the value passed in is univariate, or it can be multivariate if the - `Transition` given is multivariate. Proposals use a basic `Normal` or `MvNormal` proposal - distribution. - - `q` returns the log density of one parameterization conditional on another, according to - the proposal distribution. - - `step!` generates a new proposal, checks the acceptance probability, and then returns - either the previous transition or the proposed transition. +- `proposal` generates a new proposal in the form of a `Transition`, which can be univariate if the value passed in is univariate, or it can be multivariate if the `Transition` given is multivariate. Proposals use a basic `Normal` or `MvNormal` proposal distribution. +- `q` returns the log density of one parameterization conditional on another, according to the proposal distribution. +- `step!` generates a new proposal, checks the acceptance probability, and then returns either the previous transition or the proposed transition. -```{julia; eval=false} +```{julia} +#| eval: false # Define a function that makes a basic proposal depending on a univariate # parameterization or a multivariate parameterization. function propose(spl::MetropolisHastings, model::DensityModel, θ::Real) @@ -264,14 +215,10 @@ end ### Chains -In the default implementation, `sample` just returns a vector of all transitions. If -instead you would like to obtain a `Chains` object (e.g., to simplify downstream analysis), -you have to implement the `bundle_samples` function as well. It accepts the vector of -transitions and returns a collection of samples. Fortunately, our `Transition` is -incredibly simple, and we only need to build a little bit of functionality to accept custom -parameter names passed in by the user. +In the default implementation, `sample` just returns a vector of all transitions. If instead you would like to obtain a `Chains` object (e.g., to simplify downstream analysis), you have to implement the `bundle_samples` function as well. It accepts the vector of transitions and returns a collection of samples. Fortunately, our `Transition` is incredibly simple, and we only need to build a little bit of functionality to accept custom parameter names passed in by the user. -```{julia; eval=false} +```{julia} +#| eval: false # A basic chains constructor that works with the Transition struct we defined. function AbstractMCMC.bundle_samples( rng::AbstractRNG, @@ -301,18 +248,14 @@ end All done! -You can even implement different output formats by implementing `bundle_samples` for -different `chain_type`s, which can be provided as keyword argument to `sample`. As default -`sample` uses `chain_type = Any`. +You can even implement different output formats by implementing `bundle_samples` for different `chain_type`s, which can be provided as keyword argument to `sample`. As default `sample` uses `chain_type = Any`. ### Testing the implementation -Now that we have all the pieces, we should test the implementation by defining a model to -calculate the mean and variance parameters of a Normal distribution. We can do this by -constructing a target density function, providing a sample of data, and then running the -sampler with `sample`. +Now that we have all the pieces, we should test the implementation by defining a model to calculate the mean and variance parameters of a Normal distribution. We can do this by constructing a target density function, providing a sample of data, and then running the sampler with `sample`. -```{julia; eval=false} +```{julia} +#| eval: false # Generate a set of data from the posterior we want to estimate. data = rand(Normal(5, 3), 30) @@ -331,10 +274,10 @@ spl = MetropolisHastings([0.0, 0.0]) chain = sample(model, spl, 100000; param_names=["μ", "σ"]) ``` -If all the interface functions have been extended properly, you should get an output from -`display(chain)` that looks something like this: +If all the interface functions have been extended properly, you should get an output from `display(chain)` that looks something like this: -``` + +```{.cell-bg} Object of type Chains, with data of type 100000×3×1 Array{Float64,3} Iterations = 1:100000 @@ -363,12 +306,8 @@ Quantiles │ 2 │ σ │ 3.5097 │ 4.09732 │ 4.47805 │ 4.93094 │ 5.96821 │ ``` -It looks like we're extremely close to our true parameters of `Normal(5,3)`, though with a -fairly high variance due to the low sample size. +It looks like we're extremely close to our true parameters of `Normal(5,3)`, though with a fairly high variance due to the low sample size. ## Conclusion -We've seen how to implement the sampling interface for general projects. Turing's interface -methods are ever-evolving, so please open an issue at -[AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl) with feature requests or -problems. +We've seen how to implement the sampling interface for general projects. Turing's interface methods are ever-evolving, so please open an issue at [AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl) with feature requests or problems. \ No newline at end of file diff --git a/tutorials/docs-07-for-developers-variational-inference/index.qmd b/tutorials/docs-07-for-developers-variational-inference/index.qmd index f227647eb..9f7fe921f 100644 --- a/tutorials/docs-07-for-developers-variational-inference/index.qmd +++ b/tutorials/docs-07-for-developers-variational-inference/index.qmd @@ -1,8 +1,6 @@ --- title: Variational Inference -permalink: /docs/for-developers/variational_inference -weave_options: - error : false +engine: julia --- # Overview @@ -15,7 +13,7 @@ Here we'll have a look at the theory behind VI, but if you're interested in how In Bayesian inference one usually specifies a model as follows: given data ``\\{x_i\\}_{i = 1}^n``, -```math +```{.cell-bg} \begin{align*} \text{prior:} \quad z &\sim p(z) \\\\ \text{likelihood:} \quad x_i &\overset{\text{i.i.d.}}{\sim} p(x \mid z) \quad \text{where} \quad i = 1, \dots, n @@ -24,7 +22,7 @@ In Bayesian inference one usually specifies a model as follows: given data ``\\{ where ``\overset{\text{i.i.d.}}{\sim}`` denotes that the samples are identically independently distributed. Our goal in Bayesian inference is then to find the _posterior_ -```math +```{.cell-bg} p(z \mid \\{ x\_i \\}\_{i = 1}^n) \propto p(z) \prod\_{i=1}^{n} p(x\_i \mid z). ``` @@ -44,7 +42,7 @@ In VI, we're looking to approximate ``p(z \mid \\{ x_i \\}_{i = 1}^n )`` using s To approximate something you need a notion of what "close" means. In the context of probability densities a standard such "measure" of closeness is the _Kullback-Leibler (KL) divergence_ , though this is far from the only one. The KL-divergence is defined between two densities ``q(z)`` and ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` as -```math +```{.cell-bg} \begin{align*} \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \int \log \left( \frac{q(z)}{\prod\_{i = 1}^n p(z \mid x\_i)} \right) q(z) \mathrm{d}{z} \\\\ &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) - \sum\_{i = 1}^n \log p(z \mid x\_i) \right] \\\\ @@ -54,7 +52,7 @@ To approximate something you need a notion of what "close" means. In the context It's worth noting that unfortunately the KL-divergence is _not_ a metric/distance in the analysis-sense due to its lack of symmetry. On the other hand, it turns out that minimizing the KL-divergence that it's actually equivalent to maximizing the log-likelihood! Also, under reasonable restrictions on the densities at hand, -```math +```{.cell-bg} \mathrm{D\_{KL}}\left(q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = 0 \quad \iff \quad q(z) = p(z \mid \\{ x\_i \\}\_{i = 1}^n), \quad \forall z. ``` @@ -62,7 +60,7 @@ Therefore one could (and we will) attempt to approximate ``p(z \mid \\{ x_i \\}_ One can also show that ``\mathrm{D_{KL}} \ge 0``, which we'll need later. Finally notice that the KL-divergence is only well-defined when in fact ``q(z)`` is zero everywhere ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` is zero, i.e. -```math +```{.cell-bg} \mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right). ``` @@ -74,13 +72,13 @@ One major problem: as we can see in the definition of the KL-divergence, we need First off, recall that -```math +```{.cell-bg} p(z \mid x\_i) = \frac{p(x\_i, z)}{p(x\_i)} ``` so we can write -```math +```{.cell-bg} \begin{align*} \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) - \log p(x\_i) \right] \\\\ &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] + \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x_i) \right] \\\\ @@ -92,19 +90,19 @@ where in the last equality we used the fact that ``p(x_i)`` is independent of `` Now you're probably thinking "Oh great! Now you've introduced ``p(x_i)`` which we _also_ can't compute (in general)!". Woah. Calm down human. Let's do some more algebra. The above expression can be rearranged to -```math +```{.cell-bg} \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) + \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right]}\_{=: \mathrm{ELBO}(q)} = \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i) \right]}\_{\text{constant}}. ``` See? The left-hand side is _constant_ and, as we mentioned before, ``\mathrm{D_{KL}} \ge 0``. What happens if we try to _maximize_ the term we just gave the completely arbitrary name ``\mathrm{ELBO}``? Well, if ``\mathrm{ELBO}`` goes up while ``p(x_i)`` stays constant then ``\mathrm{D_{KL}}`` _has to_ go down! That is, the ``q(z)`` which _minimizes_ the KL-divergence is the same ``q(z)`` which _maximizes_ ``\mathrm{ELBO}(q)``: -```math +```{.cell-bg} \underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = \underset{q}{\mathrm{argmax}} \ \mathrm{ELBO}(q) ``` where -```math +```{.cell-bg} \begin{align*} \mathrm{ELBO}(q) &:= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] \\\\ &= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) + \mathbb{H}\left( q(z) \right) @@ -115,13 +113,13 @@ and ``\mathbb{H} \left(q(z) \right)`` denotes the [(differential) entropy](https Assuming joint ``p(x_i, z)`` and the entropy ``\mathbb{H}\left(q(z)\right)`` are both tractable, we can use a Monte-Carlo for the remaining expectation. This leaves us with the following tractable expression -```math +```{.cell-bg} \underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) \approx \underset{q}{\mathrm{argmax}} \ \widehat{\mathrm{ELBO}}(q) ``` where -```math +```{.cell-bg} \widehat{\mathrm{ELBO}}(q) = \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \log p(x\_i, z\_k) \right) + \mathbb{H} \left(q(z)\right) \quad \text{where} \quad z\_k \sim q(z) \quad \forall k = 1, \dots, m. ``` @@ -142,7 +140,7 @@ Finding the optimal ``q`` over _all_ possible densities of course isn't feasible We're going to make use of a particular such approach which goes under a bunch of different names: _reparametrization trick_, _path derivative_, etc. This refers to making the assumption that all elements ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` can be considered as reparameterizations of some base density, say ``\bar{q}(z)``. That is, if ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` then -```math +```{.cell-bg} z \sim q\_{\theta}(z) \quad \iff \quad z := g\_{\theta}(\tilde{z}) \quad \text{where} \quad \bar{z} \sim \bar{q}(z) ``` @@ -157,22 +155,28 @@ With all this nailed down, we eventually reach the section on **Automatic Differ So let's revisit the assumptions we've made at this point: 1. The variational posterior ``q\_{\theta}`` is in a parameterized family of densities denoted ``\mathscr{Q}\_{\Theta}``, with ``\theta \in \Theta``. + 2. ``\mathscr{Q}\_{\Theta}`` is a space of _reparameterizable_ densities with ``\bar{q}(z)`` as the base-density. + 3. The parameterization function ``g\_{\theta}`` is differentiable wrt. ``\theta``. + 4. Evaluation of the probability density ``q\_{\theta}(z)`` is differentiable wrt. ``\theta``. + 5. ``\mathbb{H}\left(q\_{\theta}(z)\right)`` is tractable. + 6. Evaluation of the joint density ``p(x, z)`` is tractable and differentiable wrt. ``z`` + 7. The support of ``q(z)`` is a subspace of the support of ``p(z \mid x)`` : ``\mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right)``. All of these are not *necessary* to do VI, but they are very convenient and results in a fairly flexible approach. One distribution which has a density satisfying all of the above assumptions _except_ (7) (we'll get back to this in second) for any tractable and differentiable ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` is the good ole' Gaussian/normal distribution: -```math +```{.cell-bg} z \sim \mathcal{N}(\mu, \Sigma) \quad \iff \quad z = g\_{\mu, L}(\bar{z}) := \mu + L^T \tilde{z} \quad \text{where} \quad \bar{z} \sim \bar{q}(z) := \mathcal{N}(1\_d, I\_{d \times d}) ``` where ``\Sigma = L L^T,`` with ``L`` obtained from the Cholesky-decomposition. Abusing notation a bit, we're going to write -```math +```{.cell-bg} \theta = (\mu, \Sigma) := (\mu\_1, \dots, \mu\_d, L\_{11}, \dots, L\_{1, d}, L\_{2, 1}, \dots, L\_{2, d}, \dots, L\_{d, 1}, \dots, L\_{d, d}). ``` @@ -180,7 +184,7 @@ With this assumption we finally have a tractable expression for ``\widehat{\math Though not necessary, we'll often make a *mean-field* assumption for the variational posterior ``q(z)``, i.e. assume independence between the latent variables. In this case, we'll write -```math +```{.cell-bg} \theta = (\mu, \sigma^2) := (\mu\_1, \dots, \mu\_d, \sigma\_1^2, \dots, \sigma\_d^2). ``` @@ -188,7 +192,7 @@ Though not necessary, we'll often make a *mean-field* assumption for the variati As a (trivial) example we could apply the approach described above to is the following generative model for ``p(z \mid \\{ x_i \\}\_{i = 1}^n)``: -```math +```{.cell-bg} \begin{align*} m &\sim \mathcal{N}(0, 1) \\\\ x\_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, 1), \quad i = 1, \dots, n. @@ -197,7 +201,7 @@ As a (trivial) example we could apply the approach described above to is the fol In this case ``z = m`` and we have the posterior defined ``p(m \mid \\{ x\_i \\}\_{i = 1}^n) = p(m) \prod\_{i = 1}^n p(x\_i \mid m)``. Then the variational posterior would be -```math +```{.cell-bg} q\_{\mu, \sigma} = \mathcal{N}(\mu, \sigma^2), \quad \text{where} \quad \mu \in \mathbb{R}, \ \sigma^2 \in \mathbb{R}^{ + }. ``` @@ -205,7 +209,7 @@ And since prior of ``m``, ``\mathcal{N}(0, 1)``, has non-zero probability on the But what about this generative model for ``p(z \mid \\{ x_i \\}_{i = 1}^n)``: -```math +```{.cell-bg} \begin{align*} s &\sim \mathrm{InverseGamma}(2, 3), \\\\ m &\sim \mathcal{N}(0, s), \\\\ @@ -215,7 +219,7 @@ But what about this generative model for ``p(z \mid \\{ x_i \\}_{i = 1}^n)``: with posterior ``p(s, m \mid \\{ x\_i \\}\_{i = 1}^n) = p(s) p(m \mid s) \prod\_{i = 1}^n p(x\_i \mid s, m)`` and the mean-field variational posterior ``q(s, m)`` will be -```math +```{.cell-bg} q\_{\mu\_1, \mu\_2, \sigma\_1^2, \sigma\_2^2}(s, m) = p\_{\mathcal{N}(\mu\_1, \sigma\_1^2)}(s)\ p\_{\mathcal{N}(\mu\_2, \sigma\_2^2)}(m), ``` @@ -223,7 +227,7 @@ where we've denoted the evaluation of the probability density of a Gaussian as ` Observe that ``\mathrm{InverseGamma}(2, 3)`` has non-zero probability only on ``\mathbb{R}^{ + } := (0, \infty)`` which is clearly not all of ``\mathbb{R}`` like ``q(s, m)`` has, i.e. -```math +```{.cell-bg} \mathrm{supp} \left( q(s, m) \right) \not\subseteq \mathrm{supp} \left( p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right). ``` @@ -237,37 +241,37 @@ For a lot of the standard (continuous) densities ``p`` we can actually construct If we want to compute the probability of ``x`` taking a value in some set ``A \subseteq \mathrm{supp} \left( p(x) \right)``, we have to integrate ``p(x)`` over ``A``, i.e. -```math +```{.cell-bg} \mathbb{P}_p(x \in A) = \int_A p(x) \mathrm{d}x. ``` This means that if we have a differentiable bijection ``f: \mathrm{supp} \left( q(x) \right) \to \mathbb{R}^d`` with differentiable inverse ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(x) \right)``, we can perform a change of variables -```math +```{.cell-bg} \mathbb{P}\_p(x \in A) = \int\_{f^{-1}(A)} p \left(f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| \mathrm{d}y, ``` where ``\mathcal{J}_{f^{-1}}(x)`` denotes the jacobian of ``f^{-1}`` evaluated at ``x``. Observe that this defines a probability distribution -```math +```{.cell-bg} \mathbb{P}\_{\tilde{p}}\left(y \in f^{-1}(A) \right) = \int\_{f^{-1}(A)} \tilde{p}(y) \mathrm{d}y, ``` since ``f^{-1}\left(\mathrm{supp} (p(x)) \right) = \mathbb{R}^d`` which has probability 1. This probability distribution has *density* ``\tilde{p}(y)`` with ``\mathrm{supp} \left( \tilde{p}(y) \right) = \mathbb{R}^d``, defined -```math +```{.cell-bg} \tilde{p}(y) = p \left( f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| ``` or equivalently -```math +```{.cell-bg} \tilde{p} \left( f(x) \right) = \frac{p(x)}{\big| \det \mathcal{J}\_{f}(x) \big|} ``` due to the fact that -```math +```{.cell-bg} \big| \det \mathcal{J}\_{f^{-1}}(y) \big| = \big| \det \mathcal{J}\_{f}(x) \big|^{-1} ``` @@ -277,7 +281,7 @@ due to the fact that So why is this is useful? Well, we're looking to generalize our approach using a normal distribution to cases where the supports don't match up. How about defining ``q(z)`` by -```math +```{.cell-bg} \begin{align*} \eta &\sim \mathcal{N}(\mu, \Sigma), \\\\ z &= f^{-1}(\eta), @@ -286,7 +290,7 @@ So why is this is useful? Well, we're looking to generalize our approach using a where ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(z \mid x) \right)`` is a differentiable bijection with differentiable inverse. Then ``z \sim q_{\mu, \Sigma}(z) \implies z \in \mathrm{supp} \left( p(z \mid x) \right)`` as we wanted. The resulting variational density is -```math +```{.cell-bg} q\_{\mu, \Sigma}(z) = p\_{\mathcal{N}(\mu, \Sigma)}\left( f(z) \right) \ \big| \det \mathcal{J}\_{f}(z) \big|. ``` @@ -294,7 +298,7 @@ Note that the way we've constructed ``q(z)`` here is basically a reverse of the If we want to write the ELBO explicitly in terms of ``\eta`` rather than ``z``, the first term in the ELBO becomes -```math +```{.cell-bg} \begin{align*} \mathbb{E}\_{z \sim q_{\mu, \Sigma}(z)} \left[ \log p(x\_i, z) \right] &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \Bigg[ \log \frac{p\left(x\_i, f^{-1}(\eta) \right)}{\big| \det \mathcal{J}_{f^{-1}}(\eta) \big|} \Bigg] \\\\ &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \log p\left(x\_i, f^{-1}(\eta) \right) \right] - \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \left| \det \mathcal{J}\_{f^{-1}}(\eta) \right| \right]. @@ -305,7 +309,7 @@ The entropy is invariant under change of variables, thus ``\mathbb{H} \left(q\_{ Hence, the resulting empirical estimate of the ELBO is -```math +```{.cell-bg} \begin{align*} \widehat{\mathrm{ELBO}}(q\_{\mu, \Sigma}) &= \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \left(\log p\left(x\_i, f^{-1}(\eta_k)\right) - \log \big| \det \mathcal{J}\_{f^{-1}}(\eta\_k) \big| \right) \right) + \mathbb{H} \left(p\_{\mathcal{N}(\mu, \Sigma)}(z)\right) \\\\ & \text{where} \quad z\_k \sim \mathcal{N}(\mu, \Sigma) \quad \forall k = 1, \dots, m @@ -314,4 +318,4 @@ Hence, the resulting empirical estimate of the ELBO is And maximizing this wrt. ``\mu`` and ``\Sigma`` is what's referred to as **Automatic Differentiation Variational Inference (ADVI)**! -Now if you want to try it out, [check out the tutorial on how to use ADVI in Turing.jl](../../tutorials/09-variational-inference)! +Now if you want to try it out, [check out the tutorial on how to use ADVI in Turing.jl](../../tutorials/09-variational-inference)! \ No newline at end of file From 89bc2aaeef119fb01e82948834eeb015b9278403 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Fri, 17 May 2024 23:36:21 +0530 Subject: [PATCH 05/25] using turing section added --- tutorials/docs-08-using-turing/index.qmd | 9 +- .../Manifest.toml | 1416 +++++++++++ .../Project.toml | 6 + .../docs-09-using-turing-advanced/index.qmd | 46 +- .../Manifest.toml | 1422 +++++++++++ .../Project.toml | 3 + .../docs-10-using-turing-autodiff/index.qmd | 11 +- .../Manifest.toml | 1469 +++++++++++ .../Project.toml | 3 + .../docs-11-using-turing-dynamichmc/index.qmd | 16 +- .../docs-12-using-turing-guide/Manifest.toml | 2259 +++++++++++++++++ .../docs-12-using-turing-guide/Project.toml | 6 + .../docs-12-using-turing-guide/index.qmd | 129 +- .../Manifest.toml | 1422 +++++++++++ .../Project.toml | 5 + .../index.qmd | 32 +- .../Manifest.toml | 2202 ++++++++++++++++ .../Project.toml | 4 + .../index.qmd | 37 +- .../Manifest.toml | 2202 ++++++++++++++++ .../Project.toml | 6 + .../index.qmd | 36 +- .../Manifest.toml | 1587 ++++++++++++ .../Project.toml | 8 + .../index.qmd | 32 +- 25 files changed, 14194 insertions(+), 174 deletions(-) create mode 100644 tutorials/docs-09-using-turing-advanced/Manifest.toml create mode 100644 tutorials/docs-09-using-turing-advanced/Project.toml create mode 100644 tutorials/docs-10-using-turing-autodiff/Manifest.toml create mode 100644 tutorials/docs-10-using-turing-autodiff/Project.toml create mode 100644 tutorials/docs-11-using-turing-dynamichmc/Manifest.toml create mode 100644 tutorials/docs-11-using-turing-dynamichmc/Project.toml create mode 100644 tutorials/docs-12-using-turing-guide/Manifest.toml create mode 100644 tutorials/docs-12-using-turing-guide/Project.toml create mode 100644 tutorials/docs-13-using-turing-performance-tips/Manifest.toml create mode 100644 tutorials/docs-13-using-turing-performance-tips/Project.toml create mode 100644 tutorials/docs-14-using-turing-quick-start/Manifest.toml create mode 100644 tutorials/docs-14-using-turing-quick-start/Project.toml create mode 100644 tutorials/docs-15-using-turing-sampler-viz/Manifest.toml create mode 100644 tutorials/docs-15-using-turing-sampler-viz/Project.toml create mode 100644 tutorials/docs-16-using-turing-external-samplers/Manifest.toml create mode 100644 tutorials/docs-16-using-turing-external-samplers/Project.toml diff --git a/tutorials/docs-08-using-turing/index.qmd b/tutorials/docs-08-using-turing/index.qmd index af940d9fa..48eba07ce 100644 --- a/tutorials/docs-08-using-turing/index.qmd +++ b/tutorials/docs-08-using-turing/index.qmd @@ -1,8 +1,5 @@ --- title: Turing Documentation -permalink: /docs/using-turing/ -weave_options: - error : false --- # Turing Documentation @@ -13,8 +10,4 @@ efficient Bayesian inference and decision making. Current features include: - General-purpose probabilistic programming with an intuitive modelling interface; - Robust, efficient [Hamiltonian Monte Carlo (HMC)](https://github.com/TuringLang/AdvancedHMC.jl) sampling for differentiable posterior distributions; - Particle MCMC sampling for complex posterior distributions involving discrete variables and stochastic control flow; and - - Gibbs sampling that combines particle MCMC, HMC and random-walk MH (RWMH) etc. - -```julia - -``` + - Gibbs sampling that combines particle MCMC, HMC and random-walk MH (RWMH) etc. \ No newline at end of file diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml new file mode 100644 index 000000000..612dda707 --- /dev/null +++ b/tutorials/docs-09-using-turing-advanced/Manifest.toml @@ -0,0 +1,1416 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "6cec53e876df73db3fdafb1c5341b0c2d969754c" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-09-using-turing-advanced/Project.toml b/tutorials/docs-09-using-turing-advanced/Project.toml new file mode 100644 index 000000000..60fac0188 --- /dev/null +++ b/tutorials/docs-09-using-turing-advanced/Project.toml @@ -0,0 +1,6 @@ +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-09-using-turing-advanced/index.qmd b/tutorials/docs-09-using-turing-advanced/index.qmd index f938270da..7a3f475c9 100644 --- a/tutorials/docs-09-using-turing-advanced/index.qmd +++ b/tutorials/docs-09-using-turing-advanced/index.qmd @@ -1,16 +1,13 @@ --- title: Advanced Usage -permalink: docs/using-turing/advanced -weave_options: - error : false +engine: julia --- -```{julia; eval=true; echo=false} +```{julia} +#| echo: false using Distributions, Turing, Random, Bijectors ``` -# Advanced Usage - ## How to Define a Customized Distribution `Turing.jl` supports the use of distributions from the Distributions.jl package. By extension, it also supports the use of customized distributions by defining them as subtypes of `Distribution` type of the Distributions.jl package, as well as corresponding functions. @@ -21,7 +18,7 @@ Below shows a workflow of how to define a customized distribution, using our own First, define a type of the distribution, as a subtype of a corresponding distribution type in the Distributions.jl package. -```{julia; eval=true} +```{julia} struct CustomUniform <: ContinuousUnivariateDistribution end ``` @@ -29,7 +26,7 @@ struct CustomUniform <: ContinuousUnivariateDistribution end Second, define `rand` and `logpdf`, which will be used to run the model. -```{julia; eval=true} +```{julia} # sample in [0, 1] Distributions.rand(rng::AbstractRNG, d::CustomUniform) = rand(rng) @@ -47,7 +44,7 @@ Certain samplers, such as `HMC`, require the domain of the priors to be unbounde To transform from `[0, 1]` to `ℝ` we can use the `Logit` bijector: -```{julia; eval=true} +```{julia} Bijectors.bijector(d::CustomUniform) = Logit(0.0, 1.0) ``` @@ -55,7 +52,7 @@ You'd do the exact same thing for `ContinuousMultivariateDistribution` and `Cont Alternatively, for `UnivariateDistribution` we can define the `minimum` and `maximum` of the distribution -```{julia; eval=true} +```{julia} Distributions.minimum(d::CustomUniform) = 0.0 Distributions.maximum(d::CustomUniform) = 1.0 ``` @@ -64,7 +61,7 @@ and `Bijectors.jl` will return a default `Bijector` called `TruncatedBijector` w Internally, Turing basically does the following when it needs to convert a constrained distribution to an unconstrained distribution, e.g. when sampling using `HMC`: -```{julia; eval=true} +```{julia} dist = Gamma(2,3) b = bijector(dist) transformed_dist = transformed(dist, b) # results in distribution with transformed support + correction for logpdf @@ -72,8 +69,8 @@ transformed_dist = transformed(dist, b) # results in distribution with transform and then we can call `rand` and `logpdf` as usual, where - - `rand(transformed_dist)` returns a sample in the unconstrained space, and - - `logpdf(transformed_dist, y)` returns the log density of the original distribution, but with `y` living in the unconstrained space. +- `rand(transformed_dist)` returns a sample in the unconstrained space, and +- `logpdf(transformed_dist, y)` returns the log density of the original distribution, but with `y` living in the unconstrained space. To read more about Bijectors.jl, check out [the project README](https://github.com/TuringLang/Bijectors.jl). @@ -85,7 +82,7 @@ However, since users should not have to deal with internal data structures, a ma that increases the accumulated log probability. For instance, this allows you to [include arbitrary terms in the likelihood](https://github.com/TuringLang/Turing.jl/issues/1332) -```julia +```{julia} using Turing myloglikelihood(x, μ) = loglikelihood(Normal(μ, 1), x) @@ -98,7 +95,7 @@ end and to [reject samples](https://github.com/TuringLang/Turing.jl/issues/1328): -```julia +```{julia} using Turing using LinearAlgebra @@ -115,13 +112,10 @@ using LinearAlgebra end ``` -Note that `@addlogprob!` always increases the accumulated log probability, regardless of the provided -sampling context. For instance, if you do not want to apply `Turing.@addlogprob!` when evaluating the -prior of your model but only when computing the log likelihood and the log joint probability, then you -should [check the type of the internal variable `__context_`](https://github.com/TuringLang/DynamicPPL.jl/issues/154) -such as +Note that `@addlogprob!` always increases the accumulated log probability, regardless of the provided sampling context. For instance, if you do not want to apply `Turing.@addlogprob!` when evaluating the prior of your model but only when computing the log likelihood and the log joint probability, then you should [check the type of the internal variable `__context_`](https://github.com/TuringLang/DynamicPPL.jl/issues/154) such as -```{julia; eval=false} +```{julia} +#| eval: false if DynamicPPL.leafcontext(__context__) !== Turing.PriorContext() Turing.@addlogprob! myloglikelihood(x, μ) end @@ -133,7 +127,7 @@ The `@model` macro accepts a function definition and rewrites it such that call Models can be constructed by hand without the use of a macro. Taking the `gdemo` model as an example, the macro-based definition -```julia +```{julia} using Turing @model function gdemo(x) @@ -150,7 +144,7 @@ model = gdemo([1.5, 2.0]) can be implemented also (a bit less generally) with the macro-free version -```julia +```{julia} using Turing # Create the model function. @@ -178,8 +172,4 @@ model = gdemo([1.5, 2.0]) ## Task Copying -Turing [copies](https://github.com/JuliaLang/julia/issues/4085) Julia tasks to -deliver efficient inference algorithms, but it also provides alternative slower -implementation as a fallback. Task copying is enabled by default. Task copying -requires us to use the `TapedTask` facility which is provided by -[Libtask](https://github.com/TuringLang/Libtask.jl) to create tasks. +Turing [copies](https://github.com/JuliaLang/julia/issues/4085) Julia tasks to deliver efficient inference algorithms, but it also provides alternative slower implementation as a fallback. Task copying is enabled by default. Task copying requires us to use the `TapedTask` facility which is provided by [Libtask](https://github.com/TuringLang/Libtask.jl) to create tasks. \ No newline at end of file diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml new file mode 100644 index 000000000..ca1ed0b2a --- /dev/null +++ b/tutorials/docs-10-using-turing-autodiff/Manifest.toml @@ -0,0 +1,1422 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "39edf0758c46988d8261ac978152a0ad94f6de94" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-10-using-turing-autodiff/Project.toml b/tutorials/docs-10-using-turing-autodiff/Project.toml new file mode 100644 index 000000000..bf112bd66 --- /dev/null +++ b/tutorials/docs-10-using-turing-autodiff/Project.toml @@ -0,0 +1,3 @@ +[deps] +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-10-using-turing-autodiff/index.qmd b/tutorials/docs-10-using-turing-autodiff/index.qmd index 9525572c9..250feb622 100644 --- a/tutorials/docs-10-using-turing-autodiff/index.qmd +++ b/tutorials/docs-10-using-turing-autodiff/index.qmd @@ -1,12 +1,8 @@ --- title: Automatic Differentiation -permalink: docs/using-turing/autodiff -weave_options: - error : false +engine: julia --- -# Automatic Differentiation - ## Switching AD Modes Turing currently supports four automatic differentiation (AD) backends for sampling: [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD; and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl), [Zygote](https://github.com/FluxML/Zygote.jl), and [Tracker](https://github.com/FluxML/Tracker.jl) for reverse-mode AD. @@ -33,7 +29,7 @@ And the previously used interface functions including `ADBackend`, `setadbackend Turing supports intermixed automatic differentiation methods for different variable spaces. The snippet below shows using `ForwardDiff` to sample the mean (`m`) parameter, and using `ReverseDiff` for the variance (`s`) parameter: -```julia +```{julia} using Turing using ReverseDiff @@ -53,9 +49,10 @@ c = sample( HMC(0.1, 5, :s²; adtype=AutoReverseDiff(false)), ), 1000, + progress=false, ) ``` Generally, reverse-mode AD, for instance `ReverseDiff`, is faster when sampling from variables of high dimensionality (greater than 20), while forward-mode AD, for instance `ForwardDiff`, is more efficient for lower-dimension variables. This functionality allows those who are performance sensitive to fine tune their automatic differentiation for their specific models. -If the differentiation method is not specified in this way, Turing will default to using whatever the global AD backend is. Currently, this defaults to `ForwardDiff`. +If the differentiation method is not specified in this way, Turing will default to using whatever the global AD backend is. Currently, this defaults to `ForwardDiff`. \ No newline at end of file diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml new file mode 100644 index 000000000..9eedcf759 --- /dev/null +++ b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml @@ -0,0 +1,1469 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "d10da1c0add3754bf2dbedbc935c84cd5faf5b39" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicHMC]] +deps = ["ArgCheck", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "LogExpFunctions", "ProgressMeter", "Random", "SimpleUnPack", "Statistics", "TensorCast"] +git-tree-sha1 = "9285af003a31272b4105c8e80d90b99eaf4b8c05" +uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb" +version = "3.4.7" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LazyStack]] +deps = ["ChainRulesCore", "Compat", "LinearAlgebra"] +git-tree-sha1 = "aff621f1f49e9262a34aaf0d57d02ea3b35aec60" +uuid = "1fad7336-0346-5a1a-a56f-a06ba010965b" +version = "0.1.3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.Strided]] +deps = ["LinearAlgebra", "StridedViews", "TupleTools"] +git-tree-sha1 = "40c69be0e1b72ee2f42923b7d1ff13e0b04e675c" +uuid = "5e0ebb24-38b0-5f93-81fe-25c709ecae67" +version = "2.0.4" + +[[deps.StridedViews]] +deps = ["LinearAlgebra", "PackageExtensionCompat"] +git-tree-sha1 = "5b765c4e401693ab08981989f74a36a010aa1d8e" +uuid = "4db3bf67-4bd7-4b4e-b153-31dc3fb37143" +version = "0.2.2" + + [deps.StridedViews.extensions] + StridedViewsCUDAExt = "CUDA" + + [deps.StridedViews.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCast]] +deps = ["ChainRulesCore", "Compat", "LazyStack", "LinearAlgebra", "MacroTools", "Random", "StaticArrays", "TransmuteDims"] +git-tree-sha1 = "82a477d3afe53673393dd387806e34cd682a5ac4" +uuid = "02d47bb6-7ce6-556a-be16-bb1710789e2b" +version = "0.4.8" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.TransmuteDims]] +deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Requires", "Strided"] +git-tree-sha1 = "5b6f1f2ba5e91983eabc47cb362f92d9a96b579f" +uuid = "24ddb15e-299a-5cc3-8414-dbddc482d9ca" +version = "0.1.16" + +[[deps.TupleTools]] +git-tree-sha1 = "41d61b1c545b06279871ef1a4b5fcb2cac2191cd" +uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" +version = "1.5.0" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-11-using-turing-dynamichmc/Project.toml b/tutorials/docs-11-using-turing-dynamichmc/Project.toml new file mode 100644 index 000000000..ec82c32d5 --- /dev/null +++ b/tutorials/docs-11-using-turing-dynamichmc/Project.toml @@ -0,0 +1,3 @@ +[deps] +DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-11-using-turing-dynamichmc/index.qmd b/tutorials/docs-11-using-turing-dynamichmc/index.qmd index 1c236a2bc..3b7cbe805 100644 --- a/tutorials/docs-11-using-turing-dynamichmc/index.qmd +++ b/tutorials/docs-11-using-turing-dynamichmc/index.qmd @@ -1,19 +1,17 @@ --- title: Using DynamicHMC -permalink: /docs/using-turing/dynamichmc/ -weave_options: - error : false +engine: julia --- -# Using DynamicHMC - Turing supports the use of [DynamicHMC](https://github.com/tpapp/DynamicHMC.jl) as a sampler through the `DynamicNUTS` function. To use the `DynamicNUTS` function, you must import the `DynamicHMC` package as well as Turing. Turing does not formally require `DynamicHMC` but will include additional functionality if both packages are present. -Here is a brief example of how to apply `DynamicNUTS`: +Here is a brief example: + +### How to apply `DynamicNUTS`: -```julia +```{julia} # Import Turing and DynamicHMC. using DynamicHMC, Turing @@ -27,5 +25,5 @@ end # Pull 2,000 samples using DynamicNUTS. dynamic_nuts = externalsampler(DynamicHMC.NUTS()) -chn = sample(gdemo(1.5, 2.0), dynamic_nuts, 2000) -``` +chn = sample(gdemo(1.5, 2.0), dynamic_nuts, 2000, progress=false) +``` \ No newline at end of file diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml new file mode 100644 index 000000000..cab738268 --- /dev/null +++ b/tutorials/docs-12-using-turing-guide/Manifest.toml @@ -0,0 +1,2259 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.23.1" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.4" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.0+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.2.0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.8.3" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e913a7eaf569d20da0791bb81e9d74c9b84cbf1c" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.15" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.3" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/docs-12-using-turing-guide/Project.toml b/tutorials/docs-12-using-turing-guide/Project.toml new file mode 100644 index 000000000..6fdadab66 --- /dev/null +++ b/tutorials/docs-12-using-turing-guide/Project.toml @@ -0,0 +1,6 @@ +[deps] +Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" +Optim = "429524aa-4258-5aef-a3af-852621145aeb" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-12-using-turing-guide/index.qmd b/tutorials/docs-12-using-turing-guide/index.qmd index 012274de3..c28f87bd1 100644 --- a/tutorials/docs-12-using-turing-guide/index.qmd +++ b/tutorials/docs-12-using-turing-guide/index.qmd @@ -1,12 +1,8 @@ --- title: Guide -permalink: /docs/using-turing/guide/ -weave_options: - error : false +engine: julia --- -# Guide - ## Basics ### Introduction @@ -23,7 +19,8 @@ Available inference methods include Importance Sampling (IS), Sequential Monte C Below is a simple Gaussian demo illustrate the basic usage of Turing.jl. -```julia + +```{julia} # Import packages. using Turing using StatsPlots @@ -39,13 +36,17 @@ end Note: As a sanity check, the prior expectation of `s²` is `mean(InverseGamma(2, 3)) = 3/(2 - 1) = 3` and the prior expectation of `m` is 0. This can be easily checked using `Prior`: -```julia +```{julia} +setprogress!(false) +``` + +```{julia} p1 = sample(gdemo(missing, missing), Prior(), 100000) ``` -We can perform inference by using the `sample` function, the first argument of which is our probabilistic program and the second of which is a sampler. More information on each sampler is located in the [API](%7B%7Bsite.baseurl%7D%7D/docs/library). +We can perform inference by using the `sample` function, the first argument of which is our probabilistic program and the second of which is a sampler. More information on each sampler is located in the [API]({{< meta site-url >}}/library). -```julia +```{julia} # Run sampler, collect results. c1 = sample(gdemo(1.5, 2), SMC(), 1000) c2 = sample(gdemo(1.5, 2), PG(10), 1000) @@ -57,7 +58,8 @@ c6 = sample(gdemo(1.5, 2), NUTS(0.65), 1000) The `MCMCChains` module (which is re-exported by Turing) provides plotting tools for the `Chain` objects returned by a `sample` function. See the [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) repository for more information on the suite of tools available for diagnosing MCMC chains. -```julia; eval = false +```{julia} +#| eval: false # Summarise results describe(c3) @@ -75,7 +77,7 @@ The arguments for each sampler are: - HMCDA: total leapfrog length, target accept ratio. - NUTS: number of adaptation steps (optional), target accept ratio. -For detailed information on the samplers, please review Turing.jl's [API](%7B%7Bsite.baseurl%7D%7D/docs/library) documentation. +For detailed information on the samplers, please review Turing.jl's [API]({{< meta site-url >}}/library) documentation. ### Modelling Syntax Explained @@ -83,7 +85,8 @@ Using this syntax, a probabilistic model is defined in Turing. The model functio In the following example, the defined model is conditioned to the data (arg*1 = 1, arg*2 = 2) by passing (1, 2) to the model function. -```{julia; eval=false} +```{julia} +#| eval: false @model function model_name(arg_1, arg_2) return ... end @@ -91,14 +94,16 @@ end The conditioned model can then be passed onto the sample function to run posterior inference. -```{julia; eval=false} +```{julia} +#| eval: false model_func = model_name(1, 2) chn = sample(model_func, HMC(..)) # Perform inference by sampling using HMC. ``` The returned chain contains samples of the variables in the model. -```{julia; eval=false} +```{julia} +#| eval: false var_1 = mean(chn[:var_1]) # Taking the mean of a variable named var_1. ``` @@ -108,7 +113,7 @@ parameters `"x[1]"`, `"x[2]"`, and `"x[3]"`, calling `group(chn, :x)` or `group( Turing does not have a declarative form. More generally, the order in which you place the lines of a `@model` macro matters. For example, the following example works: -```julia +```{julia} # Define a simple Normal model with unknown mean and variance. @model function model_function(y) s ~ Poisson(1) @@ -121,7 +126,8 @@ sample(model_function(10), SMC(), 100) But if we switch the `s ~ Poisson(1)` and `y ~ Normal(s, 1)` lines, the model will no longer sample correctly: -```{julia; eval=false} +```{julia} +#| eval: false # Define a simple Normal model with unknown mean and variance. @model function model_function(y) y ~ Normal(s, 1) @@ -140,7 +146,8 @@ Having multiple chains in the same object is valuable for evaluating convergence If you do not want parallelism or are on an older version Julia, you can sample multiple chains with the `mapreduce` function: -```{julia; eval=false} +```{julia} +#| eval: false # Replace num_chains below with however many chains you wish to sample. chains = mapreduce(c -> sample(model_fun, sampler, 1000), chainscat, 1:num_chains) ``` @@ -151,7 +158,8 @@ The `chains` variable now contains a `Chains` object which can be indexed by cha If you wish to perform multithreaded sampling and are running Julia 1.3 or greater, you can call `sample` with the following signature: -```julia; eval=false +```{julia} +#| eval: false using Turing @model function gdemo(x) @@ -177,7 +185,8 @@ To perform distributed sampling (using multiple processes), you must first impor Process parallel sampling can be done like so: -```julia; eval=false +```{julia} +#| eval: false # Load Distributed to add processes and the @everywhere macro. using Distributed @@ -214,14 +223,15 @@ sample(model, NUTS(), MCMCDistributed(), 1000, 4) Turing allows you to sample from a declared model's prior. If you wish to draw a chain from the prior to inspect your prior distributions, you can simply run -```julia; eval=false +```{julia} +#| eval: false chain = sample(model, Prior(), n_samples) ``` You can also run your model (as if it were a function) from the prior distribution, by calling the model without specifying inputs or a sampler. In the below example, we specify a `gdemo` model which returns two variables, `x` and `y`. The model includes `x` and `y` as arguments, but calling the function without passing in `x` or `y` means that Turing's compiler will assume they are missing values to draw from the relevant distribution. The `return` statement is necessary to retrieve the sampled `x` and `y` values. Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. -```julia +```{julia} @model function gdemo(x, y) s² ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s²)) @@ -233,7 +243,7 @@ end Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. -```julia +```{julia} # Samples from p(x,y) g_prior_sample = gdemo(missing, missing) g_prior_sample() @@ -245,7 +255,7 @@ g_prior_sample() Inputs to the model that have a value `missing` are treated as parameters, aka random variables, to be estimated/sampled. This can be useful if you want to simulate draws for that parameter, or if you are sampling from a conditional distribution. Turing supports the following syntax: -```julia +```{julia} @model function gdemo(x, ::Type{T}=Float64) where {T} if x === missing # Initialize `x` if missing @@ -267,7 +277,7 @@ Note the need to initialize `x` when missing since we are iterating over its ele Turing also supports mixed `missing` and non-`missing` values in `x`, where the missing ones will be treated as random variables to be sampled while the others get treated as observations. For example: -```julia +```{julia} @model function gdemo(x) s² ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s²)) @@ -285,7 +295,8 @@ c = sample(model, HMC(0.01, 5), 500) Arguments to Turing models can have default values much like how default values work in normal Julia functions. For instance, the following will assign `missing` to `x` and treat it as a random variable. If the default value is not `missing`, `x` will be assigned that value and will be treated as an observation instead. -```julia + +```{julia} using Turing @model function generative(x=missing, ::Type{T}=Float64) where {T<:Real} @@ -323,11 +334,13 @@ For example, let `c` be a `Chain`: The element type of a vector (or matrix) of random variables should match the `eltype` of the its prior distribution, `<: Integer` for discrete distributions and `<: AbstractFloat` for continuous distributions. Moreover, if the continuous random variable is to be sampled using a Hamiltonian sampler, the vector's element type needs to either be: - 1. `Real` to enable auto-differentiation through the model which uses special number types that are sub-types of `Real`, or - 2. Some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Float64) where {T}`. - Similarly, when using a particle sampler, the Julia variable used should either be: - 3. An `Array`, or - 4. An instance of some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Vector{Float64}) where {T}`. +1. `Real` to enable auto-differentiation through the model which uses special number types that are sub-types of `Real`, or + +2. Some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Float64) where {T}`. Similarly, when using a particle sampler, the Julia variable used should either be: + +3. An `Array`, or + +4. An instance of some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Vector{Float64}) where {T}`. ### Querying Probabilities from Model or Chain @@ -335,7 +348,7 @@ Turing offers three functions: [`loglikelihood`](https://turinglang.org/DynamicP Let's look at a simple model called `gdemo`: -```julia +```{julia} @model function gdemo0() s ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s)) @@ -345,39 +358,39 @@ end If we observe x to be 1.0, we can condition the model on this datum using the [`condition`](https://turinglang.org/DynamicPPL.jl/dev/api/#AbstractPPL.condition) syntax: -```julia +```{julia} model = gdemo0() | (x=1.0,) ``` Now, let's compute the log-likelihood of the observation given specific values of the model parameters, `s` and `m`: -```julia +```{julia} loglikelihood(model, (s=1.0, m=1.0)) ``` We can easily verify that value in this case: -```julia +```{julia} logpdf(Normal(1.0, 1.0), 1.0) ``` We can also compute the log-prior probability of the model for the same values of s and m: -```julia +```{julia} logprior(model, (s=1.0, m=1.0)) ``` -```julia +```{julia} logpdf(InverseGamma(2, 3), 1.0) + logpdf(Normal(0, sqrt(1.0)), 1.0) ``` Finally, we can compute the log-joint probability of the model parameters and data: -```julia +```{julia} logjoint(model, (s=1.0, m=1.0)) ``` -```julia +```{julia} logpdf(Normal(1.0, 1.0), 1.0) + logpdf(InverseGamma(2, 3), 1.0) + logpdf(Normal(0, sqrt(1.0)), 1.0) @@ -385,11 +398,11 @@ logpdf(Normal(0, sqrt(1.0)), 1.0) Querying with `Chains` object is easy as well: -```julia +```{julia} chn = sample(model, Prior(), 10) ``` -```julia +```{julia} loglikelihood(model, chn) ``` @@ -401,7 +414,7 @@ Mode estimation only works when all model parameters are continuous -- discrete To understand how mode estimation works, let us first load Turing and Optim to enable mode estimation, and then declare a model: -```julia +```{julia} # Note that loading Optim explicitly is required for mode estimation to function, # as Turing does not load the opimization suite unless Optim is loaded as well. using Turing @@ -419,7 +432,7 @@ end Once the model is defined, we can construct a model instance as we normally would: -```julia +```{julia} # Create some data to pass to the model. data = [1.5, 2.0] @@ -429,7 +442,7 @@ model = gdemo(data) Mode estimation is typically quick and easy at this point. Turing extends the function `Optim.optimize` and accepts the structs `MLE()` or `MAP()`, which inform Turing whether to provide an MLE or MAP estimate, respectively. By default, the [LBFGS optimizer](https://julianlsolvers.github.io/Optim.jl/stable/#algo/lbfgs/) is used, though this can be changed. Basic usage is: -```julia +```{julia} # Generate a MLE estimate. mle_estimate = optimize(model, MLE()) @@ -439,7 +452,8 @@ map_estimate = optimize(model, MAP()) If you wish to change to a different optimizer, such as `NelderMead`, simply place your optimizer in the third argument slot: -```julia; eval=false +```{julia} +#| eval: false # Use NelderMead mle_estimate = optimize(model, MLE(), NelderMead()) @@ -458,7 +472,8 @@ mle_estimate = optimize(model, MLE(), AcceleratedGradientDescent()) Some methods may have trouble calculating the mode because not enough iterations were allowed, or the target function moved upwards between function calls. Turing will warn you if Optim fails to converge by running `Optim.converge`. A typical solution to this might be to add more iterations, or allow the optimizer to increase between function iterations: -```julia; eval=false +```{julia} +#| eval: false # Increase the iterations and allow function eval to increase between calls. mle_estimate = optimize( model, MLE(), Newton(), Optim.Options(; iterations=10_000, allow_f_increases=true) @@ -473,7 +488,8 @@ Turing extends several methods from `StatsBase` that can be used to analyze your For example, let's examine our ML estimate from above using `coeftable`: -```julia; eval=false +```{julia} +#| eval: false # Import StatsBase to use it's statistical methods. using StatsBase @@ -481,6 +497,7 @@ using StatsBase coeftable(mle_estimate) ``` + ``` ───────────────────────────── estimate stderror tstat @@ -490,13 +507,15 @@ m 1.75 0.176777 9.8995 ───────────────────────────── ``` + Standard errors are calculated from the Fisher information matrix (inverse Hessian of the log likelihood or log joint). t-statistics will be familiar to frequentist statisticians. Warning -- standard errors calculated in this way may not always be appropriate for MAP estimates, so please be cautious in interpreting them. #### Sampling with the MAP/MLE as initial states You can begin sampling your chain from an MLE/MAP estimate by extracting the vector of parameter values and providing it to the `sample` function with the keyword `initial_params`. For example, here is how to sample from the full posterior using the MAP estimate as the starting point: -```julia; eval=false +```{julia} +#| eval: false # Generate an MAP estimate. map_estimate = optimize(model, MAP()) @@ -510,7 +529,7 @@ chain = sample(model, NUTS(), 1_000; initial_params=map_estimate.values.array) Turing.jl provides a Gibbs interface to combine different samplers. For example, one can combine an `HMC` sampler with a `PG` sampler to run inference for different parameters in a single model as below. -```julia +```{julia} @model function simple_choice(xs) p ~ Beta(2, 2) z ~ Bernoulli(p) @@ -528,9 +547,9 @@ simple_choice_f = simple_choice([1.5, 2.0, 0.3]) chn = sample(simple_choice_f, Gibbs(HMC(0.2, 3, :p), PG(20, :z)), 1000) ``` -The `Gibbs` sampler can be used to specify unique automatic differentiation backends for different variable spaces. Please see the [Automatic Differentiation](%7B%7Bsite.baseurl%7D%7D/docs/using-turing/autodiff) article for more. +The `Gibbs` sampler can be used to specify unique automatic differentiation backends for different variable spaces. Please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article for more. -For more details of compositional sampling in Turing.jl, please check the corresponding [paper](http://proceedings.mlr.press/v84/ge18b.html). +For more details of compositional sampling in Turing.jl, please check the corresponding [paper](https://proceedings.mlr.press/v84/ge18b.html). ### Working with filldist and arraydist @@ -543,7 +562,7 @@ Note that, in contrast to the product distribution interface provided by Distrib Example usage: -```julia +```{julia} @model function demo(x, g) k = length(unique(g)) a ~ filldist(Exponential(), k) # = Product(fill(Exponential(), k)) @@ -559,7 +578,7 @@ Note that in contrast to the product distribution interface provided by Distribu Example usage: -```julia +```{julia} @model function demo(x, g) k = length(unique(g)) a ~ arraydist([Exponential(i) for i in 1:k]) @@ -572,7 +591,7 @@ end Turing.jl wraps its samples using `MCMCChains.Chain` so that all the functions working for `MCMCChains.Chain` can be re-used in Turing.jl. Two typical functions are `MCMCChains.describe` and `MCMCChains.plot`, which can be used as follows for an obtained chain `chn`. For more information on `MCMCChains`, please see the [GitHub repository](https://github.com/TuringLang/MCMCChains.jl). -```julia +```{julia} describe(chn) # Lists statistics of the samples. plot(chn) # Plots statistics of the samples. ``` @@ -591,7 +610,7 @@ ForwardDiff (Turing's default AD backend) uses forward-mode chunk-wise AD. The c Turing supports four packages of automatic differentiation (AD) in the back end during sampling. The default AD backend is [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD. Three reverse-mode AD backends are also supported, namely [Tracker](https://github.com/FluxML/Tracker.jl), [Zygote](https://github.com/FluxML/Zygote.jl) and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl). `Zygote` and `ReverseDiff` are supported optionally if explicitly loaded by the user with `using Zygote` or `using ReverseDiff` next to `using Turing`. -For more information on Turing's automatic differentiation backend, please see the [Automatic Differentiation](%7B%7Bsite.baseurl%7D%7D/docs/using-turing/autodiff) article. +For more information on Turing's automatic differentiation backend, please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article. #### Progress Logging @@ -607,4 +626,4 @@ For Jupyter notebooks the default backend is In all other cases, progress logs are displayed with [TerminalLoggers.jl](https://github.com/c42f/TerminalLoggers.jl). Alternatively, if you provide a custom visualization backend, Turing uses it instead of the -default backend. +default backend. \ No newline at end of file diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml new file mode 100644 index 000000000..00ee2621e --- /dev/null +++ b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml @@ -0,0 +1,1422 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Memoization]] +deps = ["MacroTools"] +git-tree-sha1 = "073f080e733bc6697411901224ed4fd15fefaffa" +uuid = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" +version = "0.2.1" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-13-using-turing-performance-tips/Project.toml b/tutorials/docs-13-using-turing-performance-tips/Project.toml new file mode 100644 index 000000000..f9c7524b0 --- /dev/null +++ b/tutorials/docs-13-using-turing-performance-tips/Project.toml @@ -0,0 +1,5 @@ +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Memoization = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-13-using-turing-performance-tips/index.qmd b/tutorials/docs-13-using-turing-performance-tips/index.qmd index ce325e000..17555c5b9 100644 --- a/tutorials/docs-13-using-turing-performance-tips/index.qmd +++ b/tutorials/docs-13-using-turing-performance-tips/index.qmd @@ -1,12 +1,8 @@ --- title: Performance Tips -permalink: /docs/using-turing/performancetips -weave_options: - error : false +engine: julia --- -# Performance Tips - This section briefly summarises a few common techniques to ensure good performance when using Turing. We refer to [the Julia documentation](https://docs.julialang.org/en/v1/manual/performance-tips/index.html) for general techniques to ensure good performance of Julia programs. @@ -16,7 +12,7 @@ It is generally preferable to use multivariate distributions if possible. The following example: -```julia +```{julia} using Turing @model function gmodel(x) m ~ Normal() @@ -28,7 +24,7 @@ end can be directly expressed more efficiently using a simple transformation: -```julia +```{julia} using FillArrays @model function gmodel(x) @@ -55,7 +51,7 @@ For efficient gradient-based inference, e.g. using HMC, NUTS or ADVI, it is impo The following example with abstract types -```julia +```{julia} @model function tmodel(x, y) p, n = size(x) params = Vector{Real}(undef, n) @@ -70,7 +66,7 @@ end can be transformed into the following representation with concrete types: -```julia +```{julia} @model function tmodel(x, y, ::Type{T}=Float64) where {T} p, n = size(x) params = Vector{T}(undef, n) @@ -85,7 +81,7 @@ end Alternatively, you could use `filldist` in this example: -```julia +```{julia} @model function tmodel(x, y) params ~ filldist(truncated(Normal(), 0, Inf), size(x, 2)) a = x * params @@ -98,7 +94,7 @@ They are marked in red in the Julia REPL. For example, consider the following simple program: -```julia +```{julia} @model function tmodel(x) p = Vector{Real}(undef, 1) p[1] ~ Normal() @@ -109,7 +105,8 @@ end We can use -```{julia; eval=false} +```{julia} +#| eval: false using Random model = tmodel(1.0) @@ -130,7 +127,8 @@ to inspect type inference in the model. Often when performing Gibbs sampling, one can save computational time by caching the output of expensive functions. The cached values can then be reused in future Gibbs sub-iterations which do not change the inputs to this expensive function. For example in the following model -```{julia; eval=false} +```{julia} +#| eval: false @model function demo(x) a ~ Gamma() b ~ Normal() @@ -146,7 +144,8 @@ when only updating `a` in a Gibbs sub-iteration, keeping `b` the same, the value To use `Memoization.jl`, simply define memoized versions of `function1` and `function2` as such: -```{julia; eval=false} +```{julia} +#| eval: false using Memoization @memoize memoized_function1(args...) = function1(args...) @@ -155,7 +154,8 @@ using Memoization Then define the `Turing` model using the new functions as such: -```{julia; eval=false} +```{julia} +#| eval: false @model function demo(x) a ~ Gamma() b ~ Normal() @@ -163,4 +163,4 @@ Then define the `Turing` model using the new functions as such: d = memoized_function2(b) return x .~ Normal(c, d) end -``` +``` \ No newline at end of file diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml new file mode 100644 index 000000000..4ad98fd2e --- /dev/null +++ b/tutorials/docs-14-using-turing-quick-start/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "98395e891759166da437a82de77230ae2de18e0f" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.4" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.0+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e913a7eaf569d20da0791bb81e9d74c9b84cbf1c" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.15" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/docs-14-using-turing-quick-start/Project.toml b/tutorials/docs-14-using-turing-quick-start/Project.toml new file mode 100644 index 000000000..c43a70e12 --- /dev/null +++ b/tutorials/docs-14-using-turing-quick-start/Project.toml @@ -0,0 +1,4 @@ +[deps] +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-14-using-turing-quick-start/index.qmd b/tutorials/docs-14-using-turing-quick-start/index.qmd index b5f501b80..f17ad0193 100644 --- a/tutorials/docs-14-using-turing-quick-start/index.qmd +++ b/tutorials/docs-14-using-turing-quick-start/index.qmd @@ -1,25 +1,22 @@ --- -title: Quickstart -permalink: /docs/using-turing/quick-start -redirect_from: docs/1-quickstart/ -weave_options: - error : false +pagetitle: Quick Start +title: Probabilistic Programming in Thirty Seconds +engine: julia --- -# Probabilistic Programming in Thirty Seconds - If you are already well-versed in probabilistic programming and want to take a quick look at how Turing's syntax works or otherwise just want a model to start with, we have provided a complete Bayesian coin-flipping model below. -This example can be run wherever you have Julia installed (see [Getting Started](%7B%7Bsite.baseurl%7D%7D/docs/using-turing/get-started)), but you will need to install the packages `Turing` and `StatsPlots` if you have not done so already. +This example can be run wherever you have Julia installed (see [Getting Started]({{< meta site-url >}}/dev/docs/using-turing/getting-started/), but you will need to install the packages `Turing` and `StatsPlots` if you have not done so already. -This is an excerpt from a more formal example which can be found in [this Jupyter notebook](https://nbviewer.jupyter.org/github/TuringLang/TuringTutorials/blob/master/notebook/00-introduction/00_introduction.ipynb) or as part of the documentation website [here](%7B%7Bsite.baseurl%7D%7D/tutorials). +This is an excerpt from a more formal example which can be found in the documentation website [here]({{< meta site-url >}}/dev/docs/tutorials/introduction/). -```julia +## Import Libraries +```{julia} # Import libraries. using Turing, StatsPlots, Random ``` -```julia +```{julia} # Set the true probability of heads in a coin. p_true = 0.5 @@ -27,13 +24,15 @@ p_true = 0.5 Ns = 0:100 ``` -```julia +```{julia} # Draw data from a Bernoulli distribution, i.e. draw heads or tails. Random.seed!(12) data = rand(Bernoulli(p_true), last(Ns)) ``` -```julia + +## Declare Turing Model +```{julia} # Declare our Turing model. @model function coinflip(y) # Our prior belief about the probability of heads in a coin. @@ -48,17 +47,21 @@ data = rand(Bernoulli(p_true), last(Ns)) end ``` -```julia + +## Setting HMC Sampler +```{julia} # Settings of the Hamiltonian Monte Carlo (HMC) sampler. iterations = 1000 ϵ = 0.05 τ = 10 # Start sampling. -chain = sample(coinflip(data), HMC(ϵ, τ), iterations) +chain = sample(coinflip(data), HMC(ϵ, τ), iterations, progress=false) ``` -```julia + +## Plot a summary +```{julia} # Plot a summary of the sampling process for the parameter p, i.e. the probability of heads in a coin. histogram(chain[:p]) -``` +``` \ No newline at end of file diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml new file mode 100644 index 000000000..2e1e459f1 --- /dev/null +++ b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml @@ -0,0 +1,2202 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" + +[[deps.ADTypes]] +git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.1.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+1" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.4" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.1+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.16.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.36.1" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.2" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.19.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.6+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/docs-15-using-turing-sampler-viz/Project.toml b/tutorials/docs-15-using-turing-sampler-viz/Project.toml new file mode 100644 index 000000000..f430df979 --- /dev/null +++ b/tutorials/docs-15-using-turing-sampler-viz/Project.toml @@ -0,0 +1,6 @@ +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-15-using-turing-sampler-viz/index.qmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd index f79711006..beab64967 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/index.qmd +++ b/tutorials/docs-15-using-turing-sampler-viz/index.qmd @@ -1,23 +1,17 @@ --- title: Sampler Visualization -mathjax: true -permalink: /docs/using-turing/sampler-viz -redirect_from: docs/sampler-viz/ -weave_options: - error : false +engine: julia --- -# Sampler Visualization - ## Introduction -## The Code +### The Code For each sampler, we will use the same code to plot sampler paths. The block below loads the relevant libraries and defines a function for plotting the sampler's trajectory across the posterior. The Turing model definition used here is not especially practical, but it is designed in such a way as to produce visually interesting posterior surfaces to show how different samplers move along the distribution. -```julia +```{julia} ENV["GKS_ENCODING"] = "utf-8" # Allows the use of unicode characters in Plots.jl using Plots using StatsPlots @@ -102,13 +96,17 @@ function plot_sampler(chain; label="") end; ``` +```{julia} +setprogress!(false) +``` + ## Samplers ### Gibbs Gibbs sampling tends to exhibit a "jittery" trajectory. The example below combines `HMC` and `PG` sampling to traverse the posterior. -```julia +```{julia} c = sample(model, Gibbs(HMC(0.01, 5, :s²), PG(20, :m)), 1000) plot_sampler(c) ``` @@ -117,7 +115,7 @@ plot_sampler(c) Hamiltonian Monte Carlo (HMC) sampling is a typical sampler to use, as it tends to be fairly good at converging in a efficient manner. It can often be tricky to set the correct parameters for this sampler however, and the `NUTS` sampler is often easier to run if you don't want to spend too much time fiddling with step size and and the number of steps to take. Note however that `HMC` does not explore the positive values μ very well, likely due to the leapfrog and step size parameter settings. -```julia +```{julia} c = sample(model, HMC(0.01, 10), 1000) plot_sampler(c) ``` @@ -126,7 +124,7 @@ plot_sampler(c) The HMCDA sampler is an implementation of the Hamiltonian Monte Carlo with Dual Averaging algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. -```julia +```{julia} c = sample(model, HMCDA(200, 0.65, 0.3), 1000) plot_sampler(c) ``` @@ -137,7 +135,7 @@ Metropolis-Hastings (MH) sampling is one of the earliest Markov Chain Monte Carl The plot below only uses 1,000 iterations of Metropolis-Hastings. -```julia +```{julia} c = sample(model, MH(), 1000) plot_sampler(c) ``` @@ -150,7 +148,7 @@ The No U-Turn Sampler (NUTS) is an implementation of the algorithm found in the NUTS tends to be very good at traversing complex posteriors quickly. -```julia +```{julia} c = sample(model, NUTS(0.65), 1000) plot_sampler(c) ``` @@ -159,14 +157,14 @@ The only parameter that needs to be set other than the number of iterations to r Here is a plot showing a very high acceptance rate. Note that it appears to "stick" to a mode and is not particularly good at exploring the posterior as compared to the 0.65 target acceptance ratio case. -```julia +```{julia} c = sample(model, NUTS(0.95), 1000) plot_sampler(c) ``` An exceptionally low acceptance rate will show very few moves on the posterior: -```julia +```{julia} c = sample(model, NUTS(0.2), 1000) plot_sampler(c) ``` @@ -177,14 +175,14 @@ The Particle Gibbs (PG) sampler is an implementation of an algorithm from the pa The two parameters are the number of particles, and the number of iterations. The plot below shows the use of 20 particles. -```julia +```{julia} c = sample(model, PG(20), 1000) plot_sampler(c) ``` Next, we plot using 50 particles. -```julia +```{julia} c = sample(model, PG(50), 1000) plot_sampler(c) -``` +``` \ No newline at end of file diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml new file mode 100644 index 000000000..e3403f9f3 --- /dev/null +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -0,0 +1,1587 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.0" +manifest_format = "2.0" +project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "3.7.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["Random"] +git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.2" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.7.1" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.11" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.0.5+1" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.25.4" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.ExternalDocstrings]] +git-tree-sha1 = "1224740fc4d07c989949e1c1b508ebd49a65a5f6" +uuid = "e189563c-0753-4f5e-ad5c-be4293c83fb4" +version = "0.1.1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.23.1" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.Folds]] +deps = ["Accessors", "BangBang", "Baselet", "DefineSingletons", "Distributed", "ExternalDocstrings", "InitialValues", "MicroCollections", "Referenceables", "Requires", "Test", "ThreadedScans", "Transducers"] +git-tree-sha1 = "7eb4bc88d8295e387a667fd43d67c157ddee76cf" +uuid = "41a02a25-b8f0-4f67-bc48-60067656b558" +version = "0.2.10" + + [deps.Folds.extensions] + FoldsOnlineStatsBaseExt = "OnlineStatsBase" + + [deps.Folds.weakdeps] + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.5" + +[[deps.HDF5]] +deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] +git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c" +uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" +version = "0.17.2" + + [deps.HDF5.extensions] + MPIExt = "MPI" + + [deps.HDF5.weakdeps] + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + +[[deps.HDF5_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997" +uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" +version = "1.14.3+3" + +[[deps.Hwloc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" +version = "2.10.0+0" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.1.1" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.2.0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MPICH_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7" +uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" +version = "4.2.1+1" + +[[deps.MPIPreferences]] +deps = ["Libdl", "Preferences"] +git-tree-sha1 = "c105fe467859e7f6e9a852cb15cb4301126fac07" +uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" +version = "0.1.11" + +[[deps.MPItrampoline_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "ce0ca3dd147c43de175c5aff161315a424f4b8ac" +uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" +version = "5.3.3+1" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.MicroCanonicalHMC]] +deps = ["AbstractMCMC", "Adapt", "Distributions", "ForwardDiff", "HDF5", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "MCMCDiagnosticTools", "Markdown", "ProgressMeter", "Random", "Statistics"] +git-tree-sha1 = "36c2a6c87b7fbb68b3be89d2ea07051aeb4f3690" +uuid = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" +version = "0.1.3" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.MicrosoftMPI_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" +uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" +version = "10.1.4+2" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.8.3" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.16" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.1" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+2" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenMPI_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" +uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" +version = "4.1.6+0" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Optimization]] +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" +uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" +version = "3.19.3" + + [deps.Optimization.extensions] + OptimizationEnzymeExt = "Enzyme" + OptimizationFiniteDiffExt = "FiniteDiff" + OptimizationForwardDiffExt = "ForwardDiff" + OptimizationMTKExt = "ModelingToolkit" + OptimizationReverseDiffExt = "ReverseDiff" + OptimizationSparseDiffExt = ["SparseDiffTools", "Symbolics", "ReverseDiff"] + OptimizationTrackerExt = "Tracker" + OptimizationZygoteExt = "Zygote" + + [deps.Optimization.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.OptimizationOptimJL]] +deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] +git-tree-sha1 = "bea24fb320d58cb639e3cbc63f8eedde6c667bd3" +uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" +version = "0.1.14" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PSIS]] +deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] +git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" +uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" +version = "0.7.2" + +[[deps.Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.3" + +[[deps.Pathfinder]] +deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] +git-tree-sha1 = "9276ab48cb3a900e0bca214912c756d52625dadb" +uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" +version = "0.7.0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + + [deps.Ratios.weakdeps] + FixedPointNumbers = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "2.38.10" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.Referenceables]] +deps = ["Adapt"] +git-tree-sha1 = "02d31ad62838181c1a3a5fd23a1ce5914a643601" +uuid = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" +version = "0.1.3" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.0+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "1.98.1" + + [deps.SciMLBase.extensions] + ZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.33.21" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["DocStringExtensions"] +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.2.2" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.ThreadedScans]] +deps = ["ArgCheck"] +git-tree-sha1 = "ca1ba3000289eacba571aaa4efcefb642e7a1de6" +uuid = "24d252fe-5d94-4a69-83ea-56a14333d47a" +version = "0.1.0" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.31.4" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.1.2+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/tutorials/docs-16-using-turing-external-samplers/Project.toml b/tutorials/docs-16-using-turing-external-samplers/Project.toml new file mode 100644 index 000000000..292767c3c --- /dev/null +++ b/tutorials/docs-16-using-turing-external-samplers/Project.toml @@ -0,0 +1,8 @@ +[deps] +AdvancedHMC = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +AdvancedMH = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +MicroCanonicalHMC = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" +Pathfinder = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd index e6b9a2b13..1a1d9b5cd 100644 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -1,12 +1,10 @@ --- title: Using External Sampler -permalink: /docs/using-turing/external-samplers -mathjax: true -weave_options: - error : false +# title: Using External Samplers on Turing Models +engine: julia --- -# Using External Samplers on Turing Models +## Using External Samplers on Turing Models `Turing` provides several wrapped samplers from external sampling libraries, e.g., HMC samplers from `AdvancedHMC`. These wrappers allow new users to seamlessly sample statistical models without leaving `Turing` @@ -16,7 +14,7 @@ Moreover, users might want to use samplers currently not wrapped within `Turing` For these reasons, `Turing` also makes running external samplers on Turing models easy without any necessary modifications or wrapping! Throughout, we will use a 10-dimensional Neal's funnel as a running example:: -```julia +```{julia} # Import libraries. using Turing, Random, LinearAlgebra @@ -30,7 +28,7 @@ end Now we sample the model to generate some observations, which we can then condition on. -```julia +```{julia} (; x) = rand(funnel() | (θ=0,)) model = funnel() | (; x); ``` @@ -44,15 +42,19 @@ An excellent point to start to show how this is done in practice is by looking a Let's say we want to use a random walk Metropolis-Hastings sampler without specifying the proposal distributions. The code below constructs an MH sampler using a multivariate Gaussian distribution with zero mean and unit variance in `d` dimensions as a random walk proposal. -```julia +```{julia} # Importing the sampling library using AdvancedMH rwmh = AdvancedMH.RWMH(d) ``` +```{julia} +setprogress!(false) +``` + Sampling is then as easy as: -```julia +```{julia} chain = sample(model, externalsampler(rwmh), 10_000) ``` @@ -69,7 +71,7 @@ In this process, `Pathfinder` computes an estimate of the mass matrix the user c The code below shows this can be done in practice. -```julia +```{julia} using AdvancedHMC, Pathfinder # Running pathfinder draws = 1_000 @@ -93,12 +95,12 @@ chain = sample(model, externalsampler(nuts), 10_000; n_adapts=1_000) So far we have used Turing's support for external samplers to go beyond the capabilities of the wrappers. We want to use this support to employ a sampler not supported within Turing's ecosystem yet. We will use the recently developed Micro-Cannoncial Hamiltonian Monte Carlo (MCHMC) sampler to showcase this. -MCHMC[^3,^4] ((MCHMC's GitHub)[https://github.com/JaimeRZP/MicroCanonicalHMC.jl]) is HMC sampler that uses one single Hamiltonian energy level to explore the whole parameter space. +MCHMC[[^3],[^4]] ((MCHMC's GitHub)[https://github.com/JaimeRZP/MicroCanonicalHMC.jl]) is HMC sampler that uses one single Hamiltonian energy level to explore the whole parameter space. This is achieved by simulating the dynamics of a microcanonical Hamiltonian with an additional noise term to ensure ergodicity. Using this as well as other inference methods outside the Turing ecosystem is as simple as executing the code shown below: -```julia +```{julia} using MicroCanonicalHMC # Create MCHMC sampler n_adapts = 1_000 # adaptation steps @@ -116,7 +118,8 @@ In this section, we will briefly dwell on what this entails. First and foremost, the sampler should be a subtype of `AbstractMCMC.AbstractSampler`. Second, the stepping function of the MCMC algorithm must be made defined using `AbstractMCMC.step` and follow the structure below: -``` +```{julia} +#| eval: false # First step function AbstractMCMC.step{T<:AbstractMCMC.AbstractSampler}( rng::Random.AbstractRNG, @@ -161,9 +164,8 @@ For practical examples of how to adapt a sampling library to the `AbstractMCMC` - [AdvancedHMC](https://github.com/TuringLang/AdvancedHMC.jl/blob/762e55f894d142495a41a6eba0eed9201da0a600/src/abstractmcmc.jl#L102-L170) - [MicroCanonicalHMC](https://github.com/JaimeRZP/MicroCanonicalHMC.jl/blob/master/src/abstractmcmc.jl) -# Refences [^1]: Xu et al., [AdvancedHMC.jl: A robust, modular and efficient implementation of advanced HMC algorithms](http://proceedings.mlr.press/v118/xu20a/xu20a.pdf), 2019 [^2]: Zhang et al., [Pathfinder: Parallel quasi-Newton variational inference](https://arxiv.org/abs/2108.03782), 2021 [^3]: Robnik et al, [Microcanonical Hamiltonian Monte Carlo](https://arxiv.org/abs/2212.08549), 2022 -[^4]: Robnik and Seljak, [Langevine Hamiltonian Monte Carlo](https://arxiv.org/abs/2303.18221), 2023 +[^4]: Robnik and Seljak, [Langevine Hamiltonian Monte Carlo](https://arxiv.org/abs/2303.18221), 2023 \ No newline at end of file From 1c88b69b8a70cb5e6256d55842169fd76da41051 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Sun, 19 May 2024 18:53:59 +0530 Subject: [PATCH 06/25] fixed docs --- tutorials/00-introduction/index.qmd | 1 - tutorials/01-gaussian-mixture-model/index.qmd | 2 -- tutorials/02-logistic-regression/index.qmd | 1 - tutorials/03-bayesian-neural-network/index.qmd | 2 +- tutorials/04-hidden-markov-model/index.qmd | 2 -- tutorials/05-linear-regression/index.qmd | 6 ------ tutorials/06-infinite-mixture-model/index.qmd | 1 - tutorials/07-poisson-regression/index.qmd | 5 ++--- tutorials/08-multinomial-logistic-regression/index.qmd | 1 - tutorials/09-variational-inference/index.qmd | 4 ++-- tutorials/10-bayesian-differential-equations/index.qmd | 10 +--------- tutorials/11-probabilistic-pca/index.qmd | 2 -- tutorials/13-seasonal-time-series/index.qmd | 1 + tutorials/15-gaussian-processes/index.qmd | 1 + .../index.qmd | 6 ++---- tutorials/docs-06-for-developers-interface/index.qmd | 2 +- tutorials/docs-12-using-turing-guide/index.qmd | 6 +++--- tutorials/docs-15-using-turing-sampler-viz/index.qmd | 1 + .../docs-16-using-turing-external-samplers/index.qmd | 6 ++++-- 19 files changed, 19 insertions(+), 41 deletions(-) diff --git a/tutorials/00-introduction/index.qmd b/tutorials/00-introduction/index.qmd index e27284f5b..9b9b6d1ae 100644 --- a/tutorials/00-introduction/index.qmd +++ b/tutorials/00-introduction/index.qmd @@ -196,7 +196,6 @@ Now we can build our plot: diff --git a/tutorials/01-gaussian-mixture-model/index.qmd b/tutorials/01-gaussian-mixture-model/index.qmd index db06d7b07..a8268d40e 100644 --- a/tutorials/01-gaussian-mixture-model/index.qmd +++ b/tutorials/01-gaussian-mixture-model/index.qmd @@ -107,13 +107,11 @@ We use a `Gibbs` sampler that combines a [particle Gibbs](https://www.stats.ox.a We generate multiple chains in parallel using multi-threading. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` ```{julia} -#| output: false sampler = Gibbs(PG(100, :k), HMC(0.05, 10, :μ, :w)) nsamples = 100 nchains = 3 diff --git a/tutorials/02-logistic-regression/index.qmd b/tutorials/02-logistic-regression/index.qmd index 45737b5fb..0c1e8d4de 100644 --- a/tutorials/02-logistic-regression/index.qmd +++ b/tutorials/02-logistic-regression/index.qmd @@ -121,7 +121,6 @@ end; Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` diff --git a/tutorials/03-bayesian-neural-network/index.qmd b/tutorials/03-bayesian-neural-network/index.qmd index 2bd91602c..e8a1c8216 100644 --- a/tutorials/03-bayesian-neural-network/index.qmd +++ b/tutorials/03-bayesian-neural-network/index.qmd @@ -107,7 +107,6 @@ end; Inference can now be performed by calling `sample`. We use the `NUTS` Hamiltonian Monte Carlo sampler here. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` @@ -183,6 +182,7 @@ contour!(x1_range, x2_range, Z) Suppose we are interested in how the predictive power of our Bayesian neural network evolved between samples. In that case, the following graph displays an animation of the contour plot generated from the network weights in samples 1 to 1,000. + ```{julia} # Number of iterations to plot. n_end = 500 diff --git a/tutorials/04-hidden-markov-model/index.qmd b/tutorials/04-hidden-markov-model/index.qmd index 935523eef..f8174ba51 100644 --- a/tutorials/04-hidden-markov-model/index.qmd +++ b/tutorials/04-hidden-markov-model/index.qmd @@ -123,7 +123,6 @@ The parameter `s` is not a continuous variable. It is a vector of **integers**, Time to run our sampler. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` @@ -140,7 +139,6 @@ It's a bit easier to show how our model performed graphically. The code below generates an animation showing the graph of the data above, and the data our model generates in each sample. ```{julia} - # Extract our m and s parameters from the chain. m_set = MCMCChains.group(chn, :m).value s_set = MCMCChains.group(chn, :s).value diff --git a/tutorials/05-linear-regression/index.qmd b/tutorials/05-linear-regression/index.qmd index 4c525ac88..7bd3faff4 100644 --- a/tutorials/05-linear-regression/index.qmd +++ b/tutorials/05-linear-regression/index.qmd @@ -11,7 +11,6 @@ This tutorial covers how to implement a linear regression model in Turing. We begin by importing all the necessary libraries. ```{julia} -#| eval: false # Import Turing. using Turing @@ -39,8 +38,6 @@ Random.seed!(0); ``` ```{julia} -#| eval: false -#| echo: false #| output: false setprogress!(false) ``` @@ -52,7 +49,6 @@ We want to know if we can construct a Bayesian linear regression model to predic Let us take a look at the data we have. ```{julia} -#| eval: false # Load the dataset. data = RDatasets.dataset("datasets", "mtcars") @@ -61,7 +57,6 @@ first(data, 6) ``` ```{julia} -#| eval: false size(data) ``` @@ -118,7 +113,6 @@ We do not know that our coefficients are different from zero, and we don't know Lastly, each observation $y_i$ is distributed according to the calculated `mu` term given by $\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}$. ```{julia} -#| eval: false # Bayesian linear regression. @model function linear_regression(x, y) # Set variance prior. diff --git a/tutorials/06-infinite-mixture-model/index.qmd b/tutorials/06-infinite-mixture-model/index.qmd index 682da632e..7491e1f14 100644 --- a/tutorials/06-infinite-mixture-model/index.qmd +++ b/tutorials/06-infinite-mixture-model/index.qmd @@ -222,7 +222,6 @@ data /= std(data); Next, we'll sample from our posterior using SMC. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` diff --git a/tutorials/07-poisson-regression/index.qmd b/tutorials/07-poisson-regression/index.qmd index a3b5c91be..589c032c2 100644 --- a/tutorials/07-poisson-regression/index.qmd +++ b/tutorials/07-poisson-regression/index.qmd @@ -69,7 +69,7 @@ df[sample(1:nrow(df), 5; replace=false), :] We plot the distribution of the number of sneezes for the 4 different cases taken above. As expected, the person sneezes the most when he has taken alcohol and not taken his medicine. He sneezes the least when he doesn't consume alcohol and takes his medicine. ```{julia} -#Data Plotting +# Data Plotting p1 = Plots.histogram( df[(df[:, :alcohol_taken] .== 0) .& (df[:, :nomeds_taken] .== 0), 1]; @@ -102,7 +102,7 @@ data We must recenter our data about 0 to help the Turing sampler in initialising the parameter estimates. So, normalising the data in each column by subtracting the mean and dividing by the standard deviation: ```{julia} -# # Rescale our matrices. +# Rescale our matrices. data = (data .- mean(data; dims=1)) ./ std(data; dims=1) ``` @@ -213,4 +213,3 @@ plot(chains_new) ``` As can be seen from the numeric values and the plots above, the standard deviation values have decreased and all the plotted values are from the estimated posteriors. The exponentiated mean values, with the warmup samples removed, have not changed by much and they are still in accordance with their intuitive meanings as described earlier. - diff --git a/tutorials/08-multinomial-logistic-regression/index.qmd b/tutorials/08-multinomial-logistic-regression/index.qmd index ece4f265c..a979474f9 100644 --- a/tutorials/08-multinomial-logistic-regression/index.qmd +++ b/tutorials/08-multinomial-logistic-regression/index.qmd @@ -119,7 +119,6 @@ end; Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` diff --git a/tutorials/09-variational-inference/index.qmd b/tutorials/09-variational-inference/index.qmd index 6415069cc..bb3721c86 100644 --- a/tutorials/09-variational-inference/index.qmd +++ b/tutorials/09-variational-inference/index.qmd @@ -73,7 +73,6 @@ We'll produce 10 000 samples with 200 steps used for adaptation and a target acc If you don't understand what "adaptation" or "target acceptance rate" refers to, all you really need to know is that `NUTS` is known to be one of the most accurate and efficient samplers (when applicable) while requiring little to no hand-tuning to work well. ```{julia} -#| echo: false #| output: false setprogress!(false) ``` @@ -601,6 +600,7 @@ Test set: OLS loss: $ols_loss2") ``` + Interestingly the squared difference between true- and mean-prediction on the test-set is actually *better* for the mean-field variational posterior than for the "true" posterior obtained by MCMC sampling using `NUTS`. But, as Bayesians, we know that the mean doesn't tell the entire story. One quick check is to look at the mean predictions ± standard deviation of the two different approaches: ```{julia} @@ -797,8 +797,8 @@ Test set: ``` ```{julia} -#| echo: false #| eval: false +#| echo: false # Verify the loss on the test set. @assert vi_loss2 < 0.01 "VI loss on the test set: $(vi_loss2)" @assert bayes_loss2 < 0.000001 "Bayes loss on the test set: $(bayes_loss2)" diff --git a/tutorials/10-bayesian-differential-equations/index.qmd b/tutorials/10-bayesian-differential-equations/index.qmd index ac78970b7..169a65bfb 100644 --- a/tutorials/10-bayesian-differential-equations/index.qmd +++ b/tutorials/10-bayesian-differential-equations/index.qmd @@ -9,7 +9,6 @@ The popular “forward-problem” of simulation consists of solving the differen Bayesian inference provides a robust approach to parameter estimation with quantified uncertainty. ```{julia} -#| eval: false using Turing using DifferentialEquations @@ -41,7 +40,6 @@ where $x(t)$ and $y(t)$ denote the populations of prey and predator at time $t$, We implement the Lotka-Volterra model and simulate it with parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. ```{julia} -#| eval: false # Define Lotka-Volterra model. function lotka_volterra(du, u, p, t) # Model parameters. @@ -71,7 +69,6 @@ With the [`saveat` argument](https://docs.sciml.ai/latest/basics/common_solver_o To make the example more realistic we add random normally distributed noise to the simulation. ```{julia} -#| eval: false sol = solve(prob, Tsit5(); saveat=0.1) odedata = Array(sol) + 0.8 * randn(size(Array(sol))) @@ -89,8 +86,8 @@ Previously, functions in Turing and DifferentialEquations were not inter-composa Nowadays, however, Turing and DifferentialEquations are completely composable and we can just simulate differential equations inside a Turing `@model`. Therefore, we write the Lotka-Volterra parameter estimation problem using the Turing `@model` macro as below: + ```{julia} -#| eval: false @model function fitlv(data, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -121,7 +118,6 @@ The estimated parameters are close to the parameter values the observations were We can also check visually that the chains have converged. ```{julia} -#| eval: false plot(chain) ``` @@ -133,7 +129,6 @@ We plot the ensemble of solutions to check if the solution resembles the data. The 300 retrodicted time courses from the posterior are plotted in gray, the noisy observations are shown as blue and red dots, and the green and purple lines are the ODE solution that was used to generate the data. ```{julia} -#| eval: false plot(; legend=false) posterior_samples = sample(chain[[:α, :β, :γ, :δ]], 300; replace=false) for p in eachrow(Array(posterior_samples)) @@ -155,7 +150,6 @@ For instance, let us suppose we have only observations of the predators but not I.e., we fit the model only to the $y$ variable of the system without providing any data for $x$: ```{julia} -#| eval: false @model function fitlv2(data::AbstractVector, prob) # Prior distributions. σ ~ InverseGamma(2, 3) @@ -183,7 +177,6 @@ chain2 = sample(model2, NUTS(0.45), MCMCSerial(), 5000, 3; progress=false) Again we inspect the trajectories of 300 randomly selected posterior samples. ```{julia} -#| eval: false plot(; legend=false) posterior_samples = sample(chain2[[:α, :β, :γ, :δ]], 300; replace=false) for p in eachrow(Array(posterior_samples)) @@ -222,7 +215,6 @@ Again we use parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = Moreover, we assume $x(t) = 1$ for $t < 0$. ```{julia} -#| eval: false function delay_lotka_volterra(du, u, h, p, t) # Model parameters. α, β, γ, δ = p diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd index f7a849404..f8edd050e 100644 --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -80,7 +80,6 @@ We use PCA to explore underlying structure or pattern which may not necessarily First, we load the dependencies used. ```{julia} - using Turing using ReverseDiff Turing.setadbackend(:reversediff) @@ -189,7 +188,6 @@ We run the inference using the NUTS sampler, of which the chain length is set to You are free to try [different samplers](https://turinglang.org/stable/docs/library/#samplers). ```{julia} -#| echo: false #| output: false setprogress!(false) ``` diff --git a/tutorials/13-seasonal-time-series/index.qmd b/tutorials/13-seasonal-time-series/index.qmd index e3ad1cf62..77eeb1b8e 100644 --- a/tutorials/13-seasonal-time-series/index.qmd +++ b/tutorials/13-seasonal-time-series/index.qmd @@ -243,6 +243,7 @@ Since our model takes cyclic effects into account separately, we get a better estimate of the true overall trend than if we would have just fitted a line. But what frequency content did the model identify? + ```{julia} function plot_cyclic_features(βsin, βcos) labels = reshape(["freq = $i" for i in freqs], 1, :) diff --git a/tutorials/15-gaussian-processes/index.qmd b/tutorials/15-gaussian-processes/index.qmd index 32c2e04b0..abf8689b6 100644 --- a/tutorials/15-gaussian-processes/index.qmd +++ b/tutorials/15-gaussian-processes/index.qmd @@ -133,6 +133,7 @@ We'll make use of [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl), better performance than [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl/) on this example. See Turing.jl's docs on Automatic Differentiation for more info. + ```{julia} using Random, ReverseDiff diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd index d0ef838a0..c98f35aec 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd @@ -12,8 +12,6 @@ Consider the following Turing, code block: ```{julia} using Turing -setprogress!(false) - @model function gdemo(x, y) s² ~ InverseGamma(2, 3) m ~ Normal(0, sqrt(s²)) @@ -25,7 +23,7 @@ mod = gdemo(1.5, 2) alg = IS() n_samples = 1000 -chn = sample(mod, alg, n_samples) +chn = sample(mod, alg, n_samples, progress=false) ``` The function `sample` is part of the AbstractMCMC interface. As explained in the [interface guide](https://turinglang.org/dev/docs/for-developers/interface), building a a sampling method that can be used by `sample` consists in overloading the structs and functions in `AbstractMCMC`. The interface guide also gives a standalone example of their implementation, [`AdvancedMH.jl`](). @@ -64,7 +62,7 @@ is a good approximation of the posterior. Recall the last line of the above code block: ```{julia} -chn = sample(mod, alg, n_samples) +chn = sample(mod, alg, n_samples, progress=false) ``` Here `sample` takes as arguments a **model** `mod`, an **algorithm** `alg`, and a **number of samples** `n_samples`, and returns an instance `chn` of `Chains` which can be analysed using the functions in `MCMCChains`. diff --git a/tutorials/docs-06-for-developers-interface/index.qmd b/tutorials/docs-06-for-developers-interface/index.qmd index b498a9934..c2196b1bf 100644 --- a/tutorials/docs-06-for-developers-interface/index.qmd +++ b/tutorials/docs-06-for-developers-interface/index.qmd @@ -162,6 +162,7 @@ The other `step!` function performs the usual steps from Metropolis-Hastings. In - `q` returns the log density of one parameterization conditional on another, according to the proposal distribution. - `step!` generates a new proposal, checks the acceptance probability, and then returns either the previous transition or the proposed transition. + ```{julia} #| eval: false # Define a function that makes a basic proposal depending on a univariate @@ -276,7 +277,6 @@ chain = sample(model, spl, 100000; param_names=["μ", "σ"]) If all the interface functions have been extended properly, you should get an output from `display(chain)` that looks something like this: - ```{.cell-bg} Object of type Chains, with data of type 100000×3×1 Array{Float64,3} diff --git a/tutorials/docs-12-using-turing-guide/index.qmd b/tutorials/docs-12-using-turing-guide/index.qmd index c28f87bd1..b75c7627c 100644 --- a/tutorials/docs-12-using-turing-guide/index.qmd +++ b/tutorials/docs-12-using-turing-guide/index.qmd @@ -37,6 +37,7 @@ end Note: As a sanity check, the prior expectation of `s²` is `mean(InverseGamma(2, 3)) = 3/(2 - 1) = 3` and the prior expectation of `m` is 0. This can be easily checked using `Prior`: ```{julia} +#| output: false setprogress!(false) ``` @@ -497,8 +498,8 @@ using StatsBase coeftable(mle_estimate) ``` - -``` + +```{.cell-bg} ───────────────────────────── estimate stderror tstat ───────────────────────────── @@ -507,7 +508,6 @@ m 1.75 0.176777 9.8995 ───────────────────────────── ``` - Standard errors are calculated from the Fisher information matrix (inverse Hessian of the log likelihood or log joint). t-statistics will be familiar to frequentist statisticians. Warning -- standard errors calculated in this way may not always be appropriate for MAP estimates, so please be cautious in interpreting them. #### Sampling with the MAP/MLE as initial states diff --git a/tutorials/docs-15-using-turing-sampler-viz/index.qmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd index beab64967..732bfe1d5 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/index.qmd +++ b/tutorials/docs-15-using-turing-sampler-viz/index.qmd @@ -97,6 +97,7 @@ end; ``` ```{julia} +#| output: false setprogress!(false) ``` diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd index 1a1d9b5cd..6b209e9eb 100644 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -38,7 +38,7 @@ Before discussing how this is done in practice, giving a high-level description Imagine that we created an instance of an external sampler that we will call `spl` such that `typeof(spl)<:AbstractMCMC.AbstractSampler`. In order to avoid type ambiguity within Turing, at the moment it is necessary to declare `spl` as an external sampler to Turing `espl = externalsampler(spl)`, where `externalsampler(s::AbstractMCMC.AbstractSampler)` is a Turing function that types our external sampler adequately. -An excellent point to start to show how this is done in practice is by looking at the sampling library `AdvancedMH` ((`AdvancedMH`'s GitHub)[[https://github.com/TuringLang/AdvancedMH.jl]) for Metropolis-Hastings (MH) methods. +An excellent point to start to show how this is done in practice is by looking at the sampling library `AdvancedMH` ([`AdvancedMH`'s GitHub](https://github.com/TuringLang/AdvancedMH.jl)) for Metropolis-Hastings (MH) methods. Let's say we want to use a random walk Metropolis-Hastings sampler without specifying the proposal distributions. The code below constructs an MH sampler using a multivariate Gaussian distribution with zero mean and unit variance in `d` dimensions as a random walk proposal. @@ -49,11 +49,13 @@ rwmh = AdvancedMH.RWMH(d) ``` ```{julia} +#| output: false setprogress!(false) ``` Sampling is then as easy as: + ```{julia} chain = sample(model, externalsampler(rwmh), 10_000) ``` @@ -61,7 +63,7 @@ chain = sample(model, externalsampler(rwmh), 10_000) ## Going beyond the Turing API As previously mentioned, the Turing wrappers can often limit the capabilities of the sampling libraries they wrap. -`AdvancedHMC`[^1] ((`AdvancedHMC`'s GitHub)[https://github.com/TuringLang/AdvancedHMC.jl]) is a clear example of this. A common practice when performing HMC is to provide an initial guess for the mass matrix. +`AdvancedHMC`[^1] ([`AdvancedHMC`'s GitHub](https://github.com/TuringLang/AdvancedHMC.jl)) is a clear example of this. A common practice when performing HMC is to provide an initial guess for the mass matrix. However, the native HMC sampler within Turing only allows the user to specify the type of the mass matrix despite the two options being possible within `AdvancedHMC`. Thankfully, we can use Turing's support for external samplers to define an HMC sampler with a custom mass matrix in `AdvancedHMC` and then use it to sample our Turing model. From c998e960ccf4b975e532dbd42b8598f613a7942a Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Mon, 20 May 2024 17:34:13 +0530 Subject: [PATCH 07/25] updated Turing version and fixed link in 07 --- tutorials/00-introduction/Manifest.toml | 111 +++++------ tutorials/00-introduction/index.qmd | 2 +- .../01-gaussian-mixture-model/Manifest.toml | 67 ++++--- .../02-logistic-regression/Manifest.toml | 67 ++++--- .../03-bayesian-neural-network/Manifest.toml | 55 +++--- .../04-hidden-markov-model/Manifest.toml | 67 ++++--- tutorials/05-linear-regression/Manifest.toml | 173 ++++++++++------- .../06-infinite-mixture-model/Manifest.toml | 48 ++--- tutorials/07-poisson-regression/Manifest.toml | 48 ++--- tutorials/07-poisson-regression/index.qmd | 2 +- .../Manifest.toml | 48 ++--- .../09-variational-inference/Manifest.toml | 36 ++-- .../Manifest.toml | 66 +++---- tutorials/11-probabilistic-pca/Manifest.toml | 48 ++--- tutorials/12-gplvm/Manifest.toml | 48 ++--- .../13-seasonal-time-series/Manifest.toml | 48 ++--- tutorials/14-minituring/Manifest.toml | 30 +-- tutorials/15-gaussian-processes/Manifest.toml | 48 ++--- .../docs-00-getting-started/Manifest.toml | 111 +++++------ .../Manifest.toml | 45 +++-- .../Manifest.toml | 17 +- .../Manifest.toml | 49 ++--- .../Manifest.toml | 49 ++--- .../Manifest.toml | 49 ++--- .../docs-12-using-turing-guide/Manifest.toml | 87 +++++---- .../docs-12-using-turing-guide/index.qmd | 1 + .../Manifest.toml | 49 ++--- .../Manifest.toml | 87 +++++---- .../Manifest.toml | 79 ++++---- .../index.qmd | 1 + .../Manifest.toml | 176 ++++++++++++------ .../index.qmd | 2 +- 32 files changed, 997 insertions(+), 817 deletions(-) diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 76fedf71a..5e2a4ac55 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -350,9 +350,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.12.11" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -635,9 +635,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -725,9 +725,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.0+0" +version = "2.80.2+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -742,9 +742,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ab5b37dc4f98fc037527968852a6f9b2bdf9f32d" +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.7" +version = "1.10.8" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -856,9 +856,9 @@ version = "3.0.3+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.18" +version = "0.9.19" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -1011,9 +1011,9 @@ version = "1.17.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22" +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.0+0" +version = "2.40.1+0" [[deps.Libtask]] deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] @@ -1029,9 +1029,9 @@ version = "4.5.1+1" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda" +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.0+0" +version = "2.40.1+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1172,9 +1172,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "5055845dd316575ae2fc1f6dcb3545ff15fe547a" +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.14" +version = "0.9.16" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1304,9 +1304,9 @@ version = "1.3.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" +version = "0.43.4+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1563,9 +1568,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1580,9 +1585,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" +version = "1.4.2" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/00-introduction/index.qmd b/tutorials/00-introduction/index.qmd index 9b9b6d1ae..c81294f2c 100644 --- a/tutorials/00-introduction/index.qmd +++ b/tutorials/00-introduction/index.qmd @@ -181,7 +181,7 @@ sampler = NUTS(); We approximate the posterior distribution with 1000 samples: ```{julia} -chain = sample(model, sampler, 1_000; progress=false); +chain = sample(model, sampler, 2_000, progress=false); ``` The `sample` function and common keyword arguments are explained more extensively in the documentation of [AbstractMCMC.jl](https://turinglang.github.io/AbstractMCMC.jl/dev/api/). diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index e5730c68a..6017f6801 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 912e0460f..b0c9eae85 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "34150aebdacd33ecff9a0ef36c61f0d85b4f0cfd" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -284,9 +284,9 @@ version = "0.10.14" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -570,9 +570,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -704,9 +704,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1463,6 +1463,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1542,9 +1547,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1588,10 +1593,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1629,9 +1634,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1747,9 +1752,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1936,9 +1941,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1968,9 +1973,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2042,9 +2047,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2238,10 +2243,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index fc19a7d2a..cd6b05c77 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -125,10 +125,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -218,9 +218,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -256,9 +256,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -659,9 +659,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1405,6 +1405,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1472,9 +1477,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1524,10 +1529,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1559,9 +1564,9 @@ version = "0.7.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1682,9 +1687,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1875,9 +1880,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1932,9 +1937,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2144,10 +2149,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index fc609259f..75598ea94 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "98395e891759166da437a82de77230ae2de18e0f" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index ec5e17820..c8e651482 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -5,17 +5,9 @@ manifest_format = "2.0" project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.2.7" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -35,10 +27,10 @@ uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" version = "5.2.0" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] -git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield"] +git-tree-sha1 = "9774889eac07c2e342e547b5c5c8ae5a2ce5c80b" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.8.4" +version = "0.7.1" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -105,10 +97,10 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] -git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.6.0" +version = "0.5.4" weakdeps = ["Libtask"] [deps.AdvancedPS.extensions] @@ -133,10 +125,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -209,17 +201,16 @@ uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" [[deps.BangBang]] -deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] -git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.4.2" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" - BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -227,7 +218,6 @@ version = "0.4.2" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] @@ -240,9 +230,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -284,9 +274,9 @@ version = "0.10.14" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -441,6 +431,12 @@ weakdeps = ["IntervalSets", "StaticArrays"] ConstructionBaseIntervalSetsExt = "IntervalSets" ConstructionBaseStaticArraysExt = "StaticArrays" +[[deps.ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.3" + [[deps.Contour]] git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -569,10 +565,10 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "839b5a5257047c2fe47946e84a706e37d9cfee27" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.24.11" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -648,6 +644,18 @@ git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" +[[deps.FLoops]] +deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] +git-tree-sha1 = "ffb97765602e3cbe59a0589d237bf07f245a8576" +uuid = "cc61a311-1640-44b5-9fba-1b764f453329" +version = "0.2.1" + +[[deps.FLoopsBase]] +deps = ["ContextVariablesX"] +git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" +uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" +version = "0.1.1" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" @@ -704,9 +712,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -908,6 +916,12 @@ git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "3.0.3+0" +[[deps.JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" @@ -1168,11 +1182,16 @@ git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" version = "1.9.6" +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + [[deps.MLUtils]] -deps = ["ChainRulesCore", "DelimitedFiles", "Random", "ShowCases", "Statistics", "StatsBase"] -git-tree-sha1 = "c92a10a2492dffac0e152a19d5ffd99a5030349a" +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.2.1" +version = "0.4.4" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1206,10 +1225,10 @@ uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" [[deps.MicroCollections]] -deps = ["Accessors", "BangBang", "InitialValues"] -git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +deps = ["BangBang", "InitialValues", "Setfield"] +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.2.0" +version = "0.1.4" [[deps.Missings]] deps = ["DataAPI"] @@ -1260,6 +1279,12 @@ git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.2" +[[deps.NameResolution]] +deps = ["PrettyPrint"] +git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" +uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" +version = "0.1.5" + [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" @@ -1429,6 +1454,11 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.3" +[[deps.PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" @@ -1451,6 +1481,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1530,9 +1565,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1576,10 +1611,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1609,17 +1644,11 @@ version = "0.5.13" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SSMProblems]] -deps = ["AbstractMCMC"] -git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" -uuid = "26aad666-b158-4e64-9d35-0e672562fa48" -version = "0.1.1" - [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1702,6 +1731,12 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + [[deps.SimpleUnPack]] git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" @@ -1745,9 +1780,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1778,9 +1813,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.3" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -1919,10 +1954,10 @@ weakdeps = ["Random", "Test"] TestExt = ["Test", "Random"] [[deps.Transducers]] -deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] -git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.82" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1939,10 +1974,10 @@ version = "0.4.82" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" [[deps.Turing]] -deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "4170ff68a0aa2b26b3944ba7bd8789a46d34e6bc" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.30.9" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1972,9 +2007,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2046,9 +2081,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2242,10 +2277,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index c7c977873..204a088af 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -511,9 +511,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -633,9 +633,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1405,9 +1405,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1451,10 +1451,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1604,9 +1604,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1765,9 +1765,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1797,9 +1797,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1854,9 +1854,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2050,10 +2050,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 677d98df8..98751c2c8 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "bace396eb81d800d5a672524649d4d1c97fc2822" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -546,9 +546,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -668,9 +668,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1469,9 +1469,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1515,10 +1515,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1674,9 +1674,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1847,9 +1847,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1879,9 +1879,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1942,9 +1942,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2138,10 +2138,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/07-poisson-regression/index.qmd b/tutorials/07-poisson-regression/index.qmd index 589c032c2..6f45e3ca0 100644 --- a/tutorials/07-poisson-regression/index.qmd +++ b/tutorials/07-poisson-regression/index.qmd @@ -3,7 +3,7 @@ title: Bayesian Poisson Regression engine: julia --- -This notebook is ported from the [example notebook](https://docs.pymc.io/notebooks/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. +This notebook is ported from the [example notebook](https://www.pymc.io/projects/examples/en/latest/generalized_linear_models/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. [Poisson Regression](https://en.wikipedia.org/wiki/Poisson_regression) is a technique commonly used to model count data. Some of the applications include predicting the number of people defaulting on their loans or the number of cars running on a highway on a given day. diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index a9262930b..466faf322 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -570,9 +570,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -704,9 +704,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1547,9 +1547,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1593,10 +1593,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1752,9 +1752,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1941,9 +1941,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1973,9 +1973,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2047,9 +2047,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2243,10 +2243,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index 407efe814..c773c6610 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -230,9 +230,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -760,9 +760,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1642,9 +1642,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1688,10 +1688,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1874,9 +1874,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2106,9 +2106,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2180,9 +2180,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2388,10 +2388,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index dab87fb86..d90cd243d 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -258,9 +258,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" weakdeps = ["DistributionsAD", "ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker", "Zygote"] [deps.Bijectors.extensions] @@ -529,11 +529,12 @@ version = "0.4.0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +git-tree-sha1 = "50382fbd95a4b7120df58d87b6038479be14d767" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.2" +version = "6.151.0" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] @@ -546,6 +547,7 @@ version = "6.149.2" DiffEqBaseUnitfulExt = "Unitful" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -651,9 +653,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" weakdeps = ["ChainRulesCore", "EnzymeCore", "ForwardDiff", "MCMCChains", "ReverseDiff", "ZygoteRules"] [deps.DynamicPPL.extensions] @@ -683,9 +685,9 @@ version = "1.0.4" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] -git-tree-sha1 = "5051d46f8795cd1adb16016f6b7145d42e98297f" +git-tree-sha1 = "259fc20bdf3f48d16cdc673806877c631c883dd3" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.12.6" +version = "0.12.7" weakdeps = ["ChainRulesCore", "SpecialFunctions", "StaticArrays"] [deps.Enzyme.extensions] @@ -704,9 +706,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "117141562896ca38b1a13bc515dfd2728bd86e55" +git-tree-sha1 = "b28ef691d1cc6425ee63c59e3f62e81a3ec072d4" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.109+0" +version = "0.0.111+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -844,9 +846,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1696,9 +1698,9 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "4cf03bfe9c6159f66b57cda85f169cd0eff0818d" +git-tree-sha1 = "a6ef55f6ce8a64e2d3c804d1c56fdafdd1528f86" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.76.0" +version = "6.77.1" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1917,9 +1919,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1981,10 +1983,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -2228,9 +2230,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2404,9 +2406,9 @@ version = "0.5.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.24" [[deps.Tracker]] deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] @@ -2466,9 +2468,9 @@ version = "1.4.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -2503,9 +2505,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2578,9 +2580,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2786,10 +2788,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 2de087ee4..9db395250 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -546,9 +546,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -668,9 +668,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1469,9 +1469,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1521,10 +1521,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1680,9 +1680,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1853,9 +1853,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1885,9 +1885,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1948,9 +1948,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2144,10 +2144,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml index f31e718b3..61130dc57 100644 --- a/tutorials/12-gplvm/Manifest.toml +++ b/tutorials/12-gplvm/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -234,9 +234,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -558,9 +558,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -692,9 +692,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1500,9 +1500,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1552,10 +1552,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1711,9 +1711,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1888,9 +1888,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1920,9 +1920,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1988,9 +1988,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2184,10 +2184,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 2c2b4d46e..a826828c1 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "af7399a6cc98476b7337e599b66269c48c3d4bdc" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1451,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1497,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1656,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1829,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1861,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1924,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2120,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index cca6d99cc..075fbc090 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -449,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -1030,9 +1030,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1070,10 +1070,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1206,9 +1206,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1352,9 +1352,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml index 1ab8da828..32e7788c6 100644 --- a/tutorials/15-gaussian-processes/Manifest.toml +++ b/tutorials/15-gaussian-processes/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "ef210273efb7c65b99cfa1e5b99ba970b3e506aa" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -234,9 +234,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -546,9 +546,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -674,9 +674,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1464,9 +1464,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1516,10 +1516,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1675,9 +1675,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1836,9 +1836,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1868,9 +1868,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "352edac1ad17e018186881b051960bfca78a075a" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.1" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1936,9 +1936,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2132,10 +2132,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index ff94f2a18..e84d6b8e6 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -350,9 +350,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.12.11" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -635,9 +635,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -725,9 +725,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.0+0" +version = "2.80.2+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -742,9 +742,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ab5b37dc4f98fc037527968852a6f9b2bdf9f32d" +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.7" +version = "1.10.8" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -856,9 +856,9 @@ version = "3.0.3+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.18" +version = "0.9.19" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -1011,9 +1011,9 @@ version = "1.17.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22" +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.0+0" +version = "2.40.1+0" [[deps.Libtask]] deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] @@ -1029,9 +1029,9 @@ version = "4.5.1+1" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda" +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.0+0" +version = "2.40.1+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1172,9 +1172,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "5055845dd316575ae2fc1f6dcb3545ff15fe547a" +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.14" +version = "0.9.16" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1304,9 +1304,9 @@ version = "1.3.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" +version = "0.43.4+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1563,9 +1568,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1580,9 +1585,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" +version = "1.4.2" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml index 16d9381cb..52553c784 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "897cd59b84059b5de9a87d6c703f88590d9727a9" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -449,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -968,6 +968,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1025,9 +1030,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "47f8fedb92e196d21d8d1f5f92d5de42449d1078" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.18.1" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1065,10 +1070,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1106,9 +1111,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "64486bd2cd4edc0da368ec839f62b6a4e118927b" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.37.0" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1201,9 +1206,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1347,9 +1352,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml index 8a0fdf42d..910e40798 100644 --- a/tutorials/docs-06-for-developers-interface/Manifest.toml +++ b/tutorials/docs-06-for-developers-interface/Manifest.toml @@ -49,10 +49,10 @@ version = "4.0.4" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -431,6 +431,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -463,10 +468,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml index 612dda707..d3853977c 100644 --- a/tutorials/docs-09-using-turing-advanced/Manifest.toml +++ b/tutorials/docs-09-using-turing-advanced/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "6cec53e876df73db3fdafb1c5341b0c2d969754c" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -449,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -968,6 +968,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1025,9 +1030,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1065,10 +1070,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1106,9 +1111,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1136,9 +1141,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1201,9 +1206,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1347,9 +1352,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml index ca1ed0b2a..3dd7a5eb0 100644 --- a/tutorials/docs-10-using-turing-autodiff/Manifest.toml +++ b/tutorials/docs-10-using-turing-autodiff/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "39edf0758c46988d8261ac978152a0ad94f6de94" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -449,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -968,6 +968,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1025,9 +1030,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1071,10 +1076,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1112,9 +1117,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1142,9 +1147,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1207,9 +1212,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1353,9 +1358,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml index 9eedcf759..2a6e03f3e 100644 --- a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml +++ b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "d10da1c0add3754bf2dbedbc935c84cd5faf5b39" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -455,9 +455,9 @@ version = "3.4.7" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -986,6 +986,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1043,9 +1048,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1083,10 +1088,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1124,9 +1129,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1154,9 +1159,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1219,9 +1224,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1400,9 +1405,9 @@ version = "1.5.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml index cab738268..069758334 100644 --- a/tutorials/docs-12-using-turing-guide/Manifest.toml +++ b/tutorials/docs-12-using-turing-guide/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -350,9 +350,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.12.11" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -651,9 +651,9 @@ version = "2.23.1" [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -678,9 +678,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -741,9 +741,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.0+0" +version = "2.80.2+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1200,9 +1200,9 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e913a7eaf569d20da0791bb81e9d74c9b84cbf1c" +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.15" +version = "0.9.16" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1431,6 +1431,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1498,9 +1503,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1544,10 +1549,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1585,9 +1590,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1615,9 +1620,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1703,9 +1708,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1876,9 +1881,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1913,9 +1918,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1976,9 +1981,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2172,10 +2177,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/docs-12-using-turing-guide/index.qmd b/tutorials/docs-12-using-turing-guide/index.qmd index b75c7627c..b2b369dab 100644 --- a/tutorials/docs-12-using-turing-guide/index.qmd +++ b/tutorials/docs-12-using-turing-guide/index.qmd @@ -498,6 +498,7 @@ using StatsBase coeftable(mle_estimate) ``` + ```{.cell-bg} ───────────────────────────── diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml index 00ee2621e..3df92c96b 100644 --- a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml +++ b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -228,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -449,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -974,6 +974,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1031,9 +1036,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1071,10 +1076,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1112,9 +1117,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1142,9 +1147,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1207,9 +1212,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1353,9 +1358,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml index 4ad98fd2e..75598ea94 100644 --- a/tutorials/docs-14-using-turing-quick-start/Manifest.toml +++ b/tutorials/docs-14-using-turing-quick-start/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "98395e891759166da437a82de77230ae2de18e0f" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -350,9 +350,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.12.11" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -635,9 +635,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -725,9 +725,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff" +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.0+0" +version = "2.80.2+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1172,9 +1172,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e913a7eaf569d20da0791bb81e9d74c9b84cbf1c" +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.15" +version = "0.9.16" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1563,9 +1568,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml index 2e1e459f1..d0c891e56 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" [[deps.ADTypes]] -git-tree-sha1 = "401c87ea437e9d5b74dc283a77198ad75e50811f" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.1.0" +version = "1.2.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -133,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -240,9 +240,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -278,9 +278,9 @@ version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -350,9 +350,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.12.11" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -540,9 +540,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -635,9 +635,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] @@ -662,9 +662,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1379,6 +1379,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" @@ -1446,9 +1451,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1492,10 +1497,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1533,9 +1538,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1563,9 +1568,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1651,9 +1656,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1824,9 +1829,9 @@ version = "0.4.82" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1856,9 +1861,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.19.0" +version = "1.20.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1919,9 +1924,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2115,10 +2120,10 @@ uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/tutorials/docs-15-using-turing-sampler-viz/index.qmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd index 732bfe1d5..6475f17f6 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/index.qmd +++ b/tutorials/docs-15-using-turing-sampler-viz/index.qmd @@ -149,6 +149,7 @@ The No U-Turn Sampler (NUTS) is an implementation of the algorithm found in the NUTS tends to be very good at traversing complex posteriors quickly. + ```{julia} c = sample(model, NUTS(0.65), 1000) plot_sampler(c) diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml index e3403f9f3..55fe89a5b 100644 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -5,9 +5,17 @@ manifest_format = "2.0" project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" [[deps.ADTypes]] -git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.7" +version = "1.2.1" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -60,9 +68,9 @@ version = "0.1.36" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.2" +version = "4.0.4" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -125,10 +133,10 @@ version = "0.2.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" @@ -140,16 +148,19 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" +version = "7.10.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -157,7 +168,10 @@ version = "7.7.1" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -214,9 +228,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "c12f0e123d21091546d11164d2665e70558a32b3" +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.11" +version = "0.13.12" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -435,9 +449,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "e590becab0719330d8cc2a31fc07ef7a5804072b" +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.25.4" +version = "0.27.1" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -564,9 +578,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] @@ -658,9 +672,9 @@ uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[deps.IterTools]] git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" @@ -696,6 +710,12 @@ git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.9" +[[deps.LBFGSB]] +deps = ["L_BFGS_B_jll"] +git-tree-sha1 = "e2e6f53ee20605d0ea2be473480b7480bd5091b5" +uuid = "5be7bae1-8223-5378-bac3-9e7378a2f6e6" +version = "0.4.1" + [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" @@ -723,6 +743,12 @@ weakdeps = ["Serialization"] [deps.LRUCache.extensions] SerializationExt = ["Serialization"] +[[deps.L_BFGS_B_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "77feda930ed3f04b2b0fbb5bea89e69d3677c6b0" +uuid = "81d17ec3-03a1-5e46-b53e-bddc35a13473" +version = "3.0.1+0" + [[deps.LaTeXStrings]] git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1028,12 +1054,18 @@ uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" version = "0.3.3" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Pkg", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "ff78e9cada1349a0fb64995db7325949cb34b67b" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.19.3" +version = "3.25.0" + +[[deps.OptimizationBase]] +deps = ["ADTypes", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "Reexport", "Requires", "SciMLBase", "SparseArrays"] +git-tree-sha1 = "d44c297c3103b1a733304eeb0f70c43eede5ee60" +uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" +version = "0.0.7" - [deps.Optimization.extensions] + [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" OptimizationFiniteDiffExt = "FiniteDiff" OptimizationForwardDiffExt = "ForwardDiff" @@ -1043,7 +1075,7 @@ version = "3.19.3" OptimizationTrackerExt = "Tracker" OptimizationZygoteExt = "Zygote" - [deps.Optimization.weakdeps] + [deps.OptimizationBase.weakdeps] Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -1056,9 +1088,9 @@ version = "3.19.3" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "bea24fb320d58cb639e3cbc63f8eedde6c667bd3" +git-tree-sha1 = "4747c78bea226ac7876ae72e5e2521c43a5c927c" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.14" +version = "0.2.3" [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" @@ -1073,9 +1105,9 @@ version = "0.11.31" [[deps.PSIS]] deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] -git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" +git-tree-sha1 = "336b7fb8f3c767a934378b7edb2ca8687bee1515" uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" -version = "0.7.2" +version = "0.9.5" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1084,10 +1116,21 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[deps.Pathfinder]] -deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] -git-tree-sha1 = "9276ab48cb3a900e0bca214912c756d52625dadb" +deps = ["Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] +git-tree-sha1 = "b3438fdcea2ca8b71d577a7b5d3efa5ebbdcda55" uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -version = "0.7.0" +version = "0.8.6" + + [deps.Pathfinder.extensions] + PathfinderDynamicHMCExt = "DynamicHMC" + PathfinderTuringExt = ["Accessors", "DynamicPPL", "MCMCChains", "Turing"] + + [deps.Pathfinder.weakdeps] + Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] @@ -1134,6 +1177,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" @@ -1190,20 +1238,26 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1231,10 +1285,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.Roots]] deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] @@ -1271,15 +1325,28 @@ uuid = "26aad666-b158-4e64-9d35-0e672562fa48" version = "0.1.1" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.38.0" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] @@ -1288,6 +1355,11 @@ git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" @@ -1349,9 +1421,9 @@ version = "0.1.15" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1382,9 +1454,9 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.3" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -1426,10 +1498,10 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.21" [[deps.TOML]] deps = ["Dates"] @@ -1499,17 +1571,11 @@ version = "0.4.82" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "2798b422eb107bdf4433068d22ce054a44c4dd44" +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.31.4" +version = "0.32.0" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd index 6b209e9eb..841d6c58a 100644 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -1,6 +1,5 @@ --- title: Using External Sampler -# title: Using External Samplers on Turing Models engine: julia --- @@ -103,6 +102,7 @@ This is achieved by simulating the dynamics of a microcanonical Hamiltonian with Using this as well as other inference methods outside the Turing ecosystem is as simple as executing the code shown below: ```{julia} +#| eval: false using MicroCanonicalHMC # Create MCHMC sampler n_adapts = 1_000 # adaptation steps From 413651bee627ce6d582b6644288d614515d19e5b Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Mon, 20 May 2024 19:03:10 +0530 Subject: [PATCH 08/25] updated gitignore --- .gitignore | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitignore b/.gitignore index 41a9df9fd..d0d232d07 100644 --- a/.gitignore +++ b/.gitignore @@ -9,6 +9,8 @@ *.tex /tutorials/**/*.html /tutorials/**/*.pdf +/tutorials/**/.quarto/* +/tutorials/**/index_files/* Testing/ /*/*/jl_*/ /Manifest.toml From 6c590fec6e5d1759555b4d6c3ab132f446c45e63 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Tue, 21 May 2024 20:23:00 +0530 Subject: [PATCH 09/25] cleaning --- Project.toml | 22 ------ README.md | 68 ------------------- .../01-gaussian-mixture-model/Manifest.toml | 8 +-- tutorials/01-gaussian-mixture-model/index.qmd | 7 ++ tutorials/05-linear-regression/Manifest.toml | 20 +++--- tutorials/05-linear-regression/index.qmd | 9 --- .../Manifest.toml | 12 ++-- .../index.qmd | 1 - weave_tutorials.jl | 17 ----- 9 files changed, 27 insertions(+), 137 deletions(-) delete mode 100644 Project.toml delete mode 100644 README.md delete mode 100644 weave_tutorials.jl diff --git a/Project.toml b/Project.toml deleted file mode 100644 index 85b138848..000000000 --- a/Project.toml +++ /dev/null @@ -1,22 +0,0 @@ -name = "TuringTutorials" -uuid = "09eb8af7-3c66-4d0b-a457-e0c10c662b2b" -version = "0.1.0" - -[deps] -InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240" -Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a" -Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Requires = "ae029012-a4dd-5104-9daa-d747884805df" -Weave = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" - -[compat] -Requires = "1.1" -Weave = "0.10" -julia = "1.5" - -[extras] -Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[targets] -test = ["Test"] diff --git a/README.md b/README.md deleted file mode 100644 index 77d76d5ce..000000000 --- a/README.md +++ /dev/null @@ -1,68 +0,0 @@ -# Turing Tutorials - -[![Build status](https://badge.buildkite.com/ffe577bc0ee60b5514a50dbe464a7abb9f2a02c0f35be8ca43.svg?branch=master)](https://buildkite.com/julialang/turingtutorials/builds?branch=master) -[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle) - -This repository contains tutorials and docs on the probabilistic programming language **Turing**. - -The tutorials are defined in the `tutorials` folder. -All the outputs are generated automatically from that. - -Additional educational materials can be found at [StatisticalRethinkingJulia/SR2TuringPluto.jl](https://github.com/StatisticalRethinkingJulia/SR2TuringPluto.jl), which contains Turing adaptations of models from Richard McElreath's [Statistical Rethinking](https://xcelab.net/rm/statistical-rethinking/). -It is a highly recommended resource if you are looking for a greater breadth of examples. - -## Interactive Notebooks - -To run the tutorials interactively via Jupyter notebooks, install the package and open the tutorials like: - -```julia -# Install TuringTutorials -using Pkg -pkg"add https://github.com/TuringLang/TuringTutorials" - -# Generate notebooks in subdirectory "notebook" -using TuringTutorials -TuringTutorials.weave(; build=(:notebook,)) - -# Start Jupyter in "notebook" subdirectory -using IJulia -IJulia.notebook(; dir="notebook") -``` - -You can weave the notebooks to a different folder with - -```julia -TuringTutorials.weave(; build=(:notebook,), out_path_root="my/custom/directory") -``` - -Then the notebooks will be generated in the folder `my/custom/directory/notebook` and you can start Jupyter with - -```julia -IJulia.notebook(; dir="my/custom/directory/notebook") -``` - -## Contributing - -First of all, make sure that your current directory is `TuringTutorials`. -All of the files are generated from the jmd files in the `tutorials` folder. -So to change a tutorial, change one of the `.jmd` file in the `tutorials` folder. - -To run the generation process, do for example: - -```julia -using TuringTutorials -TuringTutorials.weave("00-introduction", "00_introduction.jmd") -``` - -To generate all files do: - -```julia -TuringTutorials.weave() -``` - -If you add new tutorials which require new packages, simply updating your local environment will change the project and manifest files. -When this occurs, the updated environment files should be included in the PR. - -## Credits - -The structure of this repository is mainly based on [SciMLTutorials.jl](https://github.com/SciML/SciMLTutorials.jl). diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 6017f6801..7d6912e68 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -1172,9 +1172,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.16" +version = "0.9.17" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1196,9 +1196,9 @@ version = "1.0.2" [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.1" +version = "0.10.2" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" diff --git a/tutorials/01-gaussian-mixture-model/index.qmd b/tutorials/01-gaussian-mixture-model/index.qmd index a8268d40e..7b6728544 100644 --- a/tutorials/01-gaussian-mixture-model/index.qmd +++ b/tutorials/01-gaussian-mixture-model/index.qmd @@ -112,12 +112,19 @@ setprogress!(false) ``` ```{julia} +#| output: false sampler = Gibbs(PG(100, :k), HMC(0.05, 10, :μ, :w)) nsamples = 100 nchains = 3 chains = sample(model, sampler, MCMCThreads(), nsamples, nchains); ``` +::: {.callout-warning collapse="true"} +## Sampling With Multiple Threads +The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains +will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) +::: + ```{julia} #| echo: false let diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index c8e651482..42c875d93 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -954,9 +954,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +git-tree-sha1 = "065c36f95709dd4a676dc6839a35d6fa6f192f24" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.3" +version = "7.1.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1257,9 +1257,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.16" +version = "0.9.17" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1287,9 +1287,9 @@ version = "0.1.5" [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.1" +version = "0.10.2" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1693,9 +1693,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.2" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2029,9 +2029,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "0.1.4" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" diff --git a/tutorials/05-linear-regression/index.qmd b/tutorials/05-linear-regression/index.qmd index 7bd3faff4..55e700b45 100644 --- a/tutorials/05-linear-regression/index.qmd +++ b/tutorials/05-linear-regression/index.qmd @@ -63,7 +63,6 @@ size(data) The next step is to get our data ready for testing. We'll split the `mtcars` dataset into two subsets, one for training our model and one for evaluating our model. Then, we separate the targets we want to learn (`MPG`, in this case) and standardize the datasets by subtracting each column's means and dividing by the standard deviation of that column. The resulting data is not very familiar looking, but this standardization process helps the sampler converge far easier. ```{julia} -#| eval: false # Remove the model column. select!(data, Not(:Model)) @@ -134,7 +133,6 @@ end With our model specified, we can call the sampler. We will use the No U-Turn Sampler ([NUTS](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS)) here. ```{julia} -#| eval: false model = linear_regression(train, train_target) chain = sample(model, NUTS(), 5_000) ``` @@ -142,14 +140,12 @@ chain = sample(model, NUTS(), 5_000) We can also check the densities and traces of the parameters visually using the `plot` functionality. ```{julia} -#| eval: false plot(chain) ``` It looks like all parameters have converged. ```{julia} -#| eval: false #| echo: false let ess_df = ess(chain) @@ -164,7 +160,6 @@ end A satisfactory test of our model is to evaluate how well it predicts. Importantly, we want to compare our model to existing tools like OLS. The code below uses the [GLM.jl]() package to generate a traditional OLS multiple regression model on the same data as our probabilistic model. ```{julia} -#| eval: false # Import the GLM package. using GLM @@ -185,7 +180,6 @@ StatsBase.reconstruct!(dt_targets, test_prediction_ols); The function below accepts a chain and an input matrix and calculates predictions. We use the samples of the model parameters in the chain starting with sample 200. ```{julia} -#| eval: false # Make a prediction given an input vector. function prediction(chain, x) p = get_params(chain[200:end, :, :]) @@ -197,7 +191,6 @@ end When we make predictions, we unstandardize them so they are more understandable. ```{julia} -#| eval: false # Calculate the predictions for the training and testing sets and unstandardize them. train_prediction_bayes = prediction(chain, train) StatsBase.reconstruct!(dt_targets, train_prediction_bayes) @@ -215,7 +208,6 @@ $$ where $y_i$ is the actual value (true MPG) and $\hat{y_i}$ is the predicted value using either OLS or Bayesian linear regression. A lower SSE indicates a closer fit to the data. ```{julia} -#| eval: false println( "Training set:", "\n\tBayes loss: ", @@ -234,7 +226,6 @@ println( ``` ```{julia} -#| eval: false #| echo: false let bayes_train_loss = msd(train_prediction_bayes, trainset[!, target]) diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml index 55fe89a5b..89e3a1b98 100644 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -924,9 +924,9 @@ version = "2.28.2+1" [[deps.MicroCanonicalHMC]] deps = ["AbstractMCMC", "Adapt", "Distributions", "ForwardDiff", "HDF5", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "MCMCDiagnosticTools", "Markdown", "ProgressMeter", "Random", "Statistics"] -git-tree-sha1 = "36c2a6c87b7fbb68b3be89d2ea07051aeb4f3690" +git-tree-sha1 = "e05f95a8256fdf83632f4ea3742f7fb43038a100" uuid = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" -version = "0.1.3" +version = "0.1.4" [[deps.MicroCollections]] deps = ["Accessors", "BangBang", "InitialValues"] @@ -961,9 +961,9 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.16" +version = "0.9.17" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -985,9 +985,9 @@ version = "1.0.2" [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.1" +version = "0.10.2" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd index 841d6c58a..05525f725 100644 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -102,7 +102,6 @@ This is achieved by simulating the dynamics of a microcanonical Hamiltonian with Using this as well as other inference methods outside the Turing ecosystem is as simple as executing the code shown below: ```{julia} -#| eval: false using MicroCanonicalHMC # Create MCHMC sampler n_adapts = 1_000 # adaptation steps diff --git a/weave_tutorials.jl b/weave_tutorials.jl deleted file mode 100644 index dc9b38513..000000000 --- a/weave_tutorials.jl +++ /dev/null @@ -1,17 +0,0 @@ -using TuringTutorials -target = ARGS[1] -if isdir(target) - if !isfile(joinpath(target, "Project.toml")) - error("Cannot weave folder $(target) without Project.toml!") - end - folder = target[11:end] # remove the tutorials/ - println("Weaving the $(folder) folder") - TuringTutorials.weave(folder) -elseif isfile(target) - folder = dirname(target)[11:end] # remove the tutorials/ - file = basename(target) - println("Weaving $(folder)/$(file)") - TuringTutorials.weave(folder, file) -else - error("Unable to find weaving target $(target)!") -end From e644ad4c76fe1cf380d270bd378816dd1ec9a0b8 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Tue, 21 May 2024 20:23:54 +0530 Subject: [PATCH 10/25] deleted builkite --- .buildkite/.gitignore | 1 - .buildkite/0_webui.yml | 28 ------ .buildkite/build_tutorial.sh | 10 -- .buildkite/cryptic_repo_keys/.gitignore | 6 -- .../cryptic_repo_keys/repo_key.2297e5e7 | Bin 256 -> 0 bytes .buildkite/launch_test_turing.yml | 16 ---- .buildkite/launch_tutorials.yml | 19 ---- .buildkite/launch_tutorials.yml.signature | Bin 96 -> 0 bytes .buildkite/path_processors/project-coalescing | 62 ------------ .buildkite/pipeline.yml | 15 --- .buildkite/publish_tutorials_output.sh | 25 ----- .buildkite/run_tutorial.yml | 90 ------------------ .buildkite/ssh_deploy.key.encrypted | Bin 432 -> 0 bytes .buildkite/test_turing.yml | 23 ----- 14 files changed, 295 deletions(-) delete mode 100644 .buildkite/.gitignore delete mode 100644 .buildkite/0_webui.yml delete mode 100755 .buildkite/build_tutorial.sh delete mode 100644 .buildkite/cryptic_repo_keys/.gitignore delete mode 100644 .buildkite/cryptic_repo_keys/repo_key.2297e5e7 delete mode 100644 .buildkite/launch_test_turing.yml delete mode 100644 .buildkite/launch_tutorials.yml delete mode 100644 .buildkite/launch_tutorials.yml.signature delete mode 100755 .buildkite/path_processors/project-coalescing delete mode 100644 .buildkite/pipeline.yml delete mode 100755 .buildkite/publish_tutorials_output.sh delete mode 100644 .buildkite/run_tutorial.yml delete mode 100644 .buildkite/ssh_deploy.key.encrypted delete mode 100644 .buildkite/test_turing.yml diff --git a/.buildkite/.gitignore b/.buildkite/.gitignore deleted file mode 100644 index 46de5d5e2..000000000 --- a/.buildkite/.gitignore +++ /dev/null @@ -1 +0,0 @@ -ssh_deploy.key diff --git a/.buildkite/0_webui.yml b/.buildkite/0_webui.yml deleted file mode 100644 index 095d101c6..000000000 --- a/.buildkite/0_webui.yml +++ /dev/null @@ -1,28 +0,0 @@ -agents: - queue: "juliaecosystem" - sandbox_capable: true - -steps: - - label: ":unlock: Launch tutorials build if hash check successful" - branches: "!gh-pages" - plugins: - - staticfloat/cryptic#v2: - signed_pipelines: - - pipeline: .buildkite/launch_tutorials.yml - signature_file: .buildkite/launch_tutorials.yml.signature - inputs: - - .buildkite/run_tutorial.yml - - .buildkite/publish_tutorials_output.sh - allow_hash_override: true - command: "true" - - - label: ":runner: Dynamically launch test suite" - plugins: - - staticfloat/forerunner: - # This will create one job overall, throwing all path information away - watch: - - "src/**/*.jl" - - "src/*.jl" - - "**/*.toml" - target: .buildkite/test_turing.yml - target_type: simple diff --git a/.buildkite/build_tutorial.sh b/.buildkite/build_tutorial.sh deleted file mode 100755 index 152f71c08..000000000 --- a/.buildkite/build_tutorial.sh +++ /dev/null @@ -1,10 +0,0 @@ -#!/bin/bash - -set -euo pipefail - -echo "--- Instantiate" -julia --project=. -e 'using Pkg; Pkg.instantiate(); Pkg.build()' - -# Run tutorial -echo "+++ Run tutorial for ${1}" -julia --project=. weave_tutorials.jl "${1}" diff --git a/.buildkite/cryptic_repo_keys/.gitignore b/.buildkite/cryptic_repo_keys/.gitignore deleted file mode 100644 index 0a351009a..000000000 --- a/.buildkite/cryptic_repo_keys/.gitignore +++ /dev/null @@ -1,6 +0,0 @@ - -# Ignore the unencrypted repo_key -repo_key - -# Ignore any agent keys (public or private) we have stored -agent_key* diff --git a/.buildkite/cryptic_repo_keys/repo_key.2297e5e7 b/.buildkite/cryptic_repo_keys/repo_key.2297e5e7 deleted file mode 100644 index 6065ce29fd9c951812b5cc7a3dfee1921593d97d..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 256 zcmV+b0ssDPB0ih9_2Q%m>$ zntDF4xOnTk)nA3o_sXJMu2RuZMx-mVivie0X$UIar_!Lp^$NaAFQDO%wV%{LCFn2j zf8HX9%nyK`F6CFS*1cVRo~61MiTfvrE3M&P0MQYo7mA`Lkw$Sho;)!wAGxaQ=T;2S zAKc4>=9Fd-tDe+xAp72f~K^z1t;UMagIY?i}Jji@HGKe3YkT>T9Wu^C#Z=57ZmOrBQf-Xh8ae9mBam!~t+e*YaaLUkcshE4 G8R}-X`iBz$ diff --git a/.buildkite/launch_test_turing.yml b/.buildkite/launch_test_turing.yml deleted file mode 100644 index ceb0f5399..000000000 --- a/.buildkite/launch_test_turing.yml +++ /dev/null @@ -1,16 +0,0 @@ -agents: - queue: "juliaecosystem" - sandbox_capable: true - -steps: - - label: ":runner: Dynamically launch test_turing" - branches: "!gh-pages" - plugins: - - staticfloat/forerunner: - # This will create one job overall, throwing all path information away - watch: - - "src/**/*.jl" - - "src/*.jl" - - "**/*.toml" - target: .buildkite/test_turing.yml - target_type: simple diff --git a/.buildkite/launch_tutorials.yml b/.buildkite/launch_tutorials.yml deleted file mode 100644 index aa7558b19..000000000 --- a/.buildkite/launch_tutorials.yml +++ /dev/null @@ -1,19 +0,0 @@ -agents: - queue: "juliaecosystem" - sandbox_capable: true - -steps: - - label: ":runner: Dynamically launch run_tutorial.yml" - branches: "!gh-pages" - env: - BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET: ${BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET?} - depends_on: - plugins: - - staticfloat/forerunner: - # This will create one job per project - watch: - - tutorials/**/*.jmd - - tutorials/**/*.toml - path_processor: .buildkite/path_processors/project-coalescing - target: .buildkite/run_tutorial.yml - target_type: template diff --git a/.buildkite/launch_tutorials.yml.signature b/.buildkite/launch_tutorials.yml.signature deleted file mode 100644 index 5f24402eb499245eed2c1a682873855b5f3efdf8..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 96 zcmV-m0H6O;VQh3|WM5zN(5qc4rwhHVq|e{7_MxJQ|GR$7Xrnk1N8!7C5+l0Efh{vE z`6ASCAFG)}eDo2@7LYGE{z%0=)2dSeGh%TJ@RbSLd4suCBzo^mcyQI};=^+-5;g!- C;4gOo diff --git a/.buildkite/path_processors/project-coalescing b/.buildkite/path_processors/project-coalescing deleted file mode 100755 index 26a0f5d87..000000000 --- a/.buildkite/path_processors/project-coalescing +++ /dev/null @@ -1,62 +0,0 @@ -#!/bin/bash - -# When a `.jmd` file is modified, it gets rewritten by itself; but when a `.toml` file -# (such as a `Project.toml` or a `Manifest.toml`) gets modified, we rebuild the entire -# directory. To avoid double-building, we coalesce all changes here, by converting -# changed files that end in `.toml` to their directory, then dropping all other files -# within that folder. - -# This will hold all files that need to be rebuilt, keyed by path and pointing to their -# containing project -declare -A FILES - -# This will hold all projects that need to be rebuilt, and will allow us to suppress -# values from FILES_TO_RUN -declare -A PROJECTS - -# Helper function to find the directory that contains the `Project.toml` for this file -function find_project() { - d="${1}" - # We define a basecase, that the path must begin with `tutorials` and is not allowed - # to move outside of that subtree. - while [[ "${d}" =~ tutorials/.* ]]; do - if [[ -f "${d}/Project.toml" ]]; then - echo "${d}" - return - fi - d="$(dirname "${d}")" - done -} - -# For each file, find its project, then if its a `.jmd` file, we add it to `FILES` -# If it's a `.toml` file, we add it to `PROJECTS`. -for f in "$@"; do - proj=$(find_project "${f}") - if [[ -z "${proj}" ]]; then - buildkite-agent annotate "Unable to find project for ${f}" --style "error" - continue - fi - - if [[ "${f}" == *.jmd ]]; then - FILES["${f}"]="${proj}" - elif [[ "${f}" == *.toml ]]; then - PROJECTS["${proj}"]=1 - else - buildkite-agent annotate "Unknown weave type for file ${f}" --style "error" - fi -done - -# We're going to emit the project directories first: -BUILD_TARGETS="${!PROJECTS[@]}" - -# But we're also going to emit any single files whose projects are _not_ contained -# in the projects we're already building -for f in "${!FILES[@]}"; do - proj=${FILES[$f]} - if ! [ ${PROJECTS[$proj]+x} ]; then - BUILD_TARGETS="${BUILD_TARGETS} ${f}" - fi -done - -# Output the build targets -echo "${BUILD_TARGETS}" diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml deleted file mode 100644 index 275f73185..000000000 --- a/.buildkite/pipeline.yml +++ /dev/null @@ -1,15 +0,0 @@ -steps: - - label: ":runner: Dynamically launch Pipelines" - plugins: - - staticfloat/forerunner: - # This will create one job per project - watch: - - tutorials/**/*.jmd - - tutorials/**/*.toml - path_processor: .buildkite/path_processors/project-coalescing - target: .buildkite/run_tutorial.yml - target_type: template - agents: - queue: "juliacpu" - fastcpu: true - if: build.message !~ /\[skip ci\]/ \ No newline at end of file diff --git a/.buildkite/publish_tutorials_output.sh b/.buildkite/publish_tutorials_output.sh deleted file mode 100755 index e7a6b4fe9..000000000 --- a/.buildkite/publish_tutorials_output.sh +++ /dev/null @@ -1,25 +0,0 @@ -#!/bin/bash - -# Ensure that our git wants to talk to github without prompting -mkdir -p ~/.ssh -ssh-keyscan github.com >> ~/.ssh/known_hosts -git config --global user.email "buildkite@julialang.org" -git config --global user.name "Turing Tutorials CI" - -# Clone TuringTutorialsOutput to temporary directory -temp_dir=$(mktemp -d) -git -C "${temp_dir}" clone git@github.com:TuringLang/TuringTutorialsOutput . - -# Copy our output artifacts into it: -for d in html markdown notebook pdf script; do - cp -vRa "${d}/" "${temp_dir}" -done -cp -va *.md *.bib "${temp_dir}" - -# Commit the result up to output -set -e -git -C "${temp_dir}" add . -git -C "${temp_dir}" commit -m "Automatic build\nPublished by build of: ${BUILDKITE_REPO%.git}/commit/${BUILDKITE_COMMIT}" -git -C "${temp_dir}" push - -rm -rf "${temp_dir}" diff --git a/.buildkite/run_tutorial.yml b/.buildkite/run_tutorial.yml deleted file mode 100644 index e063c3db8..000000000 --- a/.buildkite/run_tutorial.yml +++ /dev/null @@ -1,90 +0,0 @@ -agents: - queue: "juliaecosystem" - sandbox_capable: true - arch: x86_64 - -# This is a pipeline that weaves a tutorial, then uploads the resultant -# .PDF and other reports as (buildkite, not Julia) artifacts. The `coppermind` -# configuration memoizes the result, so that identical inputs don't get -# weaved multiple times. -steps: - - label: ":hammer: {PATH}" - key: "tutorial-{SANITIZED_PATH}" - env: - BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET: ${BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET?} - plugins: - - staticfloat/cryptic#v2: - variables: - - BUILDKITE_S3_ACCESS_KEY_ID="U2FsdGVkX1+WPOr26vcEpOV6IfWQ/wwzUGjFRYux1AFtQjongCK2rnzySL6mkLdR" - - BUILDKITE_S3_SECRET_ACCESS_KEY="U2FsdGVkX19cbtDEWMwL+gpAtByCS8SJzX0hZ6qZ68L2bfjgAWJhbkb14T9uNwJZgKzWymvy0G9LwnJD/0VQ+Q==" - - BUILDKITE_S3_DEFAULT_REGION="U2FsdGVkX1/cORlxhXcxhja2JkqC0f8RmaGYxvGBbEg=" - - JuliaCI/julia#v1: - version: 1 - - staticfloat/sandbox: - rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz" - rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f" - workspaces: - # Include the julia we just downloaded - - "/cache/julia-buildkite-plugin:/cache/julia-buildkite-plugin" - - staticfloat/coppermind#v1: - inputs: - # We are sensitive to the actual tutorial changing - - {PATH} - # We are sensitive to the source code of this package changing - - src/**/*.jl - # We are sensitive to our overall dependencies changing - - ./*.toml - outputs: - - html/**/*.html - - markdown/**/*.md - - markdown/**/figures/* - - notebook/**/*.ipynb - - pdf/**/*.pdf - - script/**/*.jl - s3_prefix: s3://julialang-buildkite-artifacts/turingtutorials - timeout_in_minutes: 360 - commands: | - # We don't need these secrets at this point, so clear them out so they don't show up in debugging outputs - BUILDKITE_S3_ACCESS_KEY_ID="" BUILDKITE_S3_SECRET_ACCESS_KEY="" ./.buildkite/build_tutorial.sh {PATH} - - label: ":rocket: Publish {PATH}" - env: - BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET: ${BUILDKITE_PLUGIN_CRYPTIC_BASE64_SIGNED_JOB_ID_SECRET?} - plugins: - - staticfloat/cryptic#v2: - variables: - - BUILDKITE_S3_ACCESS_KEY_ID="U2FsdGVkX1+WPOr26vcEpOV6IfWQ/wwzUGjFRYux1AFtQjongCK2rnzySL6mkLdR" - - BUILDKITE_S3_SECRET_ACCESS_KEY="U2FsdGVkX19cbtDEWMwL+gpAtByCS8SJzX0hZ6qZ68L2bfjgAWJhbkb14T9uNwJZgKzWymvy0G9LwnJD/0VQ+Q==" - - BUILDKITE_S3_DEFAULT_REGION="U2FsdGVkX1/cORlxhXcxhja2JkqC0f8RmaGYxvGBbEg=" - files: - - .buildkite/ssh_deploy.key - - JuliaCI/julia#v1: - version: 1 - - staticfloat/sandbox: - rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz" - rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f" - workspaces: - # Include the julia we just downloaded - - "/cache/julia-buildkite-plugin:/cache/julia-buildkite-plugin" - # Use coppermind to download the tutorial results that were calculated in the - # weaving job above. Note we still list `outputs` here, since we have the - # option to extract only a subset of them here. - - staticfloat/coppermind#v1: - input_from: "tutorial-{SANITIZED_PATH}" - outputs: - - html/**/*.html - - markdown/**/*.md - - markdown/**/figures/* - - notebook/**/*.ipynb - - pdf/**/*.pdf - - script/**/*.jl - s3_prefix: s3://julialang-buildkite-artifacts/turingtutorials - - staticfloat/ssh-agent: - keyfiles: - - .buildkite/ssh_deploy.key - concurrency: 1 - concurrency_group: "turingtutorials/deploy" - commands: .buildkite/publish_tutorials_output.sh - # Don't run this unless we're on the master branch, and not until the actual weave - # command has had a chance to run. - depends_on: "tutorial-{SANITIZED_PATH}" - branches: "master" diff --git a/.buildkite/ssh_deploy.key.encrypted b/.buildkite/ssh_deploy.key.encrypted deleted file mode 100644 index 76896759c18f852b8d971e8c40de044a3bf083c3..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 432 zcmV;h0Z;x@VQh3|WM5w%_%036be#bQnNEC-)25Dw5D8uouX96n?l{V2td5-%6PL|e zA2Yv9g@HPcBvStr5d8jG85{Lii&rZcR&<*XJ@5wq5%#gLInHP6%3MEG$)o@R2pENk z5fI3?a6sS6D(t7HY-O_jZme5ix=?-c8L0DsrFPnEO3@Bj<#hu9_93uZ=}*^jsQV8X;v zAIV~TEskMy2qn72`|0s^7;fOHKX!$#M29NEoHJ`gP5XhQl9|}pVWRD3J!>ev-aR?kq_QP07En-3Nf>3@SC=G&S2XXmWFT1maD z8QmH=c&%jeWz0I1Tl>$zt@x99_6(>XUuP?od*q<*WXU(Y)Fg*_QX~}SoE-senzrykMBh#gpT%KTai{32*(&^!S?Xa1FeGT*}aF*cL*{=0Bj>n5Mj;GO4 a?jZc}eO@iip3%xh$?+? Date: Tue, 21 May 2024 20:24:23 +0530 Subject: [PATCH 11/25] deleted current workflows --- .github/workflows/CompatHelper.yml | 29 ----------------------- .github/workflows/Format.yml | 34 --------------------------- .github/workflows/UpdateManifests.yml | 32 ------------------------- 3 files changed, 95 deletions(-) delete mode 100644 .github/workflows/CompatHelper.yml delete mode 100644 .github/workflows/Format.yml delete mode 100644 .github/workflows/UpdateManifests.yml diff --git a/.github/workflows/CompatHelper.yml b/.github/workflows/CompatHelper.yml deleted file mode 100644 index c37040970..000000000 --- a/.github/workflows/CompatHelper.yml +++ /dev/null @@ -1,29 +0,0 @@ -name: CompatHelper - -on: - schedule: - - cron: 0 0 * * * - workflow_dispatch: - -jobs: - CompatHelper: - runs-on: ubuntu-latest - steps: - - uses: julia-actions/setup-julia@v1 - with: - version: 1.6 - - name: "Install CompatHelper" - run: | - using Pkg - name = "CompatHelper" - uuid = "aa819f21-2bde-4658-8897-bab36330d9b7" - version = "3" - Pkg.add(; name, uuid, version) - shell: julia --color=yes {0} - - name: "Run CompatHelper" - run: | - using CompatHelper - CompatHelper.main() - shell: julia --color=yes {0} - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/Format.yml b/.github/workflows/Format.yml deleted file mode 100644 index 6c114764c..000000000 --- a/.github/workflows/Format.yml +++ /dev/null @@ -1,34 +0,0 @@ -name: Format - -on: - pull_request: - push: - branches: - - gh/update_manifests - -concurrency: - # Skip intermediate builds: always. - # Cancel intermediate builds: only if it is a pull request build. - group: ${{ github.workflow }}-${{ github.ref }} - cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} - -jobs: - format: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - uses: julia-actions/setup-julia@latest - with: - version: 1 - - name: Format code - run: | - using Pkg - Pkg.add(; name="JuliaFormatter", uuid="98e50ef6-434e-11e9-1051-2b60c6c9e899") - using JuliaFormatter - format("."; verbose=true) - shell: julia --color=yes {0} - - uses: reviewdog/action-suggester@v1 - with: - tool_name: JuliaFormatter - fail_on_error: true - diff --git a/.github/workflows/UpdateManifests.yml b/.github/workflows/UpdateManifests.yml deleted file mode 100644 index b03673eda..000000000 --- a/.github/workflows/UpdateManifests.yml +++ /dev/null @@ -1,32 +0,0 @@ -name: Weekly Update - -on: - schedule: - - cron: 0 0 * * 6 - workflow_dispatch: - -permissions: - contents: write - pull-requests: write - -jobs: - update: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - with: - ssh-key: ${{ secrets.UPDATE_MANIFESTS_KEY }} - - uses: julia-actions/setup-julia@v1 - with: - version: 1 - - uses: julia-actions/cache@v1 - - name: "Update Manifest.toml files" - run: find tutorials/ -type f -name Manifest.toml -exec julia --color=yes -e "using Pkg; Pkg.activate(dirname(ARGS[1])); Pkg.instantiate(); Pkg.update()" {} \; - - run: git status - - uses: peter-evans/create-pull-request@v4 - with: - delete-branch: true - branch: 'gh/update_manifests' - commit-message: 'Update manifest files' - title: '[UpdateManifests.yml] Update manifest files' - body: '' From c23005a306a2aec8714120d219d44d16fc3a48d3 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Tue, 21 May 2024 20:24:59 +0530 Subject: [PATCH 12/25] deleted current src & test folder --- src/TuringTutorials.jl | 153 ----------------------------------------- src/weaveplots.jl | 22 ------ test/runtests.jl | 69 ------------------- 3 files changed, 244 deletions(-) delete mode 100644 src/TuringTutorials.jl delete mode 100644 src/weaveplots.jl delete mode 100644 test/runtests.jl diff --git a/src/TuringTutorials.jl b/src/TuringTutorials.jl deleted file mode 100644 index 6d31d4064..000000000 --- a/src/TuringTutorials.jl +++ /dev/null @@ -1,153 +0,0 @@ -module TuringTutorials - -using Requires: Requires -using Weave: Weave - -using InteractiveUtils: InteractiveUtils -using Markdown: Markdown -using Pkg: Pkg - -const REPO_DIR = dirname(@__DIR__) -const CSS_FILE = joinpath(REPO_DIR, "templates", "skeleton_css.css") -const LATEX_FILE = joinpath(REPO_DIR, "templates", "julia_tex.tpl") -const WEAVE_DIRECTORY = "tutorials" - -const DEFAULT_BUILD = (:script, :html, :github) - -function __init__() - Requires.@require Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" include( - "weaveplots.jl" - ) -end - -function weave( - folder::AbstractString, - file::AbstractString; - out_path_root::AbstractString=pwd(), - build::Tuple{Vararg{Symbol}}=DEFAULT_BUILD, -) - if !issubset(build, (:script, :html, :pdf, :github, :notebook)) - throw( - ArgumentError( - "only build types :script, :html, :pdf, :github, and :notebook are supported", - ), - ) - end - - target = joinpath(REPO_DIR, WEAVE_DIRECTORY, folder, file) - @info("Weaving $(target)") - - # Activate project - # TODO: use separate Julia process? - if isfile(joinpath(REPO_DIR, WEAVE_DIRECTORY, folder, "Project.toml")) && - (:github in build || :html in build || :pdf in build) - @info("Instantiating", folder) - Pkg.activate(joinpath(REPO_DIR, WEAVE_DIRECTORY, folder)) - Pkg.instantiate() - Pkg.build() - - @info("Printing out `Pkg.status()`") - Pkg.status() - end - - args = Dict{Symbol,String}(:folder => folder, :file => file) - if :script in build - println("Building Script") - dir = joinpath(out_path_root, "script", basename(folder)) - mkpath(dir) - Weave.tangle(target; out_path=dir) - end - if :html in build - println("Building HTML") - dir = joinpath(out_path_root, "html", basename(folder)) - mkpath(dir) - Weave.weave( - target; doctype="md2html", out_path=dir, args=args, css=CSS_FILE, fig_ext=".svg" - ) - end - if :pdf in build - println("Building PDF") - dir = joinpath(out_path_root, "pdf", basename(folder)) - mkpath(dir) - try - Weave.weave( - target; doctype="md2pdf", out_path=dir, template=LATEX_FILE, args=args - ) - catch ex - @warn "PDF generation failed" exception = (ex, catch_backtrace()) - end - end - if :github in build - println("Building Github Markdown") - dir = joinpath(out_path_root, "markdown", basename(folder)) - mkpath(dir) - Weave.weave(target; doctype="github", out_path=dir, args=args) - end - if :notebook in build - println("Building Notebook") - dir = joinpath(out_path_root, "notebook", basename(folder)) - mkpath(dir) - Weave.convert_doc(target, joinpath(dir, first(splitext(file)) * ".ipynb")) - end -end - -# Weave all tutorials -function weave(; kwargs...) - for folder in readdir(joinpath(REPO_DIR, WEAVE_DIRECTORY)) - weave(folder; kwargs...) - end -end - -# Weave a folder of tutorials -function weave(folder::AbstractString; kwargs...) - for file in readdir(joinpath(REPO_DIR, WEAVE_DIRECTORY, folder)) - # Skip non-`.jmd` files - endswith(file, ".jmd") || continue - - weave(folder, file; kwargs...) - end -end - -function tutorial_footer(folder=nothing, file=nothing) - display( - Markdown.md""" -## Appendix -These tutorials are a part of the TuringTutorials repository, found at: . -""", - ) - if folder !== nothing && file !== nothing - display(Markdown.parse(""" - To locally run this tutorial, do the following commands: - ``` - using TuringTutorials - TuringTutorials.weave("$folder", "$file") - ``` - """)) - end - display(Markdown.md"Computer Information:") - vinfo = sprint(InteractiveUtils.versioninfo) - display(Markdown.parse(""" - ``` - $(vinfo) - ``` - """)) - - display(Markdown.md""" - Package Information: - """) - - proj = sprint(io -> Pkg.status(; io=io)) - mani = sprint(io -> Pkg.status(; io=io, mode=Pkg.PKGMODE_MANIFEST)) - - md = """ - ``` - $(chomp(proj)) - ``` - And the full manifest: - ``` - $(chomp(mani)) - ``` - """ - return display(Markdown.parse(md)) -end -end # module diff --git a/src/weaveplots.jl b/src/weaveplots.jl deleted file mode 100644 index 6850ba9d2..000000000 --- a/src/weaveplots.jl +++ /dev/null @@ -1,22 +0,0 @@ -# HACK: So Weave.jl has a submodule `WeavePlots` which is loaded using Requires.jl if Plots.jl is available. -# This means that if we want to overload methods in that submodule we need to wait until `Plots.jl` has been loaded. -using .Plots: Plots -using .Weave: Weave - -# HACK -function Weave.WeavePlots.add_plots_figure( - report::Weave.Report, plot::Plots.AnimatedGif, ext -) - chunk = report.cur_chunk - full_name, rel_name = Weave.get_figname(report, chunk; ext=ext) - - # A `AnimatedGif` has been saved somewhere temporarily, so make a copy to `full_name`. - cp(plot.filename, full_name; force=true) - push!(report.figures, rel_name) - report.fignum += 1 - return full_name -end - -function Base.display(report::Weave.Report, m::MIME"text/plain", plot::Plots.AnimatedGif) - return Weave.WeavePlots.add_plots_figure(report, plot, ".gif") -end diff --git a/test/runtests.jl b/test/runtests.jl deleted file mode 100644 index 21aea25d8..000000000 --- a/test/runtests.jl +++ /dev/null @@ -1,69 +0,0 @@ -using TuringTutorials -using Test - -# (Re-)create an empty folder of tutorials for testing -pkgdir = dirname(dirname(pathof(TuringTutorials))) -tutorials_dir = joinpath(pkgdir, "tutorials", "Testing") -rm(tutorials_dir; force=true, recursive=true) -mkpath(tutorials_dir) - -# Add to the folder of tutorials an empty Project.toml and a jmd file -touch(joinpath(tutorials_dir, "Project.toml")) -write( - joinpath(tutorials_dir, "test.jmd"), - """ - --- - title: Test - author: TuringLang team - --- - - This is a test of the builder system. - - ```julia, echo=false, skip="notebook" - using TuringTutorials - TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) - ``` - """, -) - -# Incorrect build types -@test_throws ArgumentError TuringTutorials.weave(tutorials_dir, "test.jmd"; build=(:doc,)) - -# Generate default output -TuringTutorials.weave( - tutorials_dir, - "test.jmd"; - out_path_root=pkgdir, - build=(:script, :html, :github, :notebook), -) - -write( - joinpath(tutorials_dir, "test_error.jmd"), - """ - --- - title: Test - author: TuringLang team - weave_options: - error : false - --- - - This is a test of the builder system. - - The code throws an error. - ```julia - error("some error occurred") - ``` - - ```julia, echo=false, skip="notebook" - using TuringTutorials - TuringTutorials.tutorial_footer(WEAVE_ARGS[:folder], WEAVE_ARGS[:file]) - ``` - """, -) - -# Generate default output -for build in (:html, :github) - @test_throws ErrorException("some error occurred") TuringTutorials.weave( - tutorials_dir, "test_error.jmd"; out_path_root=pkgdir, build=(build,) - ) -end From 5b117cadb9e87a79cb7d9f7749dd11b2bdd55b94 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Tue, 21 May 2024 20:27:24 +0530 Subject: [PATCH 13/25] delete formatter file --- .JuliaFormatter.toml | 3 --- 1 file changed, 3 deletions(-) delete mode 100644 .JuliaFormatter.toml diff --git a/.JuliaFormatter.toml b/.JuliaFormatter.toml deleted file mode 100644 index 55772392c..000000000 --- a/.JuliaFormatter.toml +++ /dev/null @@ -1,3 +0,0 @@ -style="blue" -format_markdown=true - From f47a336499cf203a0e4cd95280c8ee8cfe48cb0d Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 14:04:35 +0530 Subject: [PATCH 14/25] added _quarto.yml ' --- _quarto.yml | 146 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 146 insertions(+) create mode 100644 _quarto.yml diff --git a/_quarto.yml b/_quarto.yml new file mode 100644 index 000000000..3f75bdcb5 --- /dev/null +++ b/_quarto.yml @@ -0,0 +1,146 @@ +project: + type: website + render: + - "*.qmd" + - "!/tutorials/" + preview: + port: 4200 + browser: true + +# These cannot be used as variables. They are reserved for the project configuration. +website: + title: "Turing.jl" + site-url: https://turinglang.org/docs/ + site-path: "/" + favicon: "assets/favicon.ico" + search: + location: navbar + type: overlay + navbar: + logo: "assets/images/turing-logo.svg" + background: "#073c44" + foreground: "#ffffff" + left: + - href: docs/using-turing/getting-started/ + text: Get Started + - href: docs/tutorials/00-introduction/ + text: Tutorials + - href: https://turinglang.org/news/ + text: News + - href: https://turinglang.org/team/ + text: Team + tools: + - icon: twitter + href: https://x.com/TuringLang + text: Turing Twitter + - icon: github + href: https://github.com/TuringLang/Turing.jl + text: Turing GitHub + + sidebar: + - id: documentation + collapse-level: 1 + contents: + - section: "Documentation" + href: docs/index.qmd + contents: + - section: "Using Turing" + collapse-level: 1 + # href: docs/using-turing/getting-started/ + contents: + - docs/using-turing/getting-started/index.qmd + - text: "Quick Start" + href: docs/using-turing/quick-start/index.qmd + - docs/using-turing/guide/index.qmd + - docs/using-turing/advanced-usage/index.qmd + - docs/using-turing/automatic-differentiation/index.qmd + - docs/using-turing/performance-tips/index.qmd + - docs/using-turing/using-dynamichmc/index.qmd + - docs/using-turing/sampler-visualization/index.qmd + - text: "External Samplers" + href: docs/using-turing/external-samplers/index.qmd + + - section: "For Developers" + collapse-level: 1 + contents: + - docs/for-developers/compiler/index.qmd + - docs/for-developers/interface/index.qmd + - docs/for-developers/abstractmcmc-turing/index.qmd + - docs/for-developers/variational-inference/index.qmd + + - section: "Tutorials" + contents: + - text: Home + href: docs/tutorials/index.qmd + - docs/tutorials/00-introduction/index.qmd + - text: Gaussian Mixture Models + href: docs/tutorials/01-gaussian-mixture-model/index.qmd + - docs/tutorials/02-logistic-regression/index.qmd + - docs/tutorials/03-bayesian-neural-network/index.qmd + - text: Hidden Markov Models + href: docs/tutorials/04-hidden-markov-model/index.qmd + - docs/tutorials/05-linear-regression/index.qmd + - text: Infinite Mixture Model + href: docs/tutorials/06-infinite-mixture-model/index.qmd + - docs/tutorials/07-poisson-regression/index.qmd + - text: Multinomial Logistic Regression + href: docs/tutorials/08-multinomial-logistic-regression/index.qmd + - text: Variational Inference + href: docs/tutorials/09-variational-inference/index.qmd + - text: "Bayesian Differential Equations" + href: docs/tutorials/10-bayesian-differential-equations/index.qmd + - text: "Probabilistic PCA" + href: docs/tutorials/11-probabilistic-pca/index.qmd + - text: "Gaussian Process LVM" + href: docs/tutorials/12-gplvm/index.qmd + - docs/tutorials/13-seasonal-time-series/index.qmd + - text: "A Mini Turing Compiler" + href: docs/tutorials/14-minituring/index.qmd + - text: "Intro to Gaussian Processes" + href: docs/tutorials/15-gaussian-processes/index.qmd + - section: "Contributing" + contents: + - text: "How to Contribute" + href: docs/contributing/contributing-guide/index.qmd + - docs/contributing/contributing-style-guide/index.qmd + + page-footer: + background: "#073c44" + left: | + Turing is created by Hong Ge, and lovingly maintained by the core team of volunteers.
+ The contents of this website are © 2024 under the terms of the MIT License. + + right: + - icon: twitter + href: https://x.com/TuringLang + aria-label: Turing Twitter + - icon: github + href: https://github.com/TuringLang/Turing.jl + aria-label: Turing GitHub + + back-to-top-navigation: true + repo-url: https://github.com/TuringLang/TuringTutorials + repo-actions: [edit, issue] + repo-link-target: _blank + page-navigation: true + +format: + html: + theme: + light: cosmo + css: theming/styles.css + toc: true + smooth-scroll: true + code-overflow: wrap + output-block-background: true + # code-block-border-left: true + # code-line-numbers: true + +execute: + freeze: auto + +# Global Variables to use in any qmd files using: +# {{< meta site-url >}} +site-url: https://turinglang.org/docs/ +get-started: docs/using-turing/getting-started/ +tutorials-intro: docs/tutorials/00-introduction/ \ No newline at end of file From 2a2c5ab1f275bde9a40e874f68c98676b5916f7c Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 16:13:23 +0530 Subject: [PATCH 15/25] updated _quarto.yml --- .github/workflows/publish.yml | 48 +++++++++++++++++++++++++ .gitignore | 3 ++ _quarto.yml | 66 +++++++++++++++++------------------ tutorials/_metadata.yml | 19 ++++++++++ 4 files changed, 103 insertions(+), 33 deletions(-) create mode 100644 .github/workflows/publish.yml create mode 100755 tutorials/_metadata.yml diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml new file mode 100644 index 000000000..4945a2678 --- /dev/null +++ b/.github/workflows/publish.yml @@ -0,0 +1,48 @@ +on: + push: + branches: + - master + +name: Deploy to GitHub Pages + +jobs: + build-and-deploy: + runs-on: ubuntu-latest + + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: Setup Julia + uses: julia-actions/setup-julia@v2 + with: + version: '1.10' + + - name: Set up Quarto + uses: quarto-dev/quarto-actions/setup@v2 + with: + version: pre-release + - name: Restore cached _freeze folder + id: cache-primes-restore + uses: actions/cache/restore@v4 + with: + path: | + _freeze/ + key: ${{ runner.os }}-primes + + - name: Render Quarto site + run: quarto render + + - name: Save _freeze folder + id: cache-primes-save + uses: actions/cache/save@v4 + with: + path: | + _freeze/ + key: ${{ steps.cache-primes-restore.outputs.cache-primary-key }} + + - name: Deploy to GitHub Pages + uses: JamesIves/github-pages-deploy-action@v4 + with: + branch: gh-pages + folder: _site \ No newline at end of file diff --git a/.gitignore b/.gitignore index d0d232d07..45b1b80b4 100644 --- a/.gitignore +++ b/.gitignore @@ -16,3 +16,6 @@ Testing/ /Manifest.toml /test/Manifest.toml .vscode +_freeze +_site +.quarto \ No newline at end of file diff --git a/_quarto.yml b/_quarto.yml index 3f75bdcb5..4bd7f46c1 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -48,61 +48,61 @@ website: collapse-level: 1 # href: docs/using-turing/getting-started/ contents: - - docs/using-turing/getting-started/index.qmd + - tutorials/docs-00-getting-started/index.qmd - text: "Quick Start" - href: docs/using-turing/quick-start/index.qmd - - docs/using-turing/guide/index.qmd - - docs/using-turing/advanced-usage/index.qmd - - docs/using-turing/automatic-differentiation/index.qmd - - docs/using-turing/performance-tips/index.qmd - - docs/using-turing/using-dynamichmc/index.qmd - - docs/using-turing/sampler-visualization/index.qmd + href: docs/docs-14-using-turing-quick-start/index.qmd + - tutorials/docs-12-using-turing-guide/index.qmd + - tutorials/docs-09-using-turing-advanced/index.qmd + - tutorials/docs-10-using-turing-autodiff/index.qmd + - tutorials/docs-13-using-turing-performance-tips/index.qmd + - tutorials/docs-11-using-turing-dynamichmc/index.qmd + - tutorials/docs-15-using-turing-sampler-viz/index.qmd - text: "External Samplers" - href: docs/using-turing/external-samplers/index.qmd + href: tutorials/docs-16-using-turing-external-samplers/index.qmd - section: "For Developers" collapse-level: 1 contents: - - docs/for-developers/compiler/index.qmd - - docs/for-developers/interface/index.qmd - - docs/for-developers/abstractmcmc-turing/index.qmd - - docs/for-developers/variational-inference/index.qmd + - tutorials/docs-05-for-developers-compiler/index.qmd + - tutorials/docs-06-for-developers-interface/index.qmd + - tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd + - tutorials/docs-07-for-developers-variational-inference/index.qmd - section: "Tutorials" contents: - - text: Home - href: docs/tutorials/index.qmd - - docs/tutorials/00-introduction/index.qmd + # - text: Home + # href: docs/tutorials/index.qmd + - tutorials/00-introduction/index.qmd - text: Gaussian Mixture Models - href: docs/tutorials/01-gaussian-mixture-model/index.qmd - - docs/tutorials/02-logistic-regression/index.qmd - - docs/tutorials/03-bayesian-neural-network/index.qmd + href: tutorials/01-gaussian-mixture-model/index.qmd + - tutorials/02-logistic-regression/index.qmd + - tutorials/03-bayesian-neural-network/index.qmd - text: Hidden Markov Models - href: docs/tutorials/04-hidden-markov-model/index.qmd - - docs/tutorials/05-linear-regression/index.qmd + href: tutorials/04-hidden-markov-model/index.qmd + - tutorials/05-linear-regression/index.qmd - text: Infinite Mixture Model - href: docs/tutorials/06-infinite-mixture-model/index.qmd - - docs/tutorials/07-poisson-regression/index.qmd + href: tutorials/06-infinite-mixture-model/index.qmd + - tutorials/07-poisson-regression/index.qmd - text: Multinomial Logistic Regression - href: docs/tutorials/08-multinomial-logistic-regression/index.qmd + href: tutorials/08-multinomial-logistic-regression/index.qmd - text: Variational Inference - href: docs/tutorials/09-variational-inference/index.qmd + href: tutorials/09-variational-inference/index.qmd - text: "Bayesian Differential Equations" - href: docs/tutorials/10-bayesian-differential-equations/index.qmd + href: tutorials/10-bayesian-differential-equations/index.qmd - text: "Probabilistic PCA" - href: docs/tutorials/11-probabilistic-pca/index.qmd + href: tutorials/11-probabilistic-pca/index.qmd - text: "Gaussian Process LVM" - href: docs/tutorials/12-gplvm/index.qmd - - docs/tutorials/13-seasonal-time-series/index.qmd + href: tutorials/12-gplvm/index.qmd + - tutorials/13-seasonal-time-series/index.qmd - text: "A Mini Turing Compiler" - href: docs/tutorials/14-minituring/index.qmd + href: tutorials/14-minituring/index.qmd - text: "Intro to Gaussian Processes" - href: docs/tutorials/15-gaussian-processes/index.qmd + href: tutorials/15-gaussian-processes/index.qmd - section: "Contributing" contents: - text: "How to Contribute" - href: docs/contributing/contributing-guide/index.qmd - - docs/contributing/contributing-style-guide/index.qmd + href: tutorials/docs-01-contributing-guide/index.qmd + - tutorials/docs-02-contributing-style-guide/index.qmd page-footer: background: "#073c44" diff --git a/tutorials/_metadata.yml b/tutorials/_metadata.yml new file mode 100755 index 000000000..28fab4116 --- /dev/null +++ b/tutorials/_metadata.yml @@ -0,0 +1,19 @@ +format: + html: + toc-title: "Table of Contents" + code-fold: false + code-overflow: scroll +execute: + echo: true + output: true + error: true +include-in-header: + - text: | + \ No newline at end of file From 2659e2d622fb77072c395106774509c3024b6ac2 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 16:17:19 +0530 Subject: [PATCH 16/25] fix _quarto.yml --- _quarto.yml | 3 --- 1 file changed, 3 deletions(-) diff --git a/_quarto.yml b/_quarto.yml index 4bd7f46c1..8f5977cc8 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -1,8 +1,5 @@ project: type: website - render: - - "*.qmd" - - "!/tutorials/" preview: port: 4200 browser: true From 2f7dd96e1a7462d492d32fa013df1af4a7f55160 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 20:26:26 +0530 Subject: [PATCH 17/25] added Pkg commands in each notebook --- tutorials/00-introduction/Manifest.toml | 0 tutorials/00-introduction/Project.toml | 12 +- tutorials/00-introduction/index.qmd | 459 ++--- .../01-gaussian-mixture-model/Manifest.toml | 0 .../01-gaussian-mixture-model/Project.toml | 14 +- tutorials/01-gaussian-mixture-model/index.qmd | 401 ++-- .../02-logistic-regression/Manifest.toml | 8 +- tutorials/02-logistic-regression/Project.toml | 20 +- tutorials/02-logistic-regression/index.qmd | 527 ++--- .../03-bayesian-neural-network/Manifest.toml | 0 .../03-bayesian-neural-network/Project.toml | 16 +- .../03-bayesian-neural-network/index.qmd | 396 ++-- .../04-hidden-markov-model/Manifest.toml | 0 tutorials/04-hidden-markov-model/Project.toml | 8 +- tutorials/04-hidden-markov-model/index.qmd | 377 ++-- tutorials/05-linear-regression/Manifest.toml | 20 +- tutorials/05-linear-regression/Project.toml | 20 +- tutorials/05-linear-regression/index.qmd | 491 ++--- .../06-infinite-mixture-model/Manifest.toml | 0 .../06-infinite-mixture-model/Project.toml | 8 +- tutorials/06-infinite-mixture-model/index.qmd | 561 +++--- tutorials/07-poisson-regression/Manifest.toml | 0 tutorials/07-poisson-regression/Project.toml | 18 +- tutorials/07-poisson-regression/index.qmd | 449 +++-- .../Manifest.toml | 0 .../Project.toml | 0 .../index.qmd | 448 +++-- .../09-variational-inference/Manifest.toml | 0 .../09-variational-inference/Project.toml | 26 +- tutorials/09-variational-inference/index.qmd | 1748 +++++++++-------- .../Manifest.toml | 0 .../Project.toml | 16 +- .../index.qmd | 896 +++++---- tutorials/11-probabilistic-pca/Manifest.toml | 0 tutorials/11-probabilistic-pca/Project.toml | 18 +- tutorials/11-probabilistic-pca/index.qmd | 763 +++---- tutorials/12-gplvm/Manifest.toml | 0 tutorials/12-gplvm/Project.toml | 22 +- tutorials/12-gplvm/index.qmd | 457 ++--- .../13-seasonal-time-series/Manifest.toml | 0 .../13-seasonal-time-series/Project.toml | 14 +- tutorials/13-seasonal-time-series/index.qmd | 689 +++---- tutorials/14-minituring/Manifest.toml | 0 tutorials/14-minituring/Project.toml | 16 +- tutorials/14-minituring/index.qmd | 577 +++--- tutorials/15-gaussian-processes/Manifest.toml | 0 tutorials/15-gaussian-processes/Project.toml | 20 +- tutorials/15-gaussian-processes/index.qmd | 328 ++-- .../docs-00-getting-started/Manifest.toml | 6 +- tutorials/docs-00-getting-started/index.qmd | 7 + .../docs-01-contributing-guide/index.qmd | 52 +- .../index.qmd | 212 +- .../Manifest.toml | 0 .../Project.toml | 4 +- .../hierarchy.png | Bin .../index.qmd | 597 +++--- .../docs-05-for-developers-compiler/index.qmd | 597 +++--- .../Manifest.toml | 0 .../Project.toml | 8 +- .../index.qmd | 631 +++--- .../index.qmd | 647 +++--- .../Manifest.toml | 0 .../Project.toml | 12 +- .../docs-09-using-turing-advanced/index.qmd | 417 ++-- .../Manifest.toml | 0 .../Project.toml | 6 +- .../docs-10-using-turing-autodiff/index.qmd | 121 +- .../Manifest.toml | 0 .../Project.toml | 6 +- .../docs-11-using-turing-dynamichmc/index.qmd | 63 +- .../docs-12-using-turing-guide/Manifest.toml | 0 .../docs-12-using-turing-guide/Project.toml | 12 +- .../docs-12-using-turing-guide/index.qmd | 1265 ++++++------ .../Manifest.toml | 0 .../Project.toml | 10 +- .../index.qmd | 337 ++-- .../Manifest.toml | 0 .../Project.toml | 8 +- .../index.qmd | 139 +- .../Manifest.toml | 0 .../Project.toml | 12 +- .../index.qmd | 385 ++-- .../Manifest.toml | 0 .../Project.toml | 0 .../index.qmd | 349 ++-- 85 files changed, 8015 insertions(+), 7731 deletions(-) mode change 100644 => 100755 tutorials/00-introduction/Manifest.toml mode change 100644 => 100755 tutorials/00-introduction/Project.toml mode change 100644 => 100755 tutorials/00-introduction/index.qmd mode change 100644 => 100755 tutorials/01-gaussian-mixture-model/Manifest.toml mode change 100644 => 100755 tutorials/01-gaussian-mixture-model/Project.toml mode change 100644 => 100755 tutorials/01-gaussian-mixture-model/index.qmd mode change 100644 => 100755 tutorials/02-logistic-regression/Manifest.toml mode change 100644 => 100755 tutorials/02-logistic-regression/Project.toml mode change 100644 => 100755 tutorials/02-logistic-regression/index.qmd mode change 100644 => 100755 tutorials/03-bayesian-neural-network/Manifest.toml mode change 100644 => 100755 tutorials/03-bayesian-neural-network/Project.toml mode change 100644 => 100755 tutorials/03-bayesian-neural-network/index.qmd mode change 100644 => 100755 tutorials/04-hidden-markov-model/Manifest.toml mode change 100644 => 100755 tutorials/04-hidden-markov-model/Project.toml mode change 100644 => 100755 tutorials/04-hidden-markov-model/index.qmd mode change 100644 => 100755 tutorials/05-linear-regression/Manifest.toml mode change 100644 => 100755 tutorials/05-linear-regression/Project.toml mode change 100644 => 100755 tutorials/05-linear-regression/index.qmd mode change 100644 => 100755 tutorials/06-infinite-mixture-model/Manifest.toml mode change 100644 => 100755 tutorials/06-infinite-mixture-model/Project.toml mode change 100644 => 100755 tutorials/06-infinite-mixture-model/index.qmd mode change 100644 => 100755 tutorials/07-poisson-regression/Manifest.toml mode change 100644 => 100755 tutorials/07-poisson-regression/Project.toml mode change 100644 => 100755 tutorials/07-poisson-regression/index.qmd mode change 100644 => 100755 tutorials/08-multinomial-logistic-regression/Manifest.toml mode change 100644 => 100755 tutorials/08-multinomial-logistic-regression/Project.toml mode change 100644 => 100755 tutorials/08-multinomial-logistic-regression/index.qmd mode change 100644 => 100755 tutorials/09-variational-inference/Manifest.toml mode change 100644 => 100755 tutorials/09-variational-inference/Project.toml mode change 100644 => 100755 tutorials/09-variational-inference/index.qmd mode change 100644 => 100755 tutorials/10-bayesian-differential-equations/Manifest.toml mode change 100644 => 100755 tutorials/10-bayesian-differential-equations/Project.toml mode change 100644 => 100755 tutorials/10-bayesian-differential-equations/index.qmd mode change 100644 => 100755 tutorials/11-probabilistic-pca/Manifest.toml mode change 100644 => 100755 tutorials/11-probabilistic-pca/Project.toml mode change 100644 => 100755 tutorials/11-probabilistic-pca/index.qmd mode change 100644 => 100755 tutorials/12-gplvm/Manifest.toml mode change 100644 => 100755 tutorials/12-gplvm/Project.toml mode change 100644 => 100755 tutorials/12-gplvm/index.qmd mode change 100644 => 100755 tutorials/13-seasonal-time-series/Manifest.toml mode change 100644 => 100755 tutorials/13-seasonal-time-series/Project.toml mode change 100644 => 100755 tutorials/13-seasonal-time-series/index.qmd mode change 100644 => 100755 tutorials/14-minituring/Manifest.toml mode change 100644 => 100755 tutorials/14-minituring/Project.toml mode change 100644 => 100755 tutorials/14-minituring/index.qmd mode change 100644 => 100755 tutorials/15-gaussian-processes/Manifest.toml mode change 100644 => 100755 tutorials/15-gaussian-processes/Project.toml mode change 100644 => 100755 tutorials/15-gaussian-processes/index.qmd mode change 100644 => 100755 tutorials/docs-01-contributing-guide/index.qmd mode change 100644 => 100755 tutorials/docs-02-contributing-style-guide/index.qmd mode change 100644 => 100755 tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml mode change 100644 => 100755 tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml mode change 100644 => 100755 tutorials/docs-04-for-developers-abstractmcmc-turing/hierarchy.png mode change 100644 => 100755 tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd mode change 100644 => 100755 tutorials/docs-05-for-developers-compiler/index.qmd mode change 100644 => 100755 tutorials/docs-06-for-developers-interface/Manifest.toml mode change 100644 => 100755 tutorials/docs-06-for-developers-interface/Project.toml mode change 100644 => 100755 tutorials/docs-06-for-developers-interface/index.qmd mode change 100644 => 100755 tutorials/docs-07-for-developers-variational-inference/index.qmd mode change 100644 => 100755 tutorials/docs-09-using-turing-advanced/Manifest.toml mode change 100644 => 100755 tutorials/docs-09-using-turing-advanced/Project.toml mode change 100644 => 100755 tutorials/docs-09-using-turing-advanced/index.qmd mode change 100644 => 100755 tutorials/docs-10-using-turing-autodiff/Manifest.toml mode change 100644 => 100755 tutorials/docs-10-using-turing-autodiff/Project.toml mode change 100644 => 100755 tutorials/docs-10-using-turing-autodiff/index.qmd mode change 100644 => 100755 tutorials/docs-11-using-turing-dynamichmc/Manifest.toml mode change 100644 => 100755 tutorials/docs-11-using-turing-dynamichmc/Project.toml mode change 100644 => 100755 tutorials/docs-11-using-turing-dynamichmc/index.qmd mode change 100644 => 100755 tutorials/docs-12-using-turing-guide/Manifest.toml mode change 100644 => 100755 tutorials/docs-12-using-turing-guide/Project.toml mode change 100644 => 100755 tutorials/docs-12-using-turing-guide/index.qmd mode change 100644 => 100755 tutorials/docs-13-using-turing-performance-tips/Manifest.toml mode change 100644 => 100755 tutorials/docs-13-using-turing-performance-tips/Project.toml mode change 100644 => 100755 tutorials/docs-13-using-turing-performance-tips/index.qmd mode change 100644 => 100755 tutorials/docs-14-using-turing-quick-start/Manifest.toml mode change 100644 => 100755 tutorials/docs-14-using-turing-quick-start/Project.toml mode change 100644 => 100755 tutorials/docs-14-using-turing-quick-start/index.qmd mode change 100644 => 100755 tutorials/docs-15-using-turing-sampler-viz/Manifest.toml mode change 100644 => 100755 tutorials/docs-15-using-turing-sampler-viz/Project.toml mode change 100644 => 100755 tutorials/docs-15-using-turing-sampler-viz/index.qmd mode change 100644 => 100755 tutorials/docs-16-using-turing-external-samplers/Manifest.toml mode change 100644 => 100755 tutorials/docs-16-using-turing-external-samplers/Project.toml mode change 100644 => 100755 tutorials/docs-16-using-turing-external-samplers/index.qmd diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/00-introduction/Project.toml b/tutorials/00-introduction/Project.toml old mode 100644 new mode 100755 index 18de91042..56b39111c --- a/tutorials/00-introduction/Project.toml +++ b/tutorials/00-introduction/Project.toml @@ -1,6 +1,6 @@ -[deps] -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/00-introduction/index.qmd b/tutorials/00-introduction/index.qmd old mode 100644 new mode 100755 index c81294f2c..a47de8412 --- a/tutorials/00-introduction/index.qmd +++ b/tutorials/00-introduction/index.qmd @@ -1,227 +1,234 @@ ---- -title: Introduction to Turing -engine: julia ---- - -### Introduction - -This is the first of a series of tutorials on the universal probabilistic programming language **Turing**. - -Turing is a probabilistic programming system written entirely in Julia. It has an intuitive modelling syntax and supports a wide range of sampling-based inference algorithms. - -Familiarity with Julia is assumed throughout this tutorial. If you are new to Julia, [Learning Julia](https://julialang.org/learning/) is a good starting point. - -For users new to Bayesian machine learning, please consider more thorough introductions to the field such as [Pattern Recognition and Machine Learning](https://www.springer.com/us/book/9780387310732). This tutorial tries to provide an intuition for Bayesian inference and gives a simple example on how to use Turing. Note that this is not a comprehensive introduction to Bayesian machine learning. - -### Coin Flipping Without Turing - -The following example illustrates the effect of updating our beliefs with every piece of new evidence we observe. - -Assume that we are unsure about the probability of heads in a coin flip. To get an intuitive understanding of what "updating our beliefs" is, we will visualize the probability of heads in a coin flip after each observed evidence. - -First, let us load some packages that we need to simulate a coin flip - -```{julia} -using Distributions - -using Random -Random.seed!(12); # Set seed for reproducibility -``` - -and to visualize our results. - -```{julia} -using StatsPlots -``` - -Note that Turing is not loaded here — we do not use it in this example. If you are already familiar with posterior updates, you can proceed to the next step. - -Next, we configure the data generating model. Let us set the true probability that a coin flip turns up heads - -```{julia} -p_true = 0.5; -``` - -and set the number of coin flips we will show our model. - -```{julia} -N = 100; -``` - -We simulate `N` coin flips by drawing N random samples from the Bernoulli distribution with success probability `p_true`. The draws are collected in a variable called `data`: - -```{julia} -data = rand(Bernoulli(p_true), N); -``` - -Here is what the first five coin flips look like: - -```{julia} -data[1:5] -``` - -Next, we specify a prior belief about the distribution of heads and tails in a coin toss. Here we choose a [Beta](https://en.wikipedia.org/wiki/Beta_distribution) distribution as prior distribution for the probability of heads. Before any coin flip is observed, we assume a uniform distribution $\operatorname{U}(0, 1) = \operatorname{Beta}(1, 1)$ of the probability of heads. I.e., every probability is equally likely initially. - -```{julia} -prior_belief = Beta(1, 1); -``` - -With our priors set and our data at hand, we can perform Bayesian inference. - -This is a fairly simple process. We expose one additional coin flip to our model every iteration, such that the first run only sees the first coin flip, while the last iteration sees all the coin flips. In each iteration we update our belief to an updated version of the original Beta distribution that accounts for the new proportion of heads and tails. The update is particularly simple since our prior distribution is a [conjugate prior](https://en.wikipedia.org/wiki/Conjugate_prior). Note that a closed-form expression for the posterior (implemented in the `updated_belief` expression below) is not accessible in general and usually does not exist for more interesting models. - -```{julia} -function updated_belief(prior_belief::Beta, data::AbstractArray{Bool}) - # Count the number of heads and tails. - heads = sum(data) - tails = length(data) - heads - - # Update our prior belief in closed form (this is possible because we use a conjugate prior). - return Beta(prior_belief.α + heads, prior_belief.β + tails) -end - -# Show updated belief for increasing number of observations -@gif for n in 0:N - plot( - updated_belief(prior_belief, data[1:n]); - size=(500, 250), - title="Updated belief after $n observations", - xlabel="probability of heads", - ylabel="", - legend=nothing, - xlim=(0, 1), - fill=0, - α=0.3, - w=3, - ) - vline!([p_true]) -end -``` - -The animation above shows that with increasing evidence our belief about the probability of heads in a coin flip slowly adjusts towards the true value. -The orange line in the animation represents the true probability of seeing heads on a single coin flip, while the mode of the distribution shows what the model believes the probability of a heads is given the evidence it has seen. - -For the mathematically inclined, the $\operatorname{Beta}$ distribution is updated by adding each coin flip to the parameters $\alpha$ and $\beta$ of the distribution. -Initially, the parameters are defined as $\alpha = 1$ and $\beta = 1$. -Over time, with more and more coin flips, $\alpha$ and $\beta$ will be approximately equal to each other as we are equally likely to flip a heads or a tails. - -The mean of the $\operatorname{Beta}(\alpha, \beta)$ distribution is - -$$\operatorname{E}[X] = \dfrac{\alpha}{\alpha+\beta}.$$ - -This implies that the plot of the distribution will become centered around 0.5 for a large enough number of coin flips, as we expect $\alpha \approx \beta$. - -The variance of the $\operatorname{Beta}(\alpha, \beta)$ distribution is - -$$\operatorname{var}[X] = \dfrac{\alpha\beta}{(\alpha + \beta)^2 (\alpha + \beta + 1)}.$$ - -Thus the variance of the distribution will approach 0 with more and more samples, as the denominator will grow faster than will the numerator. -More samples means less variance. -This implies that the distribution will reflect less uncertainty about the probability of receiving a heads and the plot will become more tightly centered around 0.5 for a large enough number of coin flips. - -### Coin Flipping With Turing - -We now move away from the closed-form expression above. -We use **Turing** to specify the same model and to approximate the posterior distribution with samples. -To do so, we first need to load `Turing`. - -```{julia} -using Turing -``` - -Additionally, we load `MCMCChains`, a library for analyzing and visualizing the samples with which we approximate the posterior distribution. - -```{julia} -using MCMCChains -``` - -First, we define the coin-flip model using Turing. - -```{julia} -# Unconditioned coinflip model with `N` observations. -@model function coinflip(; N::Int) - # Our prior belief about the probability of heads in a coin toss. - p ~ Beta(1, 1) - - # Heads or tails of a coin are drawn from `N` independent and identically - # distributed Bernoulli distributions with success rate `p`. - y ~ filldist(Bernoulli(p), N) - - return y -end; -``` - -In the Turing model the prior distribution of the variable `p`, the probability of heads in a coin toss, and the distribution of the observations `y` are specified on the right-hand side of the `~` expressions. -The `@model` macro modifies the body of the Julia function `coinflip` and, e.g., replaces the `~` statements with internal function calls that are used for sampling. - -Here we defined a model that is not conditioned on any specific observations as this allows us to easily obtain samples of both `p` and `y` with - -```{julia} -rand(coinflip(; N)) -``` - -The model can be conditioned on some observations with `|`. -See the [documentation of the `condition` syntax](https://turinglang.github.io/DynamicPPL.jl/stable/api/#Condition-and-decondition) in `DynamicPPL.jl` for more details. -In the conditioned `model` the observations `y` are fixed to `data`. - -```{julia} -coinflip(y::AbstractVector{<:Real}) = coinflip(; N=length(y)) | (; y) - -model = coinflip(data); -``` - -After defining the model, we can approximate the posterior distribution by drawing samples from the distribution. -In this example, we use a [Hamiltonian Monte Carlo](https://en.wikipedia.org/wiki/Hamiltonian_Monte_Carlo) sampler to draw these samples. -Other tutorials give more information on the samplers available in Turing and discuss their use for different models. - -```{julia} -sampler = NUTS(); -``` - -We approximate the posterior distribution with 1000 samples: - -```{julia} -chain = sample(model, sampler, 2_000, progress=false); -``` - -The `sample` function and common keyword arguments are explained more extensively in the documentation of [AbstractMCMC.jl](https://turinglang.github.io/AbstractMCMC.jl/dev/api/). - -After finishing the sampling process, we can visually compare the closed-form posterior distribution with the approximation obtained with Turing. - -```{julia} -histogram(chain) -``` - -Now we can build our plot: - - - -```{julia} -# Visualize a blue density plot of the approximate posterior distribution using HMC (see Chain 1 in the legend). -density(chain; xlim=(0, 1), legend=:best, w=2, c=:blue) - -# Visualize a green density plot of the posterior distribution in closed-form. -plot!( - 0:0.01:1, - pdf.(updated_belief(prior_belief, data), 0:0.01:1); - xlabel="probability of heads", - ylabel="", - title="", - xlim=(0, 1), - label="Closed-form", - fill=0, - α=0.3, - w=3, - c=:lightgreen, -) - -# Visualize the true probability of heads in red. -vline!([p_true]; label="True probability", c=:red) -``` - -As we can see, the samples obtained with Turing closely approximate the true posterior distribution. -Hopefully this tutorial has provided an easy-to-follow, yet informative introduction to Turing's simpler applications. +--- +title: Introduction to Turing +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +### Introduction + +This is the first of a series of tutorials on the universal probabilistic programming language **Turing**. + +Turing is a probabilistic programming system written entirely in Julia. It has an intuitive modelling syntax and supports a wide range of sampling-based inference algorithms. + +Familiarity with Julia is assumed throughout this tutorial. If you are new to Julia, [Learning Julia](https://julialang.org/learning/) is a good starting point. + +For users new to Bayesian machine learning, please consider more thorough introductions to the field such as [Pattern Recognition and Machine Learning](https://www.springer.com/us/book/9780387310732). This tutorial tries to provide an intuition for Bayesian inference and gives a simple example on how to use Turing. Note that this is not a comprehensive introduction to Bayesian machine learning. + +### Coin Flipping Without Turing + +The following example illustrates the effect of updating our beliefs with every piece of new evidence we observe. + +Assume that we are unsure about the probability of heads in a coin flip. To get an intuitive understanding of what "updating our beliefs" is, we will visualize the probability of heads in a coin flip after each observed evidence. + +First, let us load some packages that we need to simulate a coin flip + +```{julia} +using Distributions + +using Random +Random.seed!(12); # Set seed for reproducibility +``` + +and to visualize our results. + +```{julia} +using StatsPlots +``` + +Note that Turing is not loaded here — we do not use it in this example. If you are already familiar with posterior updates, you can proceed to the next step. + +Next, we configure the data generating model. Let us set the true probability that a coin flip turns up heads + +```{julia} +p_true = 0.5; +``` + +and set the number of coin flips we will show our model. + +```{julia} +N = 100; +``` + +We simulate `N` coin flips by drawing N random samples from the Bernoulli distribution with success probability `p_true`. The draws are collected in a variable called `data`: + +```{julia} +data = rand(Bernoulli(p_true), N); +``` + +Here is what the first five coin flips look like: + +```{julia} +data[1:5] +``` + +Next, we specify a prior belief about the distribution of heads and tails in a coin toss. Here we choose a [Beta](https://en.wikipedia.org/wiki/Beta_distribution) distribution as prior distribution for the probability of heads. Before any coin flip is observed, we assume a uniform distribution $\operatorname{U}(0, 1) = \operatorname{Beta}(1, 1)$ of the probability of heads. I.e., every probability is equally likely initially. + +```{julia} +prior_belief = Beta(1, 1); +``` + +With our priors set and our data at hand, we can perform Bayesian inference. + +This is a fairly simple process. We expose one additional coin flip to our model every iteration, such that the first run only sees the first coin flip, while the last iteration sees all the coin flips. In each iteration we update our belief to an updated version of the original Beta distribution that accounts for the new proportion of heads and tails. The update is particularly simple since our prior distribution is a [conjugate prior](https://en.wikipedia.org/wiki/Conjugate_prior). Note that a closed-form expression for the posterior (implemented in the `updated_belief` expression below) is not accessible in general and usually does not exist for more interesting models. + +```{julia} +function updated_belief(prior_belief::Beta, data::AbstractArray{Bool}) + # Count the number of heads and tails. + heads = sum(data) + tails = length(data) - heads + + # Update our prior belief in closed form (this is possible because we use a conjugate prior). + return Beta(prior_belief.α + heads, prior_belief.β + tails) +end + +# Show updated belief for increasing number of observations +@gif for n in 0:N + plot( + updated_belief(prior_belief, data[1:n]); + size=(500, 250), + title="Updated belief after $n observations", + xlabel="probability of heads", + ylabel="", + legend=nothing, + xlim=(0, 1), + fill=0, + α=0.3, + w=3, + ) + vline!([p_true]) +end +``` + +The animation above shows that with increasing evidence our belief about the probability of heads in a coin flip slowly adjusts towards the true value. +The orange line in the animation represents the true probability of seeing heads on a single coin flip, while the mode of the distribution shows what the model believes the probability of a heads is given the evidence it has seen. + +For the mathematically inclined, the $\operatorname{Beta}$ distribution is updated by adding each coin flip to the parameters $\alpha$ and $\beta$ of the distribution. +Initially, the parameters are defined as $\alpha = 1$ and $\beta = 1$. +Over time, with more and more coin flips, $\alpha$ and $\beta$ will be approximately equal to each other as we are equally likely to flip a heads or a tails. + +The mean of the $\operatorname{Beta}(\alpha, \beta)$ distribution is + +$$\operatorname{E}[X] = \dfrac{\alpha}{\alpha+\beta}.$$ + +This implies that the plot of the distribution will become centered around 0.5 for a large enough number of coin flips, as we expect $\alpha \approx \beta$. + +The variance of the $\operatorname{Beta}(\alpha, \beta)$ distribution is + +$$\operatorname{var}[X] = \dfrac{\alpha\beta}{(\alpha + \beta)^2 (\alpha + \beta + 1)}.$$ + +Thus the variance of the distribution will approach 0 with more and more samples, as the denominator will grow faster than will the numerator. +More samples means less variance. +This implies that the distribution will reflect less uncertainty about the probability of receiving a heads and the plot will become more tightly centered around 0.5 for a large enough number of coin flips. + +### Coin Flipping With Turing + +We now move away from the closed-form expression above. +We use **Turing** to specify the same model and to approximate the posterior distribution with samples. +To do so, we first need to load `Turing`. + +```{julia} +using Turing +``` + +Additionally, we load `MCMCChains`, a library for analyzing and visualizing the samples with which we approximate the posterior distribution. + +```{julia} +using MCMCChains +``` + +First, we define the coin-flip model using Turing. + +```{julia} +# Unconditioned coinflip model with `N` observations. +@model function coinflip(; N::Int) + # Our prior belief about the probability of heads in a coin toss. + p ~ Beta(1, 1) + + # Heads or tails of a coin are drawn from `N` independent and identically + # distributed Bernoulli distributions with success rate `p`. + y ~ filldist(Bernoulli(p), N) + + return y +end; +``` + +In the Turing model the prior distribution of the variable `p`, the probability of heads in a coin toss, and the distribution of the observations `y` are specified on the right-hand side of the `~` expressions. +The `@model` macro modifies the body of the Julia function `coinflip` and, e.g., replaces the `~` statements with internal function calls that are used for sampling. + +Here we defined a model that is not conditioned on any specific observations as this allows us to easily obtain samples of both `p` and `y` with + +```{julia} +rand(coinflip(; N)) +``` + +The model can be conditioned on some observations with `|`. +See the [documentation of the `condition` syntax](https://turinglang.github.io/DynamicPPL.jl/stable/api/#Condition-and-decondition) in `DynamicPPL.jl` for more details. +In the conditioned `model` the observations `y` are fixed to `data`. + +```{julia} +coinflip(y::AbstractVector{<:Real}) = coinflip(; N=length(y)) | (; y) + +model = coinflip(data); +``` + +After defining the model, we can approximate the posterior distribution by drawing samples from the distribution. +In this example, we use a [Hamiltonian Monte Carlo](https://en.wikipedia.org/wiki/Hamiltonian_Monte_Carlo) sampler to draw these samples. +Other tutorials give more information on the samplers available in Turing and discuss their use for different models. + +```{julia} +sampler = NUTS(); +``` + +We approximate the posterior distribution with 1000 samples: + +```{julia} +chain = sample(model, sampler, 2_000, progress=false); +``` + +The `sample` function and common keyword arguments are explained more extensively in the documentation of [AbstractMCMC.jl](https://turinglang.github.io/AbstractMCMC.jl/dev/api/). + +After finishing the sampling process, we can visually compare the closed-form posterior distribution with the approximation obtained with Turing. + +```{julia} +histogram(chain) +``` + +Now we can build our plot: + +```{julia} +#| echo: false +@assert isapprox(mean(chain, :p), 0.5; atol=0.1) "Estimated mean of parameter p: $(mean(chain, :p)) - not in [0.4, 0.6]!" +``` + +```{julia} +# Visualize a blue density plot of the approximate posterior distribution using HMC (see Chain 1 in the legend). +density(chain; xlim=(0, 1), legend=:best, w=2, c=:blue) + +# Visualize a green density plot of the posterior distribution in closed-form. +plot!( + 0:0.01:1, + pdf.(updated_belief(prior_belief, data), 0:0.01:1); + xlabel="probability of heads", + ylabel="", + title="", + xlim=(0, 1), + label="Closed-form", + fill=0, + α=0.3, + w=3, + c=:lightgreen, +) + +# Visualize the true probability of heads in red. +vline!([p_true]; label="True probability", c=:red) +``` + +As we can see, the samples obtained with Turing closely approximate the true posterior distribution. +Hopefully this tutorial has provided an easy-to-follow, yet informative introduction to Turing's simpler applications. More advanced usage is demonstrated in other tutorials. \ No newline at end of file diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/01-gaussian-mixture-model/Project.toml b/tutorials/01-gaussian-mixture-model/Project.toml old mode 100644 new mode 100755 index c487e60c5..c9ac8b8bc --- a/tutorials/01-gaussian-mixture-model/Project.toml +++ b/tutorials/01-gaussian-mixture-model/Project.toml @@ -1,7 +1,7 @@ -[deps] -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/01-gaussian-mixture-model/index.qmd b/tutorials/01-gaussian-mixture-model/index.qmd old mode 100644 new mode 100755 index 7b6728544..f6b8fdca4 --- a/tutorials/01-gaussian-mixture-model/index.qmd +++ b/tutorials/01-gaussian-mixture-model/index.qmd @@ -1,197 +1,204 @@ ---- -title: Unsupervised Learning using Bayesian Mixture Models -engine: julia ---- - -The following tutorial illustrates the use of Turing for clustering data using a Bayesian mixture model. -The aim of this task is to infer a latent grouping (hidden structure) from unlabelled data. - -## Synthetic Data - -We generate a synthetic dataset of $N = 60$ two-dimensional points $x_i \in \mathbb{R}^2$ drawn from a Gaussian mixture model. -For simplicity, we use $K = 2$ clusters with - -- equal weights, i.e., we use mixture weights $w = [0.5, 0.5]$, and -- isotropic Gaussian distributions of the points in each cluster. - -More concretely, we use the Gaussian distributions $\mathcal{N}([\mu_k, \mu_k]^\mathsf{T}, I)$ with parameters $\mu_1 = -3.5$ and $\mu_2 = 0.5$. - -```{julia} -using Distributions -using FillArrays -using StatsPlots - -using LinearAlgebra -using Random - -# Set a random seed. -Random.seed!(3) - -# Define Gaussian mixture model. -w = [0.5, 0.5] -μ = [-3.5, 0.5] -mixturemodel = MixtureModel([MvNormal(Fill(μₖ, 2), I) for μₖ in μ], w) - -# We draw the data points. -N = 60 -x = rand(mixturemodel, N); -``` - -The following plot shows the dataset. - -```{julia} -scatter(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") -``` - -## Gaussian Mixture Model in Turing - -We are interested in recovering the grouping from the dataset. -More precisely, we want to infer the mixture weights, the parameters $\mu_1$ and $\mu_2$, and the assignment of each datum to a cluster for the generative Gaussian mixture model. - -In a Bayesian Gaussian mixture model with $K$ components each data point $x_i$ ($i = 1,\ldots,N$) is generated according to the following generative process. -First we draw the model parameters, i.e., in our example we draw parameters $\mu_k$ for the mean of the isotropic normal distributions and the mixture weights $w$ of the $K$ clusters. -We use standard normal distributions as priors for $\mu_k$ and a Dirichlet distribution with parameters $\alpha_1 = \cdots = \alpha_K = 1$ as prior for $w$: -$$ -\begin{aligned} -\mu_k &\sim \mathcal{N}(0, 1) \qquad (k = 1,\ldots,K)\\ -w &\sim \operatorname{Dirichlet}(\alpha_1, \ldots, \alpha_K) -\end{aligned} -$$ -After having constructed all the necessary model parameters, we can generate an observation by first selecting one of the clusters -$$ -z_i \sim \operatorname{Categorical}(w) \qquad (i = 1,\ldots,N), -$$ -and then drawing the datum accordingly, i.e., in our example drawing -$$ -x_i \sim \mathcal{N}([\mu_{z_i}, \mu_{z_i}]^\mathsf{T}, I) \qquad (i=1,\ldots,N). -$$ -For more details on Gaussian mixture models, we refer to Christopher M. Bishop, *Pattern Recognition and Machine Learning*, Section 9. - -We specify the model with Turing. - -```{julia} -using Turing - -@model function gaussian_mixture_model(x) - # Draw the parameters for each of the K=2 clusters from a standard normal distribution. - K = 2 - μ ~ MvNormal(Zeros(K), I) - - # Draw the weights for the K clusters from a Dirichlet distribution with parameters αₖ = 1. - w ~ Dirichlet(K, 1.0) - # Alternatively, one could use a fixed set of weights. - # w = fill(1/K, K) - - # Construct categorical distribution of assignments. - distribution_assignments = Categorical(w) - - # Construct multivariate normal distributions of each cluster. - D, N = size(x) - distribution_clusters = [MvNormal(Fill(μₖ, D), I) for μₖ in μ] - - # Draw assignments for each datum and generate it from the multivariate normal distribution. - k = Vector{Int}(undef, N) - for i in 1:N - k[i] ~ distribution_assignments - x[:, i] ~ distribution_clusters[k[i]] - end - - return k -end - -model = gaussian_mixture_model(x); -``` - -We run a MCMC simulation to obtain an approximation of the posterior distribution of the parameters $\mu$ and $w$ and assignments $k$. -We use a `Gibbs` sampler that combines a [particle Gibbs](https://www.stats.ox.ac.uk/%7Edoucet/andrieu_doucet_holenstein_PMCMC.pdf) sampler for the discrete parameters (assignments $k$) and a Hamiltonion Monte Carlo sampler for the continuous parameters ($\mu$ and $w$). -We generate multiple chains in parallel using multi-threading. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -#| output: false -sampler = Gibbs(PG(100, :k), HMC(0.05, 10, :μ, :w)) -nsamples = 100 -nchains = 3 -chains = sample(model, sampler, MCMCThreads(), nsamples, nchains); -``` - -::: {.callout-warning collapse="true"} -## Sampling With Multiple Threads -The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains -will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) -::: - -```{julia} -#| echo: false -let - # Verify that the output of the chain is as expected. - for i in MCMCChains.chains(chains) - # μ[1] and μ[2] can switch places, so we sort the values first. - chain = Array(chains[:, ["μ[1]", "μ[2]"], i]) - μ_mean = vec(mean(chain; dims=1)) - @assert isapprox(sort(μ_mean), μ; rtol=0.1) "Difference between estimated mean of μ ($(sort(μ_mean))) and data-generating μ ($μ) unexpectedly large!" - end -end -``` - -## Inferred Mixture Model - -After sampling we can visualize the trace and density of the parameters of interest. - -We consider the samples of the location parameters $\mu_1$ and $\mu_2$ for the two clusters. - -```{julia} -plot(chains[["μ[1]", "μ[2]"]]; colordim=:parameter, legend=true) -``` - -It can happen that the modes of $\mu_1$ and $\mu_2$ switch between chains. -For more information see the [Stan documentation](https://mc-stan.org/users/documentation/case-studies/identifying_mixture_models.html) for potential solutions. - -We also inspect the samples of the mixture weights $w$. - -```{julia} -plot(chains[["w[1]", "w[2]"]]; colordim=:parameter, legend=true) -``` - -In the following, we just use the first chain to ensure the validity of our inference. - -```{julia} -chain = chains[:, :, 1]; -``` - -As the distributions of the samples for the parameters $\mu_1$, $\mu_2$, $w_1$, and $w_2$ are unimodal, we can safely visualize the density region of our model using the average values. - -```{julia} -# Model with mean of samples as parameters. -μ_mean = [mean(chain, "μ[$i]") for i in 1:2] -w_mean = [mean(chain, "w[$i]") for i in 1:2] -mixturemodel_mean = MixtureModel([MvNormal(Fill(μₖ, 2), I) for μₖ in μ_mean], w_mean) - -contour( - range(-7.5, 3; length=1_000), - range(-6.5, 3; length=1_000), - (x, y) -> logpdf(mixturemodel_mean, [x, y]); - widen=false, -) -scatter!(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") -``` - -## Inferred Assignments - -Finally, we can inspect the assignments of the data points inferred using Turing. -As we can see, the dataset is partitioned into two distinct groups. - -```{julia} -assignments = [mean(chain, "k[$i]") for i in 1:N] -scatter( - x[1, :], - x[2, :]; - legend=false, - title="Assignments on Synthetic Dataset", - zcolor=assignments, -) -``` +--- +title: Unsupervised Learning using Bayesian Mixture Models +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +The following tutorial illustrates the use of Turing for clustering data using a Bayesian mixture model. +The aim of this task is to infer a latent grouping (hidden structure) from unlabelled data. + +## Synthetic Data + +We generate a synthetic dataset of $N = 60$ two-dimensional points $x_i \in \mathbb{R}^2$ drawn from a Gaussian mixture model. +For simplicity, we use $K = 2$ clusters with + +- equal weights, i.e., we use mixture weights $w = [0.5, 0.5]$, and +- isotropic Gaussian distributions of the points in each cluster. + +More concretely, we use the Gaussian distributions $\mathcal{N}([\mu_k, \mu_k]^\mathsf{T}, I)$ with parameters $\mu_1 = -3.5$ and $\mu_2 = 0.5$. + +```{julia} +using Distributions +using FillArrays +using StatsPlots + +using LinearAlgebra +using Random + +# Set a random seed. +Random.seed!(3) + +# Define Gaussian mixture model. +w = [0.5, 0.5] +μ = [-3.5, 0.5] +mixturemodel = MixtureModel([MvNormal(Fill(μₖ, 2), I) for μₖ in μ], w) + +# We draw the data points. +N = 60 +x = rand(mixturemodel, N); +``` + +The following plot shows the dataset. + +```{julia} +scatter(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") +``` + +## Gaussian Mixture Model in Turing + +We are interested in recovering the grouping from the dataset. +More precisely, we want to infer the mixture weights, the parameters $\mu_1$ and $\mu_2$, and the assignment of each datum to a cluster for the generative Gaussian mixture model. + +In a Bayesian Gaussian mixture model with $K$ components each data point $x_i$ ($i = 1,\ldots,N$) is generated according to the following generative process. +First we draw the model parameters, i.e., in our example we draw parameters $\mu_k$ for the mean of the isotropic normal distributions and the mixture weights $w$ of the $K$ clusters. +We use standard normal distributions as priors for $\mu_k$ and a Dirichlet distribution with parameters $\alpha_1 = \cdots = \alpha_K = 1$ as prior for $w$: +$$ +\begin{aligned} +\mu_k &\sim \mathcal{N}(0, 1) \qquad (k = 1,\ldots,K)\\ +w &\sim \operatorname{Dirichlet}(\alpha_1, \ldots, \alpha_K) +\end{aligned} +$$ +After having constructed all the necessary model parameters, we can generate an observation by first selecting one of the clusters +$$ +z_i \sim \operatorname{Categorical}(w) \qquad (i = 1,\ldots,N), +$$ +and then drawing the datum accordingly, i.e., in our example drawing +$$ +x_i \sim \mathcal{N}([\mu_{z_i}, \mu_{z_i}]^\mathsf{T}, I) \qquad (i=1,\ldots,N). +$$ +For more details on Gaussian mixture models, we refer to Christopher M. Bishop, *Pattern Recognition and Machine Learning*, Section 9. + +We specify the model with Turing. + +```{julia} +using Turing + +@model function gaussian_mixture_model(x) + # Draw the parameters for each of the K=2 clusters from a standard normal distribution. + K = 2 + μ ~ MvNormal(Zeros(K), I) + + # Draw the weights for the K clusters from a Dirichlet distribution with parameters αₖ = 1. + w ~ Dirichlet(K, 1.0) + # Alternatively, one could use a fixed set of weights. + # w = fill(1/K, K) + + # Construct categorical distribution of assignments. + distribution_assignments = Categorical(w) + + # Construct multivariate normal distributions of each cluster. + D, N = size(x) + distribution_clusters = [MvNormal(Fill(μₖ, D), I) for μₖ in μ] + + # Draw assignments for each datum and generate it from the multivariate normal distribution. + k = Vector{Int}(undef, N) + for i in 1:N + k[i] ~ distribution_assignments + x[:, i] ~ distribution_clusters[k[i]] + end + + return k +end + +model = gaussian_mixture_model(x); +``` + +We run a MCMC simulation to obtain an approximation of the posterior distribution of the parameters $\mu$ and $w$ and assignments $k$. +We use a `Gibbs` sampler that combines a [particle Gibbs](https://www.stats.ox.ac.uk/%7Edoucet/andrieu_doucet_holenstein_PMCMC.pdf) sampler for the discrete parameters (assignments $k$) and a Hamiltonion Monte Carlo sampler for the continuous parameters ($\mu$ and $w$). +We generate multiple chains in parallel using multi-threading. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +#| output: false +sampler = Gibbs(PG(100, :k), HMC(0.05, 10, :μ, :w)) +nsamples = 100 +nchains = 3 +chains = sample(model, sampler, MCMCThreads(), nsamples, nchains); +``` + +::: {.callout-warning collapse="true"} +## Sampling With Multiple Threads +The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains +will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) +::: + +```{julia} +#| echo: false +let + # Verify that the output of the chain is as expected. + for i in MCMCChains.chains(chains) + # μ[1] and μ[2] can switch places, so we sort the values first. + chain = Array(chains[:, ["μ[1]", "μ[2]"], i]) + μ_mean = vec(mean(chain; dims=1)) + @assert isapprox(sort(μ_mean), μ; rtol=0.1) "Difference between estimated mean of μ ($(sort(μ_mean))) and data-generating μ ($μ) unexpectedly large!" + end +end +``` + +## Inferred Mixture Model + +After sampling we can visualize the trace and density of the parameters of interest. + +We consider the samples of the location parameters $\mu_1$ and $\mu_2$ for the two clusters. + +```{julia} +plot(chains[["μ[1]", "μ[2]"]]; colordim=:parameter, legend=true) +``` + +It can happen that the modes of $\mu_1$ and $\mu_2$ switch between chains. +For more information see the [Stan documentation](https://mc-stan.org/users/documentation/case-studies/identifying_mixture_models.html) for potential solutions. + +We also inspect the samples of the mixture weights $w$. + +```{julia} +plot(chains[["w[1]", "w[2]"]]; colordim=:parameter, legend=true) +``` + +In the following, we just use the first chain to ensure the validity of our inference. + +```{julia} +chain = chains[:, :, 1]; +``` + +As the distributions of the samples for the parameters $\mu_1$, $\mu_2$, $w_1$, and $w_2$ are unimodal, we can safely visualize the density region of our model using the average values. + +```{julia} +# Model with mean of samples as parameters. +μ_mean = [mean(chain, "μ[$i]") for i in 1:2] +w_mean = [mean(chain, "w[$i]") for i in 1:2] +mixturemodel_mean = MixtureModel([MvNormal(Fill(μₖ, 2), I) for μₖ in μ_mean], w_mean) + +contour( + range(-7.5, 3; length=1_000), + range(-6.5, 3; length=1_000), + (x, y) -> logpdf(mixturemodel_mean, [x, y]); + widen=false, +) +scatter!(x[1, :], x[2, :]; legend=false, title="Synthetic Dataset") +``` + +## Inferred Assignments + +Finally, we can inspect the assignments of the data points inferred using Turing. +As we can see, the dataset is partitioned into two distinct groups. + +```{julia} +assignments = [mean(chain, "k[$i]") for i in 1:N] +scatter( + x[1, :], + x[2, :]; + legend=false, + title="Assignments on Synthetic Dataset", + zcolor=assignments, +) +``` diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml old mode 100644 new mode 100755 index b0c9eae85..2ef3b12a2 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -1250,9 +1250,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" +git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.16" +version = "0.9.17" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1274,9 +1274,9 @@ version = "1.0.2" [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" +git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.1" +version = "0.10.2" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" diff --git a/tutorials/02-logistic-regression/Project.toml b/tutorials/02-logistic-regression/Project.toml old mode 100644 new mode 100755 index 0d3a4f9d7..8f55d5358 --- a/tutorials/02-logistic-regression/Project.toml +++ b/tutorials/02-logistic-regression/Project.toml @@ -1,10 +1,10 @@ -[deps] -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/02-logistic-regression/index.qmd b/tutorials/02-logistic-regression/index.qmd old mode 100644 new mode 100755 index 0c1e8d4de..9f6f5f020 --- a/tutorials/02-logistic-regression/index.qmd +++ b/tutorials/02-logistic-regression/index.qmd @@ -1,255 +1,274 @@ ---- -title: Bayesian Logistic Regression -engine: julia ---- - -[Bayesian logistic regression](https://en.wikipedia.org/wiki/Logistic_regression#Bayesian) is the Bayesian counterpart to a common tool in machine learning, logistic regression. -The goal of logistic regression is to predict a one or a zero for a given training item. -An example might be predicting whether someone is sick or ill given their symptoms and personal information. - -In our example, we'll be working to predict whether someone is likely to default with a synthetic dataset found in the `RDatasets` package. This dataset, `Defaults`, comes from R's [ISLR](https://cran.r-project.org/web/packages/ISLR/index.html) package and contains information on borrowers. - -To start, let's import all the libraries we'll need. - -```{julia} -# Import Turing and Distributions. -using Turing, Distributions - -# Import RDatasets. -using RDatasets - -# Import MCMCChains, Plots, and StatsPlots for visualizations and diagnostics. -using MCMCChains, Plots, StatsPlots - -# We need a logistic function, which is provided by StatsFuns. -using StatsFuns: logistic - -# Functionality for splitting and normalizing the data -using MLDataUtils: shuffleobs, stratifiedobs, rescale! - -# Set a seed for reproducibility. -using Random -Random.seed!(0); -``` - -## Data Cleaning & Set Up - -Now we're going to import our dataset. The first six rows of the dataset are shown below so you can get a good feel for what kind of data we have. - -```{julia} -# Import the "Default" dataset. -data = RDatasets.dataset("ISLR", "Default"); - -# Show the first six rows of the dataset. -first(data, 6) -``` - -Most machine learning processes require some effort to tidy up the data, and this is no different. We need to convert the `Default` and `Student` columns, which say "Yes" or "No" into 1s and 0s. Afterwards, we'll get rid of the old words-based columns. - -```{julia} -# Convert "Default" and "Student" to numeric values. -data[!, :DefaultNum] = [r.Default == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] -data[!, :StudentNum] = [r.Student == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] - -# Delete the old columns which say "Yes" and "No". -select!(data, Not([:Default, :Student])) - -# Show the first six rows of our edited dataset. -first(data, 6) -``` - -After we've done that tidying, it's time to split our dataset into training and testing sets, and separate the labels from the data. We separate our data into two halves, `train` and `test`. You can use a higher percentage of splitting (or a lower one) by modifying the `at = 0.05` argument. We have highlighted the use of only a 5% sample to show the power of Bayesian inference with small sample sizes. - -We must rescale our variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. To do this we will leverage `MLDataUtils`, which also lets us effortlessly shuffle our observations and perform a stratified split to get a representative test set. - -```{julia} -function split_data(df, target; at=0.70) - shuffled = shuffleobs(df) - return trainset, testset = stratifiedobs(row -> row[target], shuffled; p=at) -end - -features = [:StudentNum, :Balance, :Income] -numerics = [:Balance, :Income] -target = :DefaultNum - -trainset, testset = split_data(data, target; at=0.05) -for feature in numerics - μ, σ = rescale!(trainset[!, feature]; obsdim=1) - rescale!(testset[!, feature], μ, σ; obsdim=1) -end - -# Turing requires data in matrix form, not dataframe -train = Matrix(trainset[:, features]) -test = Matrix(testset[:, features]) -train_label = trainset[:, target] -test_label = testset[:, target]; -``` - -## Model Declaration - -Finally, we can define our model. - -`logistic_regression` takes four arguments: - - - `x` is our set of independent variables; - - `y` is the element we want to predict; - - `n` is the number of observations we have; and - - `σ` is the standard deviation we want to assume for our priors. - -Within the model, we create four coefficients (`intercept`, `student`, `balance`, and `income`) and assign a prior of normally distributed with means of zero and standard deviations of `σ`. We want to find values of these four coefficients to predict any given `y`. - -The `for` block creates a variable `v` which is the logistic function. We then observe the likelihood of calculating `v` given the actual label, `y[i]`. - -```{julia} -# Bayesian logistic regression (LR) -@model function logistic_regression(x, y, n, σ) - intercept ~ Normal(0, σ) - - student ~ Normal(0, σ) - balance ~ Normal(0, σ) - income ~ Normal(0, σ) - - for i in 1:n - v = logistic(intercept + student * x[i, 1] + balance * x[i, 2] + income * x[i, 3]) - y[i] ~ Bernoulli(v) - end -end; -``` - -## Sampling - -Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -# Retrieve the number of observations. -n, _ = size(train) - -# Sample using NUTS. -m = logistic_regression(train, train_label, n, 1) -chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) -``` - -```{julia} -#| echo: false -let - mean_params = mean(chain) - @assert mean_params[:student, :mean] < 0.1 - @assert mean_params[:balance, :mean] > 1 -end -``` - -Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. - -```{julia} -plot(chain) -``` - -```{julia} -#| echo: false -let - mean_params = mapreduce(hcat, mean(chain; append_chains=false)) do df - return df[:, :mean] - end - for i in (2, 3) - @assert mean_params[:, i] != mean_params[:, 1] - @assert isapprox(mean_params[:, i], mean_params[:, 1]; rtol=5e-2) - end -end -``` - -Looks good! - -We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our logistic regression. - -```{julia} -# The labels to use. -l = [:student, :balance, :income] - -# Use the corner function. Requires StatsPlots and MCMCChains. -corner(chain, l) -``` - -Fortunately the corner plot appears to demonstrate unimodal distributions for each of our parameters, so it should be straightforward to take the means of each parameter's sampled values to estimate our model to make predictions. - -## Making Predictions - -How do we test how well the model actually predicts whether someone is likely to default? We need to build a prediction function that takes the `test` object we made earlier and runs it through the average parameter calculated during sampling. - -The `prediction` function below takes a `Matrix` and a `Chain` object. It takes the mean of each parameter's sampled values and re-runs the logistic function using those mean values for every element in the test set. - -```{julia} -function prediction(x::Matrix, chain, threshold) - # Pull the means from each parameter's sampled values in the chain. - intercept = mean(chain[:intercept]) - student = mean(chain[:student]) - balance = mean(chain[:balance]) - income = mean(chain[:income]) - - # Retrieve the number of rows. - n, _ = size(x) - - # Generate a vector to store our predictions. - v = Vector{Float64}(undef, n) - - # Calculate the logistic function for each element in the test set. - for i in 1:n - num = logistic( - intercept .+ student * x[i, 1] + balance * x[i, 2] + income * x[i, 3] - ) - if num >= threshold - v[i] = 1 - else - v[i] = 0 - end - end - return v -end; -``` - -Let's see how we did! We run the test matrix through the prediction function, and compute the [mean squared error](https://en.wikipedia.org/wiki/Mean_squared_error) (MSE) for our prediction. The `threshold` variable sets the sensitivity of the predictions. For example, a threshold of 0.07 will predict a defualt value of 1 for any predicted value greater than 0.07 and no default if it is less than 0.07. - -```{julia} -# Set the prediction threshold. -threshold = 0.07 - -# Make the predictions. -predictions = prediction(test, chain, threshold) - -# Calculate MSE for our test set. -loss = sum((predictions - test_label) .^ 2) / length(test_label) -``` - -Perhaps more important is to see what percentage of defaults we correctly predicted. The code below simply counts defaults and predictions and presents the results. - -```{julia} -defaults = sum(test_label) -not_defaults = length(test_label) - defaults - -predicted_defaults = sum(test_label .== predictions .== 1) -predicted_not_defaults = sum(test_label .== predictions .== 0) - -println("Defaults: $defaults - Predictions: $predicted_defaults - Percentage defaults correct $(predicted_defaults/defaults)") - -println("Not defaults: $not_defaults - Predictions: $predicted_not_defaults - Percentage non-defaults correct $(predicted_not_defaults/not_defaults)") -``` - -```{julia} -#| echo: false -let - percentage_correct = predicted_defaults / defaults - @assert 0.6 < percentage_correct -end -``` - -The above shows that with a threshold of 0.07, we correctly predict a respectable portion of the defaults, and correctly identify most non-defaults. This is fairly sensitive to a choice of threshold, and you may wish to experiment with it. - +--- +title: Bayesian Logistic Regression +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +[Bayesian logistic regression](https://en.wikipedia.org/wiki/Logistic_regression#Bayesian) is the Bayesian counterpart to a common tool in machine learning, logistic regression. +The goal of logistic regression is to predict a one or a zero for a given training item. +An example might be predicting whether someone is sick or ill given their symptoms and personal information. + +In our example, we'll be working to predict whether someone is likely to default with a synthetic dataset found in the `RDatasets` package. This dataset, `Defaults`, comes from R's [ISLR](https://cran.r-project.org/web/packages/ISLR/index.html) package and contains information on borrowers. + +To start, let's import all the libraries we'll need. + +```{julia} +# Import Turing and Distributions. +using Turing, Distributions + +# Import RDatasets. +using RDatasets + +# Import MCMCChains, Plots, and StatsPlots for visualizations and diagnostics. +using MCMCChains, Plots, StatsPlots + +# We need a logistic function, which is provided by StatsFuns. +using StatsFuns: logistic + +# Functionality for splitting and normalizing the data +using MLDataUtils: shuffleobs, stratifiedobs, rescale! + +# Set a seed for reproducibility. +using Random +Random.seed!(0); +``` + +## Data Cleaning & Set Up + +Now we're going to import our dataset. The first six rows of the dataset are shown below so you can get a good feel for what kind of data we have. + +```{julia} +# Import the "Default" dataset. +data = RDatasets.dataset("ISLR", "Default"); + +# Show the first six rows of the dataset. +first(data, 6) +``` + +Most machine learning processes require some effort to tidy up the data, and this is no different. We need to convert the `Default` and `Student` columns, which say "Yes" or "No" into 1s and 0s. Afterwards, we'll get rid of the old words-based columns. + +```{julia} +# Convert "Default" and "Student" to numeric values. +data[!, :DefaultNum] = [r.Default == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] +data[!, :StudentNum] = [r.Student == "Yes" ? 1.0 : 0.0 for r in eachrow(data)] + +# Delete the old columns which say "Yes" and "No". +select!(data, Not([:Default, :Student])) + +# Show the first six rows of our edited dataset. +first(data, 6) +``` + +After we've done that tidying, it's time to split our dataset into training and testing sets, and separate the labels from the data. We separate our data into two halves, `train` and `test`. You can use a higher percentage of splitting (or a lower one) by modifying the `at = 0.05` argument. We have highlighted the use of only a 5% sample to show the power of Bayesian inference with small sample sizes. + +We must rescale our variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. To do this we will leverage `MLDataUtils`, which also lets us effortlessly shuffle our observations and perform a stratified split to get a representative test set. + +```{julia} +function split_data(df, target; at=0.70) + shuffled = shuffleobs(df) + return trainset, testset = stratifiedobs(row -> row[target], shuffled; p=at) +end + +features = [:StudentNum, :Balance, :Income] +numerics = [:Balance, :Income] +target = :DefaultNum + +trainset, testset = split_data(data, target; at=0.05) +for feature in numerics + μ, σ = rescale!(trainset[!, feature]; obsdim=1) + rescale!(testset[!, feature], μ, σ; obsdim=1) +end + +# Turing requires data in matrix form, not dataframe +train = Matrix(trainset[:, features]) +test = Matrix(testset[:, features]) +train_label = trainset[:, target] +test_label = testset[:, target]; +``` + +## Model Declaration + +Finally, we can define our model. + +`logistic_regression` takes four arguments: + + - `x` is our set of independent variables; + - `y` is the element we want to predict; + - `n` is the number of observations we have; and + - `σ` is the standard deviation we want to assume for our priors. + +Within the model, we create four coefficients (`intercept`, `student`, `balance`, and `income`) and assign a prior of normally distributed with means of zero and standard deviations of `σ`. We want to find values of these four coefficients to predict any given `y`. + +The `for` block creates a variable `v` which is the logistic function. We then observe the likelihood of calculating `v` given the actual label, `y[i]`. + +```{julia} +# Bayesian logistic regression (LR) +@model function logistic_regression(x, y, n, σ) + intercept ~ Normal(0, σ) + + student ~ Normal(0, σ) + balance ~ Normal(0, σ) + income ~ Normal(0, σ) + + for i in 1:n + v = logistic(intercept + student * x[i, 1] + balance * x[i, 2] + income * x[i, 3]) + y[i] ~ Bernoulli(v) + end +end; +``` + +## Sampling + +Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +#| output: false +# Retrieve the number of observations. +n, _ = size(train) + +# Sample using NUTS. +m = logistic_regression(train, train_label, n, 1) +chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) +``` + +```{julia} +#| echo: false +chain +``` + +::: {.callout-warning collapse="true"} +## Sampling With Multiple Threads +The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains +will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) +::: + +```{julia} +#| echo: false +let + mean_params = mean(chain) + @assert mean_params[:student, :mean] < 0.1 + @assert mean_params[:balance, :mean] > 1 +end +``` + +Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. + +```{julia} +plot(chain) +``` + +```{julia} +#| echo: false +let + mean_params = mapreduce(hcat, mean(chain; append_chains=false)) do df + return df[:, :mean] + end + for i in (2, 3) + @assert mean_params[:, i] != mean_params[:, 1] + @assert isapprox(mean_params[:, i], mean_params[:, 1]; rtol=5e-2) + end +end +``` + +Looks good! + +We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our logistic regression. + +```{julia} +# The labels to use. +l = [:student, :balance, :income] + +# Use the corner function. Requires StatsPlots and MCMCChains. +corner(chain, l) +``` + +Fortunately the corner plot appears to demonstrate unimodal distributions for each of our parameters, so it should be straightforward to take the means of each parameter's sampled values to estimate our model to make predictions. + +## Making Predictions + +How do we test how well the model actually predicts whether someone is likely to default? We need to build a prediction function that takes the `test` object we made earlier and runs it through the average parameter calculated during sampling. + +The `prediction` function below takes a `Matrix` and a `Chain` object. It takes the mean of each parameter's sampled values and re-runs the logistic function using those mean values for every element in the test set. + +```{julia} +function prediction(x::Matrix, chain, threshold) + # Pull the means from each parameter's sampled values in the chain. + intercept = mean(chain[:intercept]) + student = mean(chain[:student]) + balance = mean(chain[:balance]) + income = mean(chain[:income]) + + # Retrieve the number of rows. + n, _ = size(x) + + # Generate a vector to store our predictions. + v = Vector{Float64}(undef, n) + + # Calculate the logistic function for each element in the test set. + for i in 1:n + num = logistic( + intercept .+ student * x[i, 1] + balance * x[i, 2] + income * x[i, 3] + ) + if num >= threshold + v[i] = 1 + else + v[i] = 0 + end + end + return v +end; +``` + +Let's see how we did! We run the test matrix through the prediction function, and compute the [mean squared error](https://en.wikipedia.org/wiki/Mean_squared_error) (MSE) for our prediction. The `threshold` variable sets the sensitivity of the predictions. For example, a threshold of 0.07 will predict a defualt value of 1 for any predicted value greater than 0.07 and no default if it is less than 0.07. + +```{julia} +# Set the prediction threshold. +threshold = 0.07 + +# Make the predictions. +predictions = prediction(test, chain, threshold) + +# Calculate MSE for our test set. +loss = sum((predictions - test_label) .^ 2) / length(test_label) +``` + +Perhaps more important is to see what percentage of defaults we correctly predicted. The code below simply counts defaults and predictions and presents the results. + +```{julia} +defaults = sum(test_label) +not_defaults = length(test_label) - defaults + +predicted_defaults = sum(test_label .== predictions .== 1) +predicted_not_defaults = sum(test_label .== predictions .== 0) + +println("Defaults: $defaults + Predictions: $predicted_defaults + Percentage defaults correct $(predicted_defaults/defaults)") + +println("Not defaults: $not_defaults + Predictions: $predicted_not_defaults + Percentage non-defaults correct $(predicted_not_defaults/not_defaults)") +``` + +```{julia} +#| echo: false +let + percentage_correct = predicted_defaults / defaults + @assert 0.6 < percentage_correct +end +``` + +The above shows that with a threshold of 0.07, we correctly predict a respectable portion of the defaults, and correctly identify most non-defaults. This is fairly sensitive to a choice of threshold, and you may wish to experiment with it. + This tutorial has demonstrated how to use Turing to perform Bayesian logistic regression. \ No newline at end of file diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/03-bayesian-neural-network/Project.toml b/tutorials/03-bayesian-neural-network/Project.toml old mode 100644 new mode 100755 index afb65b422..799aa0e63 --- a/tutorials/03-bayesian-neural-network/Project.toml +++ b/tutorials/03-bayesian-neural-network/Project.toml @@ -1,8 +1,8 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/03-bayesian-neural-network/index.qmd b/tutorials/03-bayesian-neural-network/index.qmd old mode 100644 new mode 100755 index e8a1c8216..96da50272 --- a/tutorials/03-bayesian-neural-network/index.qmd +++ b/tutorials/03-bayesian-neural-network/index.qmd @@ -1,197 +1,201 @@ ---- -title: Bayesian Neural Networks -engine: julia ---- - -In this tutorial, we demonstrate how one can implement a Bayesian Neural Network using a combination of Turing and [Flux](https://github.com/FluxML/Flux.jl), a suite of machine learning tools. We will use Flux to specify the neural network's layers and Turing to implement the probabilistic inference, with the goal of implementing a classification algorithm. - -We will begin with importing the relevant libraries. - -```{julia} -using Turing -using FillArrays -using Flux -using Plots -using ReverseDiff - -using LinearAlgebra -using Random - -# Use reverse_diff due to the number of parameters in neural networks. -Turing.setadbackend(:reversediff) -``` - -Our goal here is to use a Bayesian neural network to classify points in an artificial dataset. -The code below generates data points arranged in a box-like pattern and displays a graph of the dataset we will be working with. - -```{julia} -# Number of points to generate. -N = 80 -M = round(Int, N / 4) -Random.seed!(1234) - -# Generate artificial data. -x1s = rand(M) * 4.5; -x2s = rand(M) * 4.5; -xt1s = Array([[x1s[i] + 0.5; x2s[i] + 0.5] for i in 1:M]) -x1s = rand(M) * 4.5; -x2s = rand(M) * 4.5; -append!(xt1s, Array([[x1s[i] - 5; x2s[i] - 5] for i in 1:M])) - -x1s = rand(M) * 4.5; -x2s = rand(M) * 4.5; -xt0s = Array([[x1s[i] + 0.5; x2s[i] - 5] for i in 1:M]) -x1s = rand(M) * 4.5; -x2s = rand(M) * 4.5; -append!(xt0s, Array([[x1s[i] - 5; x2s[i] + 0.5] for i in 1:M])) - -# Store all the data for later. -xs = [xt1s; xt0s] -ts = [ones(2 * M); zeros(2 * M)] - -# Plot data points. -function plot_data() - x1 = map(e -> e[1], xt1s) - y1 = map(e -> e[2], xt1s) - x2 = map(e -> e[1], xt0s) - y2 = map(e -> e[2], xt0s) - - Plots.scatter(x1, y1; color="red", clim=(0, 1)) - return Plots.scatter!(x2, y2; color="blue", clim=(0, 1)) -end - -plot_data() -``` - -## Building a Neural Network - -The next step is to define a [feedforward neural network](https://en.wikipedia.org/wiki/Feedforward_neural_network) where we express our parameters as distributions, and not single points as with traditional neural networks. -For this we will use `Dense` to define liner layers and compose them via `Chain`, both are neural network primitives from Flux. -The network `nn_initial` we created has two hidden layers with `tanh` activations and one output layer with sigmoid (`σ`) activation, as shown below. - -![](https://user-images.githubusercontent.com/422990/47970321-bd172080-e038-11e8-9c6d-6c2bd790bd8a.png) - -The `nn_initial` is an instance that acts as a function and can take data as inputs and output predictions. -We will define distributions on the neural network parameters and use `destructure` from Flux to extract the parameters as `parameters_initial`. -The function `destructure` also returns another function `reconstruct` that can take (new) parameters in and return us a neural network instance whose architecture is the same as `nn_initial` but with updated parameters. - -```{julia} -# Construct a neural network using Flux -nn_initial = Chain(Dense(2, 3, tanh), Dense(3, 2, tanh), Dense(2, 1, σ)) - -# Extract weights and a helper function to reconstruct NN from weights -parameters_initial, reconstruct = Flux.destructure(nn_initial) - -length(parameters_initial) # number of paraemters in NN -``` - -The probabilistic model specification below creates a `parameters` variable, which has IID normal variables. The `parameters` vector represents all parameters of our neural net (weights and biases). - -```{julia} -@model function bayes_nn(xs, ts, nparameters, reconstruct; alpha=0.09) - # Create the weight and bias vector. - parameters ~ MvNormal(Zeros(nparameters), I / alpha) - - # Construct NN from parameters - nn = reconstruct(parameters) - # Forward NN to make predictions - preds = nn(xs) - - # Observe each prediction. - for i in 1:length(ts) - ts[i] ~ Bernoulli(preds[i]) - end -end; -``` - -Inference can now be performed by calling `sample`. We use the `NUTS` Hamiltonian Monte Carlo sampler here. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -# Perform inference. -N = 5000 -ch = sample(bayes_nn(hcat(xs...), ts, length(parameters_initial), reconstruct), NUTS(), N); -``` - -Now we extract the parameter samples from the sampled chain as `theta` (this is of size `5000 x 20` where `5000` is the number of iterations and `20` is the number of parameters). -We'll use these primarily to determine how good our model's classifier is. - -```{julia} -# Extract all weight and bias parameters. -theta = MCMCChains.group(ch, :parameters).value; -``` - -## Prediction Visualization - -We can use [MAP estimation](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) to classify our population by using the set of weights that provided the highest log posterior. - -```{julia} -# A helper to create NN from weights `theta` and run it through data `x` -nn_forward(x, theta) = reconstruct(theta)(x) - -# Plot the data we have. -plot_data() - -# Find the index that provided the highest log posterior in the chain. -_, i = findmax(ch[:lp]) - -# Extract the max row value from i. -i = i.I[1] - -# Plot the posterior distribution with a contour plot -x1_range = collect(range(-6; stop=6, length=25)) -x2_range = collect(range(-6; stop=6, length=25)) -Z = [nn_forward([x1, x2], theta[i, :])[1] for x1 in x1_range, x2 in x2_range] -contour!(x1_range, x2_range, Z) -``` - -The contour plot above shows that the MAP method is not too bad at classifying our data. - -Now we can visualize our predictions. - -$$ -p(\tilde{x} | X, \alpha) = \int_{\theta} p(\tilde{x} | \theta) p(\theta | X, \alpha) \approx \sum_{\theta \sim p(\theta | X, \alpha)}f_{\theta}(\tilde{x}) -$$ - -The `nn_predict` function takes the average predicted value from a network parameterized by weights drawn from the MCMC chain. - -```{julia} -# Return the average predicted value across -# multiple weights. -function nn_predict(x, theta, num) - return mean([nn_forward(x, theta[i, :])[1] for i in 1:10:num]) -end; -``` - -Next, we use the `nn_predict` function to predict the value at a sample of points where the `x1` and `x2` coordinates range between -6 and 6. As we can see below, we still have a satisfactory fit to our data, and more importantly, we can also see where the neural network is uncertain about its predictions much easier---those regions between cluster boundaries. - -```{julia} -# Plot the average prediction. -plot_data() - -n_end = 1500 -x1_range = collect(range(-6; stop=6, length=25)) -x2_range = collect(range(-6; stop=6, length=25)) -Z = [nn_predict([x1, x2], theta, n_end)[1] for x1 in x1_range, x2 in x2_range] -contour!(x1_range, x2_range, Z) -``` - -Suppose we are interested in how the predictive power of our Bayesian neural network evolved between samples. In that case, the following graph displays an animation of the contour plot generated from the network weights in samples 1 to 1,000. - - -```{julia} -# Number of iterations to plot. -n_end = 500 - -anim = @gif for i in 1:n_end - plot_data() - Z = [nn_forward([x1, x2], theta[i, :])[1] for x1 in x1_range, x2 in x2_range] - contour!(x1_range, x2_range, Z; title="Iteration $i", clim=(0, 1)) -end every 5 -``` - +--- +title: Bayesian Neural Networks +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In this tutorial, we demonstrate how one can implement a Bayesian Neural Network using a combination of Turing and [Flux](https://github.com/FluxML/Flux.jl), a suite of machine learning tools. We will use Flux to specify the neural network's layers and Turing to implement the probabilistic inference, with the goal of implementing a classification algorithm. + +We will begin with importing the relevant libraries. + +```{julia} +using Turing +using FillArrays +using Flux +using Plots +using ReverseDiff + +using LinearAlgebra +using Random +``` + +Our goal here is to use a Bayesian neural network to classify points in an artificial dataset. +The code below generates data points arranged in a box-like pattern and displays a graph of the dataset we will be working with. + +```{julia} +# Number of points to generate. +N = 80 +M = round(Int, N / 4) +Random.seed!(1234) + +# Generate artificial data. +x1s = rand(M) * 4.5; +x2s = rand(M) * 4.5; +xt1s = Array([[x1s[i] + 0.5; x2s[i] + 0.5] for i in 1:M]) +x1s = rand(M) * 4.5; +x2s = rand(M) * 4.5; +append!(xt1s, Array([[x1s[i] - 5; x2s[i] - 5] for i in 1:M])) + +x1s = rand(M) * 4.5; +x2s = rand(M) * 4.5; +xt0s = Array([[x1s[i] + 0.5; x2s[i] - 5] for i in 1:M]) +x1s = rand(M) * 4.5; +x2s = rand(M) * 4.5; +append!(xt0s, Array([[x1s[i] - 5; x2s[i] + 0.5] for i in 1:M])) + +# Store all the data for later. +xs = [xt1s; xt0s] +ts = [ones(2 * M); zeros(2 * M)] + +# Plot data points. +function plot_data() + x1 = map(e -> e[1], xt1s) + y1 = map(e -> e[2], xt1s) + x2 = map(e -> e[1], xt0s) + y2 = map(e -> e[2], xt0s) + + Plots.scatter(x1, y1; color="red", clim=(0, 1)) + return Plots.scatter!(x2, y2; color="blue", clim=(0, 1)) +end + +plot_data() +``` + +## Building a Neural Network + +The next step is to define a [feedforward neural network](https://en.wikipedia.org/wiki/Feedforward_neural_network) where we express our parameters as distributions, and not single points as with traditional neural networks. +For this we will use `Dense` to define liner layers and compose them via `Chain`, both are neural network primitives from Flux. +The network `nn_initial` we created has two hidden layers with `tanh` activations and one output layer with sigmoid (`σ`) activation, as shown below. + +![](https://user-images.githubusercontent.com/422990/47970321-bd172080-e038-11e8-9c6d-6c2bd790bd8a.png) + +The `nn_initial` is an instance that acts as a function and can take data as inputs and output predictions. +We will define distributions on the neural network parameters and use `destructure` from Flux to extract the parameters as `parameters_initial`. +The function `destructure` also returns another function `reconstruct` that can take (new) parameters in and return us a neural network instance whose architecture is the same as `nn_initial` but with updated parameters. + +```{julia} +# Construct a neural network using Flux +nn_initial = Chain(Dense(2, 3, tanh), Dense(3, 2, tanh), Dense(2, 1, σ)) + +# Extract weights and a helper function to reconstruct NN from weights +parameters_initial, reconstruct = Flux.destructure(nn_initial) + +length(parameters_initial) # number of paraemters in NN +``` + +The probabilistic model specification below creates a `parameters` variable, which has IID normal variables. The `parameters` vector represents all parameters of our neural net (weights and biases). + +```{julia} +@model function bayes_nn(xs, ts, nparameters, reconstruct; alpha=0.09) + # Create the weight and bias vector. + parameters ~ MvNormal(Zeros(nparameters), I / alpha) + + # Construct NN from parameters + nn = reconstruct(parameters) + # Forward NN to make predictions + preds = nn(xs) + + # Observe each prediction. + for i in 1:length(ts) + ts[i] ~ Bernoulli(preds[i]) + end +end; +``` + +Inference can now be performed by calling `sample`. We use the `NUTS` Hamiltonian Monte Carlo sampler here. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +# Perform inference. +N = 5000 +ch = sample(bayes_nn(hcat(xs...), ts, length(parameters_initial), reconstruct), NUTS(;adtype=AutoReverseDiff()), N); +``` + +Now we extract the parameter samples from the sampled chain as `theta` (this is of size `5000 x 20` where `5000` is the number of iterations and `20` is the number of parameters). +We'll use these primarily to determine how good our model's classifier is. + +```{julia} +# Extract all weight and bias parameters. +theta = MCMCChains.group(ch, :parameters).value; +``` + +## Prediction Visualization + +We can use [MAP estimation](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) to classify our population by using the set of weights that provided the highest log posterior. + +```{julia} +# A helper to create NN from weights `theta` and run it through data `x` +nn_forward(x, theta) = reconstruct(theta)(x) + +# Plot the data we have. +plot_data() + +# Find the index that provided the highest log posterior in the chain. +_, i = findmax(ch[:lp]) + +# Extract the max row value from i. +i = i.I[1] + +# Plot the posterior distribution with a contour plot +x1_range = collect(range(-6; stop=6, length=25)) +x2_range = collect(range(-6; stop=6, length=25)) +Z = [nn_forward([x1, x2], theta[i, :])[1] for x1 in x1_range, x2 in x2_range] +contour!(x1_range, x2_range, Z) +``` + +The contour plot above shows that the MAP method is not too bad at classifying our data. + +Now we can visualize our predictions. + +$$ +p(\tilde{x} | X, \alpha) = \int_{\theta} p(\tilde{x} | \theta) p(\theta | X, \alpha) \approx \sum_{\theta \sim p(\theta | X, \alpha)}f_{\theta}(\tilde{x}) +$$ + +The `nn_predict` function takes the average predicted value from a network parameterized by weights drawn from the MCMC chain. + +```{julia} +# Return the average predicted value across +# multiple weights. +function nn_predict(x, theta, num) + return mean([nn_forward(x, theta[i, :])[1] for i in 1:10:num]) +end; +``` + +Next, we use the `nn_predict` function to predict the value at a sample of points where the `x1` and `x2` coordinates range between -6 and 6. As we can see below, we still have a satisfactory fit to our data, and more importantly, we can also see where the neural network is uncertain about its predictions much easier---those regions between cluster boundaries. + +```{julia} +# Plot the average prediction. +plot_data() + +n_end = 1500 +x1_range = collect(range(-6; stop=6, length=25)) +x2_range = collect(range(-6; stop=6, length=25)) +Z = [nn_predict([x1, x2], theta, n_end)[1] for x1 in x1_range, x2 in x2_range] +contour!(x1_range, x2_range, Z) +``` + +Suppose we are interested in how the predictive power of our Bayesian neural network evolved between samples. In that case, the following graph displays an animation of the contour plot generated from the network weights in samples 1 to 1,000. + + +```{julia} +# Number of iterations to plot. +n_end = 500 + +anim = @gif for i in 1:n_end + plot_data() + Z = [nn_forward([x1, x2], theta[i, :])[1] for x1 in x1_range, x2 in x2_range] + contour!(x1_range, x2_range, Z; title="Iteration $i", clim=(0, 1)) +end every 5 +``` + This has been an introduction to the applications of Turing and Flux in defining Bayesian neural networks. \ No newline at end of file diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/04-hidden-markov-model/Project.toml b/tutorials/04-hidden-markov-model/Project.toml old mode 100644 new mode 100755 index c43a70e12..3128533ae --- a/tutorials/04-hidden-markov-model/Project.toml +++ b/tutorials/04-hidden-markov-model/Project.toml @@ -1,4 +1,4 @@ -[deps] -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/04-hidden-markov-model/index.qmd b/tutorials/04-hidden-markov-model/index.qmd old mode 100644 new mode 100755 index f8174ba51..e720dd40c --- a/tutorials/04-hidden-markov-model/index.qmd +++ b/tutorials/04-hidden-markov-model/index.qmd @@ -1,186 +1,193 @@ ---- -title: Bayesian Hidden Markov Models -engine: julia ---- - -This tutorial illustrates training Bayesian [Hidden Markov Models](https://en.wikipedia.org/wiki/Hidden_Markov_model) (HMM) using Turing. The main goals are learning the transition matrix, emission parameter, and hidden states. For a more rigorous academic overview on Hidden Markov Models, see [An introduction to Hidden Markov Models and Bayesian Networks](http://mlg.eng.cam.ac.uk/zoubin/papers/ijprai.pdf) (Ghahramani, 2001). - -In this tutorial, we assume there are $k$ discrete hidden states; the observations are continuous and normally distributed - centered around the hidden states. This assumption reduces the number of parameters to be estimated in the emission matrix. - -Let's load the libraries we'll need. We also set a random seed (for reproducibility) and the automatic differentiation backend to forward mode (more [here](https://turinglang.org/dev/docs/using-turing/autodiff) on why this is useful). - -```{julia} -# Load libraries. -using Turing, StatsPlots, Random - -# Set a random seed and use the forward_diff AD mode. -Random.seed!(12345678); -``` - -## Simple State Detection - -In this example, we'll use something where the states and emission parameters are straightforward. - -```{julia} -# Define the emission parameter. -y = [ - 1.0, - 1.0, - 1.0, - 1.0, - 1.0, - 1.0, - 2.0, - 2.0, - 2.0, - 2.0, - 2.0, - 2.0, - 3.0, - 3.0, - 3.0, - 3.0, - 3.0, - 3.0, - 3.0, - 2.0, - 2.0, - 2.0, - 2.0, - 1.0, - 1.0, - 1.0, - 1.0, - 1.0, - 1.0, - 1.0, -]; -N = length(y); -K = 3; - -# Plot the data we just made. -plot(y; xlim=(0, 30), ylim=(-1, 5), size=(500, 250)) -``` - -We can see that we have three states, one for each height of the plot (1, 2, 3). This height is also our emission parameter, so state one produces a value of one, state two produces a value of two, and so on. - -Ultimately, we would like to understand three major parameters: - - 1. The transition matrix. This is a matrix that assigns a probability of switching from one state to any other state, including the state that we are already in. - 2. The emission matrix, which describes a typical value emitted by some state. In the plot above, the emission parameter for state one is simply one. - 3. The state sequence is our understanding of what state we were actually in when we observed some data. This is very important in more sophisticated HMM models, where the emission value does not equal our state. - -With this in mind, let's set up our model. We are going to use some of our knowledge as modelers to provide additional information about our system. This takes the form of the prior on our emission parameter. - -$$ -m_i \sim \mathrm{Normal}(i, 0.5) \quad \text{where} \quad m = \{1,2,3\} -$$ - -Simply put, this says that we expect state one to emit values in a Normally distributed manner, where the mean of each state's emissions is that state's value. The variance of 0.5 helps the model converge more quickly — consider the case where we have a variance of 1 or 2. In this case, the likelihood of observing a 2 when we are in state 1 is actually quite high, as it is within a standard deviation of the true emission value. Applying the prior that we are likely to be tightly centered around the mean prevents our model from being too confused about the state that is generating our observations. - -The priors on our transition matrix are noninformative, using `T[i] ~ Dirichlet(ones(K)/K)`. The Dirichlet prior used in this way assumes that the state is likely to change to any other state with equal probability. As we'll see, this transition matrix prior will be overwritten as we observe data. - -```{julia} -# Turing model definition. -@model function BayesHmm(y, K) - # Get observation length. - N = length(y) - - # State sequence. - s = tzeros(Int, N) - - # Emission matrix. - m = Vector(undef, K) - - # Transition matrix. - T = Vector{Vector}(undef, K) - - # Assign distributions to each element - # of the transition matrix and the - # emission matrix. - for i in 1:K - T[i] ~ Dirichlet(ones(K) / K) - m[i] ~ Normal(i, 0.5) - end - - # Observe each point of the input. - s[1] ~ Categorical(K) - y[1] ~ Normal(m[s[1]], 0.1) - - for i in 2:N - s[i] ~ Categorical(vec(T[s[i - 1]])) - y[i] ~ Normal(m[s[i]], 0.1) - end -end; -``` - -We will use a combination of two samplers ([HMC](https://turinglang.org/dev/docs/library/#Turing.Inference.HMC) and [Particle Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.PG)) by passing them to the [Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.Gibbs) sampler. The Gibbs sampler allows for compositional inference, where we can utilize different samplers on different parameters. - -In this case, we use HMC for `m` and `T`, representing the emission and transition matrices respectively. We use the Particle Gibbs sampler for `s`, the state sequence. You may wonder why it is that we are not assigning `s` to the HMC sampler, and why it is that we need compositional Gibbs sampling at all. - -The parameter `s` is not a continuous variable. It is a vector of **integers**, and thus Hamiltonian methods like HMC and [NUTS](https://turinglang.org/dev/docs/library/#Turing.Inference.NUTS) won't work correctly. Gibbs allows us to apply the right tools to the best effect. If you are a particularly advanced user interested in higher performance, you may benefit from setting up your Gibbs sampler to use [different automatic differentiation](https://turinglang.org/dev/docs/using-turing/autodiff#compositional-sampling-with-differing-ad-modes) backends for each parameter space. - -Time to run our sampler. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -g = Gibbs(HMC(0.01, 50, :m, :T), PG(120, :s)) -chn = sample(BayesHmm(y, 3), g, 1000); -``` - -Let's see how well our chain performed. -Ordinarily, using `display(chn)` would be a good first step, but we have generated a lot of parameters here (`s[1]`, `s[2]`, `m[1]`, and so on). -It's a bit easier to show how our model performed graphically. - -The code below generates an animation showing the graph of the data above, and the data our model generates in each sample. - -```{julia} -# Extract our m and s parameters from the chain. -m_set = MCMCChains.group(chn, :m).value -s_set = MCMCChains.group(chn, :s).value - -# Iterate through the MCMC samples. -Ns = 1:length(chn) - -# Make an animation. -animation = @gif for i in Ns - m = m_set[i, :] - s = Int.(s_set[i, :]) - emissions = m[s] - - p = plot( - y; - chn=:red, - size=(500, 250), - xlabel="Time", - ylabel="State", - legend=:topright, - label="True data", - xlim=(0, 30), - ylim=(-1, 5), - ) - plot!(emissions; color=:blue, label="Sample $i") -end every 3 -``` - -Looks like our model did a pretty good job, but we should also check to make sure our chain converges. A quick check is to examine whether the diagonal (representing the probability of remaining in the current state) of the transition matrix appears to be stationary. The code below extracts the diagonal and shows a traceplot of each persistence probability. - -```{julia} -# Index the chain with the persistence probabilities. -subchain = chn[["T[1][1]", "T[2][2]", "T[3][3]"]] - -plot(subchain; seriestype=:traceplot, title="Persistence Probability", legend=false) -``` - -A cursory examination of the traceplot above indicates that all three chains converged to something resembling -stationary. We can use the diagnostic functions provided by [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) to engage in some more formal tests, like the Heidelberg and Welch diagnostic: - -```{julia} -heideldiag(MCMCChains.group(chn, :T))[1] -``` - +--- +title: Bayesian Hidden Markov Models +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +This tutorial illustrates training Bayesian [Hidden Markov Models](https://en.wikipedia.org/wiki/Hidden_Markov_model) (HMM) using Turing. The main goals are learning the transition matrix, emission parameter, and hidden states. For a more rigorous academic overview on Hidden Markov Models, see [An introduction to Hidden Markov Models and Bayesian Networks](http://mlg.eng.cam.ac.uk/zoubin/papers/ijprai.pdf) (Ghahramani, 2001). + +In this tutorial, we assume there are $k$ discrete hidden states; the observations are continuous and normally distributed - centered around the hidden states. This assumption reduces the number of parameters to be estimated in the emission matrix. + +Let's load the libraries we'll need. We also set a random seed (for reproducibility) and the automatic differentiation backend to forward mode (more [here](https://turinglang.org/dev/docs/using-turing/autodiff) on why this is useful). + +```{julia} +# Load libraries. +using Turing, StatsPlots, Random + +# Set a random seed and use the forward_diff AD mode. +Random.seed!(12345678); +``` + +## Simple State Detection + +In this example, we'll use something where the states and emission parameters are straightforward. + +```{julia} +# Define the emission parameter. +y = [ + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 2.0, + 2.0, + 2.0, + 2.0, + 2.0, + 2.0, + 3.0, + 3.0, + 3.0, + 3.0, + 3.0, + 3.0, + 3.0, + 2.0, + 2.0, + 2.0, + 2.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, + 1.0, +]; +N = length(y); +K = 3; + +# Plot the data we just made. +plot(y; xlim=(0, 30), ylim=(-1, 5), size=(500, 250)) +``` + +We can see that we have three states, one for each height of the plot (1, 2, 3). This height is also our emission parameter, so state one produces a value of one, state two produces a value of two, and so on. + +Ultimately, we would like to understand three major parameters: + + 1. The transition matrix. This is a matrix that assigns a probability of switching from one state to any other state, including the state that we are already in. + 2. The emission matrix, which describes a typical value emitted by some state. In the plot above, the emission parameter for state one is simply one. + 3. The state sequence is our understanding of what state we were actually in when we observed some data. This is very important in more sophisticated HMM models, where the emission value does not equal our state. + +With this in mind, let's set up our model. We are going to use some of our knowledge as modelers to provide additional information about our system. This takes the form of the prior on our emission parameter. + +$$ +m_i \sim \mathrm{Normal}(i, 0.5) \quad \text{where} \quad m = \{1,2,3\} +$$ + +Simply put, this says that we expect state one to emit values in a Normally distributed manner, where the mean of each state's emissions is that state's value. The variance of 0.5 helps the model converge more quickly — consider the case where we have a variance of 1 or 2. In this case, the likelihood of observing a 2 when we are in state 1 is actually quite high, as it is within a standard deviation of the true emission value. Applying the prior that we are likely to be tightly centered around the mean prevents our model from being too confused about the state that is generating our observations. + +The priors on our transition matrix are noninformative, using `T[i] ~ Dirichlet(ones(K)/K)`. The Dirichlet prior used in this way assumes that the state is likely to change to any other state with equal probability. As we'll see, this transition matrix prior will be overwritten as we observe data. + +```{julia} +# Turing model definition. +@model function BayesHmm(y, K) + # Get observation length. + N = length(y) + + # State sequence. + s = tzeros(Int, N) + + # Emission matrix. + m = Vector(undef, K) + + # Transition matrix. + T = Vector{Vector}(undef, K) + + # Assign distributions to each element + # of the transition matrix and the + # emission matrix. + for i in 1:K + T[i] ~ Dirichlet(ones(K) / K) + m[i] ~ Normal(i, 0.5) + end + + # Observe each point of the input. + s[1] ~ Categorical(K) + y[1] ~ Normal(m[s[1]], 0.1) + + for i in 2:N + s[i] ~ Categorical(vec(T[s[i - 1]])) + y[i] ~ Normal(m[s[i]], 0.1) + end +end; +``` + +We will use a combination of two samplers ([HMC](https://turinglang.org/dev/docs/library/#Turing.Inference.HMC) and [Particle Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.PG)) by passing them to the [Gibbs](https://turinglang.org/dev/docs/library/#Turing.Inference.Gibbs) sampler. The Gibbs sampler allows for compositional inference, where we can utilize different samplers on different parameters. + +In this case, we use HMC for `m` and `T`, representing the emission and transition matrices respectively. We use the Particle Gibbs sampler for `s`, the state sequence. You may wonder why it is that we are not assigning `s` to the HMC sampler, and why it is that we need compositional Gibbs sampling at all. + +The parameter `s` is not a continuous variable. It is a vector of **integers**, and thus Hamiltonian methods like HMC and [NUTS](https://turinglang.org/dev/docs/library/#Turing.Inference.NUTS) won't work correctly. Gibbs allows us to apply the right tools to the best effect. If you are a particularly advanced user interested in higher performance, you may benefit from setting up your Gibbs sampler to use [different automatic differentiation](https://turinglang.org/dev/docs/using-turing/autodiff#compositional-sampling-with-differing-ad-modes) backends for each parameter space. + +Time to run our sampler. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +g = Gibbs(HMC(0.01, 50, :m, :T), PG(120, :s)) +chn = sample(BayesHmm(y, 3), g, 1000); +``` + +Let's see how well our chain performed. +Ordinarily, using `display(chn)` would be a good first step, but we have generated a lot of parameters here (`s[1]`, `s[2]`, `m[1]`, and so on). +It's a bit easier to show how our model performed graphically. + +The code below generates an animation showing the graph of the data above, and the data our model generates in each sample. + +```{julia} +# Extract our m and s parameters from the chain. +m_set = MCMCChains.group(chn, :m).value +s_set = MCMCChains.group(chn, :s).value + +# Iterate through the MCMC samples. +Ns = 1:length(chn) + +# Make an animation. +animation = @gif for i in Ns + m = m_set[i, :] + s = Int.(s_set[i, :]) + emissions = m[s] + + p = plot( + y; + chn=:red, + size=(500, 250), + xlabel="Time", + ylabel="State", + legend=:topright, + label="True data", + xlim=(0, 30), + ylim=(-1, 5), + ) + plot!(emissions; color=:blue, label="Sample $i") +end every 3 +``` + +Looks like our model did a pretty good job, but we should also check to make sure our chain converges. A quick check is to examine whether the diagonal (representing the probability of remaining in the current state) of the transition matrix appears to be stationary. The code below extracts the diagonal and shows a traceplot of each persistence probability. + +```{julia} +# Index the chain with the persistence probabilities. +subchain = chn[["T[1][1]", "T[2][2]", "T[3][3]"]] + +plot(subchain; seriestype=:traceplot, title="Persistence Probability", legend=false) +``` + +A cursory examination of the traceplot above indicates that all three chains converged to something resembling +stationary. We can use the diagnostic functions provided by [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) to engage in some more formal tests, like the Heidelberg and Welch diagnostic: + +```{julia} +heideldiag(MCMCChains.group(chn, :T))[1] +``` + The p-values on the test suggest that we cannot reject the hypothesis that the observed sequence comes from a stationary distribution, so we can be reasonably confident that our transition matrix has converged to something reasonable. \ No newline at end of file diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml old mode 100644 new mode 100755 index 42c875d93..c8e651482 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -954,9 +954,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "065c36f95709dd4a676dc6839a35d6fa6f192f24" +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "7.1.0" +version = "6.6.3" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1257,9 +1257,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" +git-tree-sha1 = "e0cea7ec219ada9ac80ec2e82e374ab2f154ae05" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.17" +version = "0.9.16" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1287,9 +1287,9 @@ version = "0.1.5" [[deps.NamedArrays]] deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" +git-tree-sha1 = "0ae91efac93c3859f5c812a24c9468bb9e50b028" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.2" +version = "0.10.1" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1693,9 +1693,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" +git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.3" +version = "1.4.2" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2029,9 +2029,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" +git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.4" +version = "0.1.3" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" diff --git a/tutorials/05-linear-regression/Project.toml b/tutorials/05-linear-regression/Project.toml old mode 100644 new mode 100755 index e066be665..007bb67ab --- a/tutorials/05-linear-regression/Project.toml +++ b/tutorials/05-linear-regression/Project.toml @@ -1,10 +1,10 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/05-linear-regression/index.qmd b/tutorials/05-linear-regression/index.qmd old mode 100644 new mode 100755 index 55e700b45..a0863da7e --- a/tutorials/05-linear-regression/index.qmd +++ b/tutorials/05-linear-regression/index.qmd @@ -1,242 +1,249 @@ ---- -title: Linear Regression -engine: julia ---- - -Turing is powerful when applied to complex hierarchical models, but it can also be put to task at common statistical procedures, like [linear regression](https://en.wikipedia.org/wiki/Linear_regression). -This tutorial covers how to implement a linear regression model in Turing. - -## Set Up - -We begin by importing all the necessary libraries. - -```{julia} -# Import Turing. -using Turing - -# Package for loading the data set. -using RDatasets - -# Package for visualization. -using StatsPlots - -# Functionality for splitting the data. -using MLUtils: splitobs - -# Functionality for constructing arrays with identical elements efficiently. -using FillArrays - -# Functionality for normalizing the data and evaluating the model predictions. -using StatsBase - -# Functionality for working with scaled identity matrices. -using LinearAlgebra - -# Set a seed for reproducibility. -using Random -Random.seed!(0); -``` - -```{julia} -#| output: false -setprogress!(false) -``` - -We will use the `mtcars` dataset from the [RDatasets](https://github.com/JuliaStats/RDatasets.jl) package. -`mtcars` contains a variety of statistics on different car models, including their miles per gallon, number of cylinders, and horsepower, among others. - -We want to know if we can construct a Bayesian linear regression model to predict the miles per gallon of a car, given the other statistics it has. -Let us take a look at the data we have. - -```{julia} -# Load the dataset. -data = RDatasets.dataset("datasets", "mtcars") - -# Show the first six rows of the dataset. -first(data, 6) -``` - -```{julia} -size(data) -``` - -The next step is to get our data ready for testing. We'll split the `mtcars` dataset into two subsets, one for training our model and one for evaluating our model. Then, we separate the targets we want to learn (`MPG`, in this case) and standardize the datasets by subtracting each column's means and dividing by the standard deviation of that column. The resulting data is not very familiar looking, but this standardization process helps the sampler converge far easier. - -```{julia} -# Remove the model column. -select!(data, Not(:Model)) - -# Split our dataset 70%/30% into training/test sets. -trainset, testset = map(DataFrame, splitobs(data; at=0.7, shuffle=true)) - -# Turing requires data in matrix form. -target = :MPG -train = Matrix(select(trainset, Not(target))) -test = Matrix(select(testset, Not(target))) -train_target = trainset[:, target] -test_target = testset[:, target] - -# Standardize the features. -dt_features = fit(ZScoreTransform, train; dims=1) -StatsBase.transform!(dt_features, train) -StatsBase.transform!(dt_features, test) - -# Standardize the targets. -dt_targets = fit(ZScoreTransform, train_target) -StatsBase.transform!(dt_targets, train_target) -StatsBase.transform!(dt_targets, test_target); -``` - -## Model Specification - -In a traditional frequentist model using [OLS](https://en.wikipedia.org/wiki/Ordinary_least_squares), our model might look like: - -$$ -\mathrm{MPG}_i = \alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i} -$$ - -where $\boldsymbol{\beta}$ is a vector of coefficients and $\boldsymbol{X}$ is a vector of inputs for observation $i$. The Bayesian model we are more concerned with is the following: - -$$ -\mathrm{MPG}_i \sim \mathcal{N}(\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}, \sigma^2) -$$ - -where $\alpha$ is an intercept term common to all observations, $\boldsymbol{\beta}$ is a coefficient vector, $\boldsymbol{X_i}$ is the observed data for car $i$, and $\sigma^2$ is a common variance term. - -For $\sigma^2$, we assign a prior of `truncated(Normal(0, 100); lower=0)`. -This is consistent with [Andrew Gelman's recommendations](http://www.stat.columbia.edu/%7Egelman/research/published/taumain.pdf) on noninformative priors for variance. -The intercept term ($\alpha$) is assumed to be normally distributed with a mean of zero and a variance of three. -This represents our assumptions that miles per gallon can be explained mostly by our assorted variables, but a high variance term indicates our uncertainty about that. -Each coefficient is assumed to be normally distributed with a mean of zero and a variance of 10. -We do not know that our coefficients are different from zero, and we don't know which ones are likely to be the most important, so the variance term is quite high. -Lastly, each observation $y_i$ is distributed according to the calculated `mu` term given by $\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}$. - -```{julia} -# Bayesian linear regression. -@model function linear_regression(x, y) - # Set variance prior. - σ² ~ truncated(Normal(0, 100); lower=0) - - # Set intercept prior. - intercept ~ Normal(0, sqrt(3)) - - # Set the priors on our coefficients. - nfeatures = size(x, 2) - coefficients ~ MvNormal(Zeros(nfeatures), 10.0 * I) - - # Calculate all the mu terms. - mu = intercept .+ x * coefficients - return y ~ MvNormal(mu, σ² * I) -end -``` - -With our model specified, we can call the sampler. We will use the No U-Turn Sampler ([NUTS](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS)) here. - -```{julia} -model = linear_regression(train, train_target) -chain = sample(model, NUTS(), 5_000) -``` - -We can also check the densities and traces of the parameters visually using the `plot` functionality. - -```{julia} -plot(chain) -``` - -It looks like all parameters have converged. - -```{julia} -#| echo: false -let - ess_df = ess(chain) - @assert minimum(ess_df[:, :ess]) > 500 "Minimum ESS: $(minimum(ess_df[:, :ess])) - not > 700" - @assert mean(ess_df[:, :ess]) > 2_000 "Mean ESS: $(mean(ess_df[:, :ess])) - not > 2000" - @assert maximum(ess_df[:, :ess]) > 3_500 "Maximum ESS: $(maximum(ess_df[:, :ess])) - not > 3500" -end -``` - -## Comparing to OLS - -A satisfactory test of our model is to evaluate how well it predicts. Importantly, we want to compare our model to existing tools like OLS. The code below uses the [GLM.jl]() package to generate a traditional OLS multiple regression model on the same data as our probabilistic model. - -```{julia} -# Import the GLM package. -using GLM - -# Perform multiple regression OLS. -train_with_intercept = hcat(ones(size(train, 1)), train) -ols = lm(train_with_intercept, train_target) - -# Compute predictions on the training data set and unstandardize them. -train_prediction_ols = GLM.predict(ols) -StatsBase.reconstruct!(dt_targets, train_prediction_ols) - -# Compute predictions on the test data set and unstandardize them. -test_with_intercept = hcat(ones(size(test, 1)), test) -test_prediction_ols = GLM.predict(ols, test_with_intercept) -StatsBase.reconstruct!(dt_targets, test_prediction_ols); -``` - -The function below accepts a chain and an input matrix and calculates predictions. We use the samples of the model parameters in the chain starting with sample 200. - -```{julia} -# Make a prediction given an input vector. -function prediction(chain, x) - p = get_params(chain[200:end, :, :]) - targets = p.intercept' .+ x * reduce(hcat, p.coefficients)' - return vec(mean(targets; dims=2)) -end -``` - -When we make predictions, we unstandardize them so they are more understandable. - -```{julia} -# Calculate the predictions for the training and testing sets and unstandardize them. -train_prediction_bayes = prediction(chain, train) -StatsBase.reconstruct!(dt_targets, train_prediction_bayes) -test_prediction_bayes = prediction(chain, test) -StatsBase.reconstruct!(dt_targets, test_prediction_bayes) - -# Show the predictions on the test data set. -DataFrame(; MPG=testset[!, target], Bayes=test_prediction_bayes, OLS=test_prediction_ols) -``` - -Now let's evaluate the loss for each method, and each prediction set. We will use the mean squared error to evaluate loss, given by -$$ -\mathrm{MSE} = \frac{1}{n} \sum_{i=1}^n {(y_i - \hat{y_i})^2} -$$ -where $y_i$ is the actual value (true MPG) and $\hat{y_i}$ is the predicted value using either OLS or Bayesian linear regression. A lower SSE indicates a closer fit to the data. - -```{julia} -println( - "Training set:", - "\n\tBayes loss: ", - msd(train_prediction_bayes, trainset[!, target]), - "\n\tOLS loss: ", - msd(train_prediction_ols, trainset[!, target]), -) - -println( - "Test set:", - "\n\tBayes loss: ", - msd(test_prediction_bayes, testset[!, target]), - "\n\tOLS loss: ", - msd(test_prediction_ols, testset[!, target]), -) -``` - -```{julia} -#| echo: false -let - bayes_train_loss = msd(train_prediction_bayes, trainset[!, target]) - bayes_test_loss = msd(test_prediction_bayes, testset[!, target]) - ols_train_loss = msd(train_prediction_ols, trainset[!, target]) - ols_test_loss = msd(test_prediction_ols, testset[!, target]) - @assert bayes_train_loss < bayes_test_loss "Bayesian training loss ($bayes_train_loss) >= Bayesian test loss ($bayes_test_loss)" - @assert ols_train_loss < ols_test_loss "OLS training loss ($ols_train_loss) >= OLS test loss ($ols_test_loss)" - @assert isapprox(bayes_train_loss, ols_train_loss; rtol=0.01) "Difference between Bayesian training loss ($bayes_train_loss) and OLS training loss ($ols_train_loss) unexpectedly large!" - @assert isapprox(bayes_test_loss, ols_test_loss; rtol=0.05) "Difference between Bayesian test loss ($bayes_test_loss) and OLS test loss ($ols_test_loss) unexpectedly large!" -end -``` - -As we can see above, OLS and our Bayesian model fit our training and test data set about the same. +--- +title: Linear Regression +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +Turing is powerful when applied to complex hierarchical models, but it can also be put to task at common statistical procedures, like [linear regression](https://en.wikipedia.org/wiki/Linear_regression). +This tutorial covers how to implement a linear regression model in Turing. + +## Set Up + +We begin by importing all the necessary libraries. + +```{julia} +# Import Turing. +using Turing + +# Package for loading the data set. +using RDatasets + +# Package for visualization. +using StatsPlots + +# Functionality for splitting the data. +using MLUtils: splitobs + +# Functionality for constructing arrays with identical elements efficiently. +using FillArrays + +# Functionality for normalizing the data and evaluating the model predictions. +using StatsBase + +# Functionality for working with scaled identity matrices. +using LinearAlgebra + +# Set a seed for reproducibility. +using Random +Random.seed!(0); +``` + +```{julia} +#| output: false +setprogress!(false) +``` + +We will use the `mtcars` dataset from the [RDatasets](https://github.com/JuliaStats/RDatasets.jl) package. +`mtcars` contains a variety of statistics on different car models, including their miles per gallon, number of cylinders, and horsepower, among others. + +We want to know if we can construct a Bayesian linear regression model to predict the miles per gallon of a car, given the other statistics it has. +Let us take a look at the data we have. + +```{julia} +# Load the dataset. +data = RDatasets.dataset("datasets", "mtcars") + +# Show the first six rows of the dataset. +first(data, 6) +``` + +```{julia} +size(data) +``` + +The next step is to get our data ready for testing. We'll split the `mtcars` dataset into two subsets, one for training our model and one for evaluating our model. Then, we separate the targets we want to learn (`MPG`, in this case) and standardize the datasets by subtracting each column's means and dividing by the standard deviation of that column. The resulting data is not very familiar looking, but this standardization process helps the sampler converge far easier. + +```{julia} +# Remove the model column. +select!(data, Not(:Model)) + +# Split our dataset 70%/30% into training/test sets. +trainset, testset = map(DataFrame, splitobs(data; at=0.7, shuffle=true)) + +# Turing requires data in matrix form. +target = :MPG +train = Matrix(select(trainset, Not(target))) +test = Matrix(select(testset, Not(target))) +train_target = trainset[:, target] +test_target = testset[:, target] + +# Standardize the features. +dt_features = fit(ZScoreTransform, train; dims=1) +StatsBase.transform!(dt_features, train) +StatsBase.transform!(dt_features, test) + +# Standardize the targets. +dt_targets = fit(ZScoreTransform, train_target) +StatsBase.transform!(dt_targets, train_target) +StatsBase.transform!(dt_targets, test_target); +``` + +## Model Specification + +In a traditional frequentist model using [OLS](https://en.wikipedia.org/wiki/Ordinary_least_squares), our model might look like: + +$$ +\mathrm{MPG}_i = \alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i} +$$ + +where $\boldsymbol{\beta}$ is a vector of coefficients and $\boldsymbol{X}$ is a vector of inputs for observation $i$. The Bayesian model we are more concerned with is the following: + +$$ +\mathrm{MPG}_i \sim \mathcal{N}(\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}, \sigma^2) +$$ + +where $\alpha$ is an intercept term common to all observations, $\boldsymbol{\beta}$ is a coefficient vector, $\boldsymbol{X_i}$ is the observed data for car $i$, and $\sigma^2$ is a common variance term. + +For $\sigma^2$, we assign a prior of `truncated(Normal(0, 100); lower=0)`. +This is consistent with [Andrew Gelman's recommendations](http://www.stat.columbia.edu/%7Egelman/research/published/taumain.pdf) on noninformative priors for variance. +The intercept term ($\alpha$) is assumed to be normally distributed with a mean of zero and a variance of three. +This represents our assumptions that miles per gallon can be explained mostly by our assorted variables, but a high variance term indicates our uncertainty about that. +Each coefficient is assumed to be normally distributed with a mean of zero and a variance of 10. +We do not know that our coefficients are different from zero, and we don't know which ones are likely to be the most important, so the variance term is quite high. +Lastly, each observation $y_i$ is distributed according to the calculated `mu` term given by $\alpha + \boldsymbol{\beta}^\mathsf{T}\boldsymbol{X_i}$. + +```{julia} +# Bayesian linear regression. +@model function linear_regression(x, y) + # Set variance prior. + σ² ~ truncated(Normal(0, 100); lower=0) + + # Set intercept prior. + intercept ~ Normal(0, sqrt(3)) + + # Set the priors on our coefficients. + nfeatures = size(x, 2) + coefficients ~ MvNormal(Zeros(nfeatures), 10.0 * I) + + # Calculate all the mu terms. + mu = intercept .+ x * coefficients + return y ~ MvNormal(mu, σ² * I) +end +``` + +With our model specified, we can call the sampler. We will use the No U-Turn Sampler ([NUTS](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS)) here. + +```{julia} +model = linear_regression(train, train_target) +chain = sample(model, NUTS(), 5_000) +``` + +We can also check the densities and traces of the parameters visually using the `plot` functionality. + +```{julia} +plot(chain) +``` + +It looks like all parameters have converged. + +```{julia} +#| echo: false +let + ess_df = ess(chain) + @assert minimum(ess_df[:, :ess]) > 500 "Minimum ESS: $(minimum(ess_df[:, :ess])) - not > 700" + @assert mean(ess_df[:, :ess]) > 2_000 "Mean ESS: $(mean(ess_df[:, :ess])) - not > 2000" + @assert maximum(ess_df[:, :ess]) > 3_500 "Maximum ESS: $(maximum(ess_df[:, :ess])) - not > 3500" +end +``` + +## Comparing to OLS + +A satisfactory test of our model is to evaluate how well it predicts. Importantly, we want to compare our model to existing tools like OLS. The code below uses the [GLM.jl]() package to generate a traditional OLS multiple regression model on the same data as our probabilistic model. + +```{julia} +# Import the GLM package. +using GLM + +# Perform multiple regression OLS. +train_with_intercept = hcat(ones(size(train, 1)), train) +ols = lm(train_with_intercept, train_target) + +# Compute predictions on the training data set and unstandardize them. +train_prediction_ols = GLM.predict(ols) +StatsBase.reconstruct!(dt_targets, train_prediction_ols) + +# Compute predictions on the test data set and unstandardize them. +test_with_intercept = hcat(ones(size(test, 1)), test) +test_prediction_ols = GLM.predict(ols, test_with_intercept) +StatsBase.reconstruct!(dt_targets, test_prediction_ols); +``` + +The function below accepts a chain and an input matrix and calculates predictions. We use the samples of the model parameters in the chain starting with sample 200. + +```{julia} +# Make a prediction given an input vector. +function prediction(chain, x) + p = get_params(chain[200:end, :, :]) + targets = p.intercept' .+ x * reduce(hcat, p.coefficients)' + return vec(mean(targets; dims=2)) +end +``` + +When we make predictions, we unstandardize them so they are more understandable. + +```{julia} +# Calculate the predictions for the training and testing sets and unstandardize them. +train_prediction_bayes = prediction(chain, train) +StatsBase.reconstruct!(dt_targets, train_prediction_bayes) +test_prediction_bayes = prediction(chain, test) +StatsBase.reconstruct!(dt_targets, test_prediction_bayes) + +# Show the predictions on the test data set. +DataFrame(; MPG=testset[!, target], Bayes=test_prediction_bayes, OLS=test_prediction_ols) +``` + +Now let's evaluate the loss for each method, and each prediction set. We will use the mean squared error to evaluate loss, given by +$$ +\mathrm{MSE} = \frac{1}{n} \sum_{i=1}^n {(y_i - \hat{y_i})^2} +$$ +where $y_i$ is the actual value (true MPG) and $\hat{y_i}$ is the predicted value using either OLS or Bayesian linear regression. A lower SSE indicates a closer fit to the data. + +```{julia} +println( + "Training set:", + "\n\tBayes loss: ", + msd(train_prediction_bayes, trainset[!, target]), + "\n\tOLS loss: ", + msd(train_prediction_ols, trainset[!, target]), +) + +println( + "Test set:", + "\n\tBayes loss: ", + msd(test_prediction_bayes, testset[!, target]), + "\n\tOLS loss: ", + msd(test_prediction_ols, testset[!, target]), +) +``` + +```{julia} +#| echo: false +let + bayes_train_loss = msd(train_prediction_bayes, trainset[!, target]) + bayes_test_loss = msd(test_prediction_bayes, testset[!, target]) + ols_train_loss = msd(train_prediction_ols, trainset[!, target]) + ols_test_loss = msd(test_prediction_ols, testset[!, target]) + @assert bayes_train_loss < bayes_test_loss "Bayesian training loss ($bayes_train_loss) >= Bayesian test loss ($bayes_test_loss)" + @assert ols_train_loss < ols_test_loss "OLS training loss ($ols_train_loss) >= OLS test loss ($ols_test_loss)" + @assert isapprox(bayes_train_loss, ols_train_loss; rtol=0.01) "Difference between Bayesian training loss ($bayes_train_loss) and OLS training loss ($ols_train_loss) unexpectedly large!" + @assert isapprox(bayes_test_loss, ols_test_loss; rtol=0.05) "Difference between Bayesian test loss ($bayes_test_loss) and OLS test loss ($ols_test_loss) unexpectedly large!" +end +``` + +As we can see above, OLS and our Bayesian model fit our training and test data set about the same. diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/06-infinite-mixture-model/Project.toml b/tutorials/06-infinite-mixture-model/Project.toml old mode 100644 new mode 100755 index dc3ff2545..a00d3da2c --- a/tutorials/06-infinite-mixture-model/Project.toml +++ b/tutorials/06-infinite-mixture-model/Project.toml @@ -1,4 +1,4 @@ -[deps] -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/06-infinite-mixture-model/index.qmd b/tutorials/06-infinite-mixture-model/index.qmd old mode 100644 new mode 100755 index 7491e1f14..1b0ea9a9e --- a/tutorials/06-infinite-mixture-model/index.qmd +++ b/tutorials/06-infinite-mixture-model/index.qmd @@ -1,277 +1,284 @@ ---- -title: Probabilistic Modelling using the Infinite Mixture Model -engine: julia ---- - -In many applications it is desirable to allow the model to adjust its complexity to the amount of data. Consider for example the task of assigning objects into clusters or groups. This task often involves the specification of the number of groups. However, often times it is not known beforehand how many groups exist. Moreover, in some applictions, e.g. modelling topics in text documents or grouping species, the number of examples per group is heavy tailed. This makes it impossible to predefine the number of groups and requiring the model to form new groups when data points from previously unseen groups are observed. - -A natural approach for such applications is the use of non-parametric models. This tutorial will introduce how to use the Dirichlet process in a mixture of infinitely many Gaussians using Turing. For further information on Bayesian nonparametrics and the Dirichlet process we refer to the [introduction by Zoubin Ghahramani](http://mlg.eng.cam.ac.uk/pub/pdf/Gha12.pdf) and the book "Fundamentals of Nonparametric Bayesian Inference" by Subhashis Ghosal and Aad van der Vaart. - -```{julia} -using Turing -``` - -## Mixture Model - -Before introducing infinite mixture models in Turing, we will briefly review the construction of finite mixture models. Subsequently, we will define how to use the [Chinese restaurant process](https://en.wikipedia.org/wiki/Chinese_restaurant_process) construction of a Dirichlet process for non-parametric clustering. - -#### Two-Component Model - -First, consider the simple case of a mixture model with two Gaussian components with fixed covariance. -The generative process of such a model can be written as: - -\begin{equation*} -\begin{aligned} -\pi_1 &\sim \mathrm{Beta}(a, b) \\ -\pi_2 &= 1-\pi_1 \\ -\mu_1 &\sim \mathrm{Normal}(\mu_0, \Sigma_0) \\ -\mu_2 &\sim \mathrm{Normal}(\mu_0, \Sigma_0) \\ -z_i &\sim \mathrm{Categorical}(\pi_1, \pi_2) \\ -x_i &\sim \mathrm{Normal}(\mu_{z_i}, \Sigma) -\end{aligned} -\end{equation*} - -where $\pi_1, \pi_2$ are the mixing weights of the mixture model, i.e. $\pi_1 + \pi_2 = 1$, and $z_i$ is a latent assignment of the observation $x_i$ to a component (Gaussian). - -We can implement this model in Turing for 1D data as follows: - -```{julia} -@model function two_model(x) - # Hyper-parameters - μ0 = 0.0 - σ0 = 1.0 - - # Draw weights. - π1 ~ Beta(1, 1) - π2 = 1 - π1 - - # Draw locations of the components. - μ1 ~ Normal(μ0, σ0) - μ2 ~ Normal(μ0, σ0) - - # Draw latent assignment. - z ~ Categorical([π1, π2]) - - # Draw observation from selected component. - if z == 1 - x ~ Normal(μ1, 1.0) - else - x ~ Normal(μ2, 1.0) - end -end -``` - -#### Finite Mixture Model - -If we have more than two components, this model can elegantly be extended using a Dirichlet distribution as prior for the mixing weights $\pi_1, \dots, \pi_K$. Note that the Dirichlet distribution is the multivariate generalization of the beta distribution. The resulting model can be written as: - -$$ -\begin{align} -(\pi_1, \dots, \pi_K) &\sim Dirichlet(K, \alpha) \\ -\mu_k &\sim \mathrm{Normal}(\mu_0, \Sigma_0), \;\; \forall k \\ -z &\sim Categorical(\pi_1, \dots, \pi_K) \\ -x &\sim \mathrm{Normal}(\mu_z, \Sigma) -\end{align} -$$ - -which resembles the model in the [Gaussian mixture model tutorial](https://turinglang.org/stable/tutorials/01-gaussian-mixture-model/) with a slightly different notation. - -## Infinite Mixture Model - -The question now arises, is there a generalization of a Dirichlet distribution for which the dimensionality $K$ is infinite, i.e. $K = \infty$? - -But first, to implement an infinite Gaussian mixture model in Turing, we first need to load the `Turing.RandomMeasures` module. `RandomMeasures` contains a variety of tools useful in nonparametrics. - -```{julia} -using Turing.RandomMeasures -``` - -We now will utilize the fact that one can integrate out the mixing weights in a Gaussian mixture model allowing us to arrive at the Chinese restaurant process construction. See Carl E. Rasmussen: [The Infinite Gaussian Mixture Model](https://www.seas.harvard.edu/courses/cs281/papers/rasmussen-1999a.pdf), NIPS (2000) for details. - -In fact, if the mixing weights are integrated out, the conditional prior for the latent variable $z$ is given by: - -$$ -p(z_i = k \mid z_{\not i}, \alpha) = \frac{n_k + \alpha K}{N - 1 + \alpha} -$$ - -where $z_{\not i}$ are the latent assignments of all observations except observation $i$. Note that we use $n_k$ to denote the number of observations at component $k$ excluding observation $i$. The parameter $\alpha$ is the concentration parameter of the Dirichlet distribution used as prior over the mixing weights. - -#### Chinese Restaurant Process - -To obtain the Chinese restaurant process construction, we can now derive the conditional prior if $K \rightarrow \infty$. - -For $n_k > 0$ we obtain: - -$$ -p(z_i = k \mid z_{\not i}, \alpha) = \frac{n_k}{N - 1 + \alpha} -$$ - -and for all infinitely many clusters that are empty (combined) we get: - -$$ -p(z_i = k \mid z_{\not i}, \alpha) = \frac{\alpha}{N - 1 + \alpha} -$$ - -Those equations show that the conditional prior for component assignments is proportional to the number of such observations, meaning that the Chinese restaurant process has a rich get richer property. - -To get a better understanding of this property, we can plot the cluster choosen by for each new observation drawn from the conditional prior. - -```{julia} -# Concentration parameter. -α = 10.0 - -# Random measure, e.g. Dirichlet process. -rpm = DirichletProcess(α) - -# Cluster assignments for each observation. -z = Vector{Int}() - -# Maximum number of observations we observe. -Nmax = 500 - -for i in 1:Nmax - # Number of observations per cluster. - K = isempty(z) ? 0 : maximum(z) - nk = Vector{Int}(map(k -> sum(z .== k), 1:K)) - - # Draw new assignment. - push!(z, rand(ChineseRestaurantProcess(rpm, nk))) -end -``` - -```{julia} -using Plots - -# Plot the cluster assignments over time -@gif for i in 1:Nmax - scatter( - collect(1:i), - z[1:i]; - markersize=2, - xlabel="observation (i)", - ylabel="cluster (k)", - legend=false, - ) -end -``` - -Further, we can see that the number of clusters is logarithmic in the number of observations and data points. This is a side-effect of the "rich-get-richer" phenomenon, i.e. we expect large clusters and thus the number of clusters has to be smaller than the number of observations. - -$$ -\mathbb{E}[K \mid N] \approx \alpha \cdot log \big(1 + \frac{N}{\alpha}\big) -$$ - -We can see from the equation that the concentration parameter $\alpha$ allows us to control the number of clusters formed *a priori*. - -In Turing we can implement an infinite Gaussian mixture model using the Chinese restaurant process construction of a Dirichlet process as follows: - -```{julia} -@model function infiniteGMM(x) - # Hyper-parameters, i.e. concentration parameter and parameters of H. - α = 1.0 - μ0 = 0.0 - σ0 = 1.0 - - # Define random measure, e.g. Dirichlet process. - rpm = DirichletProcess(α) - - # Define the base distribution, i.e. expected value of the Dirichlet process. - H = Normal(μ0, σ0) - - # Latent assignment. - z = tzeros(Int, length(x)) - - # Locations of the infinitely many clusters. - μ = tzeros(Float64, 0) - - for i in 1:length(x) - - # Number of clusters. - K = maximum(z) - nk = Vector{Int}(map(k -> sum(z .== k), 1:K)) - - # Draw the latent assignment. - z[i] ~ ChineseRestaurantProcess(rpm, nk) - - # Create a new cluster? - if z[i] > K - push!(μ, 0.0) - - # Draw location of new cluster. - μ[z[i]] ~ H - end - - # Draw observation. - x[i] ~ Normal(μ[z[i]], 1.0) - end -end -``` - -We can now use Turing to infer the assignments of some data points. First, we will create some random data that comes from three clusters, with means of 0, -5, and 10. - -```{julia} -using Plots, Random - -# Generate some test data. -Random.seed!(1) -data = vcat(randn(10), randn(10) .- 5, randn(10) .+ 10) -data .-= mean(data) -data /= std(data); -``` - -Next, we'll sample from our posterior using SMC. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -# MCMC sampling -Random.seed!(2) -iterations = 1000 -model_fun = infiniteGMM(data); -chain = sample(model_fun, SMC(), iterations); -``` - -Finally, we can plot the number of clusters in each sample. - -```{julia} -# Extract the number of clusters for each sample of the Markov chain. -k = map( - t -> length(unique(vec(chain[t, MCMCChains.namesingroup(chain, :z), :].value))), - 1:iterations, -); - -# Visualize the number of clusters. -plot(k; xlabel="Iteration", ylabel="Number of clusters", label="Chain 1") -``` - -If we visualize the histogram of the number of clusters sampled from our posterior, we observe that the model seems to prefer 3 clusters, which is the true number of clusters. Note that the number of clusters in a Dirichlet process mixture model is not limited a priori and will grow to infinity with probability one. However, if conditioned on data the posterior will concentrate on a finite number of clusters enforcing the resulting model to have a finite amount of clusters. It is, however, not given that the posterior of a Dirichlet process Gaussian mixture model converges to the true number of clusters, given that data comes from a finite mixture model. See Jeffrey Miller and Matthew Harrison: [A simple example of Dirichlet process mixture inconsitency for the number of components](https://arxiv.org/pdf/1301.2708.pdf) for details. - -```{julia} -histogram(k; xlabel="Number of clusters", legend=false) -``` - -One issue with the Chinese restaurant process construction is that the number of latent parameters we need to sample scales with the number of observations. It may be desirable to use alternative constructions in certain cases. Alternative methods of constructing a Dirichlet process can be employed via the following representations: - -Size-Biased Sampling Process - -$$ -j_k \sim \mathrm{Beta}(1, \alpha) \cdot \mathrm{surplus} -$$ - -Stick-Breaking Process -$$ -v_k \sim \mathrm{Beta}(1, \alpha) -$$ - -Chinese Restaurant Process -$$ -p(z_n = k | z_{1:n-1}) \propto \begin{cases} -\frac{m_k}{n-1+\alpha}, \text{ if } m_k > 0\\\ -\frac{\alpha}{n-1+\alpha} -\end{cases} -$$ - -For more details see [this article](https://www.stats.ox.ac.uk/%7Eteh/research/npbayes/Teh2010a.pdf). +--- +title: Probabilistic Modelling using the Infinite Mixture Model +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In many applications it is desirable to allow the model to adjust its complexity to the amount of data. Consider for example the task of assigning objects into clusters or groups. This task often involves the specification of the number of groups. However, often times it is not known beforehand how many groups exist. Moreover, in some applictions, e.g. modelling topics in text documents or grouping species, the number of examples per group is heavy tailed. This makes it impossible to predefine the number of groups and requiring the model to form new groups when data points from previously unseen groups are observed. + +A natural approach for such applications is the use of non-parametric models. This tutorial will introduce how to use the Dirichlet process in a mixture of infinitely many Gaussians using Turing. For further information on Bayesian nonparametrics and the Dirichlet process we refer to the [introduction by Zoubin Ghahramani](http://mlg.eng.cam.ac.uk/pub/pdf/Gha12.pdf) and the book "Fundamentals of Nonparametric Bayesian Inference" by Subhashis Ghosal and Aad van der Vaart. + +```{julia} +using Turing +``` + +## Mixture Model + +Before introducing infinite mixture models in Turing, we will briefly review the construction of finite mixture models. Subsequently, we will define how to use the [Chinese restaurant process](https://en.wikipedia.org/wiki/Chinese_restaurant_process) construction of a Dirichlet process for non-parametric clustering. + +#### Two-Component Model + +First, consider the simple case of a mixture model with two Gaussian components with fixed covariance. +The generative process of such a model can be written as: + +\begin{equation*} +\begin{aligned} +\pi_1 &\sim \mathrm{Beta}(a, b) \\ +\pi_2 &= 1-\pi_1 \\ +\mu_1 &\sim \mathrm{Normal}(\mu_0, \Sigma_0) \\ +\mu_2 &\sim \mathrm{Normal}(\mu_0, \Sigma_0) \\ +z_i &\sim \mathrm{Categorical}(\pi_1, \pi_2) \\ +x_i &\sim \mathrm{Normal}(\mu_{z_i}, \Sigma) +\end{aligned} +\end{equation*} + +where $\pi_1, \pi_2$ are the mixing weights of the mixture model, i.e. $\pi_1 + \pi_2 = 1$, and $z_i$ is a latent assignment of the observation $x_i$ to a component (Gaussian). + +We can implement this model in Turing for 1D data as follows: + +```{julia} +@model function two_model(x) + # Hyper-parameters + μ0 = 0.0 + σ0 = 1.0 + + # Draw weights. + π1 ~ Beta(1, 1) + π2 = 1 - π1 + + # Draw locations of the components. + μ1 ~ Normal(μ0, σ0) + μ2 ~ Normal(μ0, σ0) + + # Draw latent assignment. + z ~ Categorical([π1, π2]) + + # Draw observation from selected component. + if z == 1 + x ~ Normal(μ1, 1.0) + else + x ~ Normal(μ2, 1.0) + end +end +``` + +#### Finite Mixture Model + +If we have more than two components, this model can elegantly be extended using a Dirichlet distribution as prior for the mixing weights $\pi_1, \dots, \pi_K$. Note that the Dirichlet distribution is the multivariate generalization of the beta distribution. The resulting model can be written as: + +$$ +\begin{align} +(\pi_1, \dots, \pi_K) &\sim Dirichlet(K, \alpha) \\ +\mu_k &\sim \mathrm{Normal}(\mu_0, \Sigma_0), \;\; \forall k \\ +z &\sim Categorical(\pi_1, \dots, \pi_K) \\ +x &\sim \mathrm{Normal}(\mu_z, \Sigma) +\end{align} +$$ + +which resembles the model in the [Gaussian mixture model tutorial](https://turinglang.org/stable/tutorials/01-gaussian-mixture-model/) with a slightly different notation. + +## Infinite Mixture Model + +The question now arises, is there a generalization of a Dirichlet distribution for which the dimensionality $K$ is infinite, i.e. $K = \infty$? + +But first, to implement an infinite Gaussian mixture model in Turing, we first need to load the `Turing.RandomMeasures` module. `RandomMeasures` contains a variety of tools useful in nonparametrics. + +```{julia} +using Turing.RandomMeasures +``` + +We now will utilize the fact that one can integrate out the mixing weights in a Gaussian mixture model allowing us to arrive at the Chinese restaurant process construction. See Carl E. Rasmussen: [The Infinite Gaussian Mixture Model](https://www.seas.harvard.edu/courses/cs281/papers/rasmussen-1999a.pdf), NIPS (2000) for details. + +In fact, if the mixing weights are integrated out, the conditional prior for the latent variable $z$ is given by: + +$$ +p(z_i = k \mid z_{\not i}, \alpha) = \frac{n_k + \alpha K}{N - 1 + \alpha} +$$ + +where $z_{\not i}$ are the latent assignments of all observations except observation $i$. Note that we use $n_k$ to denote the number of observations at component $k$ excluding observation $i$. The parameter $\alpha$ is the concentration parameter of the Dirichlet distribution used as prior over the mixing weights. + +#### Chinese Restaurant Process + +To obtain the Chinese restaurant process construction, we can now derive the conditional prior if $K \rightarrow \infty$. + +For $n_k > 0$ we obtain: + +$$ +p(z_i = k \mid z_{\not i}, \alpha) = \frac{n_k}{N - 1 + \alpha} +$$ + +and for all infinitely many clusters that are empty (combined) we get: + +$$ +p(z_i = k \mid z_{\not i}, \alpha) = \frac{\alpha}{N - 1 + \alpha} +$$ + +Those equations show that the conditional prior for component assignments is proportional to the number of such observations, meaning that the Chinese restaurant process has a rich get richer property. + +To get a better understanding of this property, we can plot the cluster choosen by for each new observation drawn from the conditional prior. + +```{julia} +# Concentration parameter. +α = 10.0 + +# Random measure, e.g. Dirichlet process. +rpm = DirichletProcess(α) + +# Cluster assignments for each observation. +z = Vector{Int}() + +# Maximum number of observations we observe. +Nmax = 500 + +for i in 1:Nmax + # Number of observations per cluster. + K = isempty(z) ? 0 : maximum(z) + nk = Vector{Int}(map(k -> sum(z .== k), 1:K)) + + # Draw new assignment. + push!(z, rand(ChineseRestaurantProcess(rpm, nk))) +end +``` + +```{julia} +using Plots + +# Plot the cluster assignments over time +@gif for i in 1:Nmax + scatter( + collect(1:i), + z[1:i]; + markersize=2, + xlabel="observation (i)", + ylabel="cluster (k)", + legend=false, + ) +end +``` + +Further, we can see that the number of clusters is logarithmic in the number of observations and data points. This is a side-effect of the "rich-get-richer" phenomenon, i.e. we expect large clusters and thus the number of clusters has to be smaller than the number of observations. + +$$ +\mathbb{E}[K \mid N] \approx \alpha \cdot log \big(1 + \frac{N}{\alpha}\big) +$$ + +We can see from the equation that the concentration parameter $\alpha$ allows us to control the number of clusters formed *a priori*. + +In Turing we can implement an infinite Gaussian mixture model using the Chinese restaurant process construction of a Dirichlet process as follows: + +```{julia} +@model function infiniteGMM(x) + # Hyper-parameters, i.e. concentration parameter and parameters of H. + α = 1.0 + μ0 = 0.0 + σ0 = 1.0 + + # Define random measure, e.g. Dirichlet process. + rpm = DirichletProcess(α) + + # Define the base distribution, i.e. expected value of the Dirichlet process. + H = Normal(μ0, σ0) + + # Latent assignment. + z = tzeros(Int, length(x)) + + # Locations of the infinitely many clusters. + μ = tzeros(Float64, 0) + + for i in 1:length(x) + + # Number of clusters. + K = maximum(z) + nk = Vector{Int}(map(k -> sum(z .== k), 1:K)) + + # Draw the latent assignment. + z[i] ~ ChineseRestaurantProcess(rpm, nk) + + # Create a new cluster? + if z[i] > K + push!(μ, 0.0) + + # Draw location of new cluster. + μ[z[i]] ~ H + end + + # Draw observation. + x[i] ~ Normal(μ[z[i]], 1.0) + end +end +``` + +We can now use Turing to infer the assignments of some data points. First, we will create some random data that comes from three clusters, with means of 0, -5, and 10. + +```{julia} +using Plots, Random + +# Generate some test data. +Random.seed!(1) +data = vcat(randn(10), randn(10) .- 5, randn(10) .+ 10) +data .-= mean(data) +data /= std(data); +``` + +Next, we'll sample from our posterior using SMC. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +# MCMC sampling +Random.seed!(2) +iterations = 1000 +model_fun = infiniteGMM(data); +chain = sample(model_fun, SMC(), iterations); +``` + +Finally, we can plot the number of clusters in each sample. + +```{julia} +# Extract the number of clusters for each sample of the Markov chain. +k = map( + t -> length(unique(vec(chain[t, MCMCChains.namesingroup(chain, :z), :].value))), + 1:iterations, +); + +# Visualize the number of clusters. +plot(k; xlabel="Iteration", ylabel="Number of clusters", label="Chain 1") +``` + +If we visualize the histogram of the number of clusters sampled from our posterior, we observe that the model seems to prefer 3 clusters, which is the true number of clusters. Note that the number of clusters in a Dirichlet process mixture model is not limited a priori and will grow to infinity with probability one. However, if conditioned on data the posterior will concentrate on a finite number of clusters enforcing the resulting model to have a finite amount of clusters. It is, however, not given that the posterior of a Dirichlet process Gaussian mixture model converges to the true number of clusters, given that data comes from a finite mixture model. See Jeffrey Miller and Matthew Harrison: [A simple example of Dirichlet process mixture inconsitency for the number of components](https://arxiv.org/pdf/1301.2708.pdf) for details. + +```{julia} +histogram(k; xlabel="Number of clusters", legend=false) +``` + +One issue with the Chinese restaurant process construction is that the number of latent parameters we need to sample scales with the number of observations. It may be desirable to use alternative constructions in certain cases. Alternative methods of constructing a Dirichlet process can be employed via the following representations: + +Size-Biased Sampling Process + +$$ +j_k \sim \mathrm{Beta}(1, \alpha) \cdot \mathrm{surplus} +$$ + +Stick-Breaking Process +$$ +v_k \sim \mathrm{Beta}(1, \alpha) +$$ + +Chinese Restaurant Process +$$ +p(z_n = k | z_{1:n-1}) \propto \begin{cases} +\frac{m_k}{n-1+\alpha}, \text{ if } m_k > 0\\\ +\frac{\alpha}{n-1+\alpha} +\end{cases} +$$ + +For more details see [this article](https://www.stats.ox.ac.uk/%7Eteh/research/npbayes/Teh2010a.pdf). diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/07-poisson-regression/Project.toml b/tutorials/07-poisson-regression/Project.toml old mode 100644 new mode 100755 index a625e8cc4..358963df3 --- a/tutorials/07-poisson-regression/Project.toml +++ b/tutorials/07-poisson-regression/Project.toml @@ -1,9 +1,9 @@ -[deps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/07-poisson-regression/index.qmd b/tutorials/07-poisson-regression/index.qmd old mode 100644 new mode 100755 index 6f45e3ca0..e4e8ee3d3 --- a/tutorials/07-poisson-regression/index.qmd +++ b/tutorials/07-poisson-regression/index.qmd @@ -1,215 +1,234 @@ ---- -title: Bayesian Poisson Regression -engine: julia ---- - -This notebook is ported from the [example notebook](https://www.pymc.io/projects/examples/en/latest/generalized_linear_models/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. - -[Poisson Regression](https://en.wikipedia.org/wiki/Poisson_regression) is a technique commonly used to model count data. -Some of the applications include predicting the number of people defaulting on their loans or the number of cars running on a highway on a given day. -This example describes a method to implement the Bayesian version of this technique using Turing. - -We will generate the dataset that we will be working on which describes the relationship between number of times a person sneezes during the day with his alcohol consumption and medicinal intake. - -We start by importing the required libraries. - -```{julia} -#Import Turing, Distributions and DataFrames -using Turing, Distributions, DataFrames, Distributed - -# Import MCMCChain, Plots, and StatsPlots for visualizations and diagnostics. -using MCMCChains, Plots, StatsPlots - -# Set a seed for reproducibility. -using Random -Random.seed!(12); -``` - -# Generating data - -We start off by creating a toy dataset. We take the case of a person who takes medicine to prevent excessive sneezing. Alcohol consumption increases the rate of sneezing for that person. Thus, the two factors affecting the number of sneezes in a given day are alcohol consumption and whether the person has taken his medicine. Both these variable are taken as boolean valued while the number of sneezes will be a count valued variable. We also take into consideration that the interaction between the two boolean variables will affect the number of sneezes - -5 random rows are printed from the generated data to get a gist of the data generated. - -```{julia} -theta_noalcohol_meds = 1 # no alcohol, took medicine -theta_alcohol_meds = 3 # alcohol, took medicine -theta_noalcohol_nomeds = 6 # no alcohol, no medicine -theta_alcohol_nomeds = 36 # alcohol, no medicine - -# no of samples for each of the above cases -q = 100 - -#Generate data from different Poisson distributions -noalcohol_meds = Poisson(theta_noalcohol_meds) -alcohol_meds = Poisson(theta_alcohol_meds) -noalcohol_nomeds = Poisson(theta_noalcohol_nomeds) -alcohol_nomeds = Poisson(theta_alcohol_nomeds) - -nsneeze_data = vcat( - rand(noalcohol_meds, q), - rand(alcohol_meds, q), - rand(noalcohol_nomeds, q), - rand(alcohol_nomeds, q), -) -alcohol_data = vcat(zeros(q), ones(q), zeros(q), ones(q)) -meds_data = vcat(zeros(q), zeros(q), ones(q), ones(q)) - -df = DataFrame(; - nsneeze=nsneeze_data, - alcohol_taken=alcohol_data, - nomeds_taken=meds_data, - product_alcohol_meds=meds_data .* alcohol_data, -) -df[sample(1:nrow(df), 5; replace=false), :] -``` - -# Visualisation of the dataset - -We plot the distribution of the number of sneezes for the 4 different cases taken above. As expected, the person sneezes the most when he has taken alcohol and not taken his medicine. He sneezes the least when he doesn't consume alcohol and takes his medicine. - -```{julia} -# Data Plotting - -p1 = Plots.histogram( - df[(df[:, :alcohol_taken] .== 0) .& (df[:, :nomeds_taken] .== 0), 1]; - title="no_alcohol+meds", -) -p2 = Plots.histogram( - (df[(df[:, :alcohol_taken] .== 1) .& (df[:, :nomeds_taken] .== 0), 1]); - title="alcohol+meds", -) -p3 = Plots.histogram( - (df[(df[:, :alcohol_taken] .== 0) .& (df[:, :nomeds_taken] .== 1), 1]); - title="no_alcohol+no_meds", -) -p4 = Plots.histogram( - (df[(df[:, :alcohol_taken] .== 1) .& (df[:, :nomeds_taken] .== 1), 1]); - title="alcohol+no_meds", -) -plot(p1, p2, p3, p4; layout=(2, 2), legend=false) -``` - -We must convert our `DataFrame` data into the `Matrix` form as the manipulations that we are about are designed to work with `Matrix` data. We also separate the features from the labels which will be later used by the Turing sampler to generate samples from the posterior. - -```{julia} -# Convert the DataFrame object to matrices. -data = Matrix(df[:, [:alcohol_taken, :nomeds_taken, :product_alcohol_meds]]) -data_labels = df[:, :nsneeze] -data -``` - -We must recenter our data about 0 to help the Turing sampler in initialising the parameter estimates. So, normalising the data in each column by subtracting the mean and dividing by the standard deviation: - -```{julia} -# Rescale our matrices. -data = (data .- mean(data; dims=1)) ./ std(data; dims=1) -``` - -# Declaring the Model: Poisson Regression - -Our model, `poisson_regression` takes four arguments: - - - `x` is our set of independent variables; - - `y` is the element we want to predict; - - `n` is the number of observations we have; and - - `σ²` is the standard deviation we want to assume for our priors. - -Within the model, we create four coefficients (`b0`, `b1`, `b2`, and `b3`) and assign a prior of normally distributed with means of zero and standard deviations of `σ²`. We want to find values of these four coefficients to predict any given `y`. - -Intuitively, we can think of the coefficients as: - - - `b1` is the coefficient which represents the effect of taking alcohol on the number of sneezes; - - `b2` is the coefficient which represents the effect of taking in no medicines on the number of sneezes; - - `b3` is the coefficient which represents the effect of interaction between taking alcohol and no medicine on the number of sneezes; - -The `for` block creates a variable `theta` which is the weighted combination of the input features. We have defined the priors on these weights above. We then observe the likelihood of calculating `theta` given the actual label, `y[i]`. - -```{julia} -# Bayesian poisson regression (LR) -@model function poisson_regression(x, y, n, σ²) - b0 ~ Normal(0, σ²) - b1 ~ Normal(0, σ²) - b2 ~ Normal(0, σ²) - b3 ~ Normal(0, σ²) - for i in 1:n - theta = b0 + b1 * x[i, 1] + b2 * x[i, 2] + b3 * x[i, 3] - y[i] ~ Poisson(exp(theta)) - end -end; -``` - -# Sampling from the posterior - -We use the `NUTS` sampler to sample values from the posterior. We run multiple chains using the `MCMCThreads()` function to nullify the effect of a problematic chain. We then use the Gelman, Rubin, and Brooks Diagnostic to check the convergence of these multiple chains. - -```{julia} -# Retrieve the number of observations. -n, _ = size(data) - -# Sample using NUTS. - -num_chains = 4 -m = poisson_regression(data, data_labels, n, 10) -chain = sample(m, NUTS(), MCMCThreads(), 2_500, num_chains; discard_adapt=false, progress=false) -``` - -# Viewing the Diagnostics - -We use the Gelman, Rubin, and Brooks Diagnostic to check whether our chains have converged. Note that we require multiple chains to use this diagnostic which analyses the difference between these multiple chains. - -We expect the chains to have converged. This is because we have taken sufficient number of iterations (1500) for the NUTS sampler. However, in case the test fails, then we will have to take a larger number of iterations, resulting in longer computation time. - -```{julia} -gelmandiag(chain) -``` - -From the above diagnostic, we can conclude that the chains have converged because the PSRF values of the coefficients are close to 1. - -So, we have obtained the posterior distributions of the parameters. We transform the coefficients and recover theta values by taking the exponent of the meaned values of the coefficients `b0`, `b1`, `b2` and `b3`. We take the exponent of the means to get a better comparison of the relative values of the coefficients. We then compare this with the intuitive meaning that was described earlier. - -```{julia} -# Taking the first chain -c1 = chain[:, :, 1] - -# Calculating the exponentiated means -b0_exp = exp(mean(c1[:b0])) -b1_exp = exp(mean(c1[:b1])) -b2_exp = exp(mean(c1[:b2])) -b3_exp = exp(mean(c1[:b3])) - -print("The exponent of the meaned values of the weights (or coefficients are): \n") -println("b0: ", b0_exp) -println("b1: ", b1_exp) -println("b2: ", b2_exp) -println("b3: ", b3_exp) -print("The posterior distributions obtained after sampling can be visualised as :\n") -``` - -Visualising the posterior by plotting it: - -```{julia} -plot(chain) -``` - -# Interpreting the Obtained Mean Values - -The exponentiated mean of the coefficient `b1` is roughly half of that of `b2`. This makes sense because in the data that we generated, the number of sneezes was more sensitive to the medicinal intake as compared to the alcohol consumption. We also get a weaker dependence on the interaction between the alcohol consumption and the medicinal intake as can be seen from the value of `b3`. - -# Removing the Warmup Samples - -As can be seen from the plots above, the parameters converge to their final distributions after a few iterations. -The initial values during the warmup phase increase the standard deviations of the parameters and are not required after we get the desired distributions. -Thus, we remove these warmup values and once again view the diagnostics. -To remove these warmup values, we take all values except the first 200. -This is because we set the second parameter of the NUTS sampler (which is the number of adaptations) to be equal to 200. - -```{julia} -chains_new = chain[201:end, :, :] -``` - -```{julia} -plot(chains_new) -``` - -As can be seen from the numeric values and the plots above, the standard deviation values have decreased and all the plotted values are from the estimated posteriors. The exponentiated mean values, with the warmup samples removed, have not changed by much and they are still in accordance with their intuitive meanings as described earlier. +--- +title: Bayesian Poisson Regression +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +This notebook is ported from the [example notebook](https://www.pymc.io/projects/examples/en/latest/generalized_linear_models/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. + +[Poisson Regression](https://en.wikipedia.org/wiki/Poisson_regression) is a technique commonly used to model count data. +Some of the applications include predicting the number of people defaulting on their loans or the number of cars running on a highway on a given day. +This example describes a method to implement the Bayesian version of this technique using Turing. + +We will generate the dataset that we will be working on which describes the relationship between number of times a person sneezes during the day with his alcohol consumption and medicinal intake. + +We start by importing the required libraries. + +```{julia} +#Import Turing, Distributions and DataFrames +using Turing, Distributions, DataFrames, Distributed + +# Import MCMCChain, Plots, and StatsPlots for visualizations and diagnostics. +using MCMCChains, Plots, StatsPlots + +# Set a seed for reproducibility. +using Random +Random.seed!(12); +``` + +# Generating data + +We start off by creating a toy dataset. We take the case of a person who takes medicine to prevent excessive sneezing. Alcohol consumption increases the rate of sneezing for that person. Thus, the two factors affecting the number of sneezes in a given day are alcohol consumption and whether the person has taken his medicine. Both these variable are taken as boolean valued while the number of sneezes will be a count valued variable. We also take into consideration that the interaction between the two boolean variables will affect the number of sneezes + +5 random rows are printed from the generated data to get a gist of the data generated. + +```{julia} +theta_noalcohol_meds = 1 # no alcohol, took medicine +theta_alcohol_meds = 3 # alcohol, took medicine +theta_noalcohol_nomeds = 6 # no alcohol, no medicine +theta_alcohol_nomeds = 36 # alcohol, no medicine + +# no of samples for each of the above cases +q = 100 + +#Generate data from different Poisson distributions +noalcohol_meds = Poisson(theta_noalcohol_meds) +alcohol_meds = Poisson(theta_alcohol_meds) +noalcohol_nomeds = Poisson(theta_noalcohol_nomeds) +alcohol_nomeds = Poisson(theta_alcohol_nomeds) + +nsneeze_data = vcat( + rand(noalcohol_meds, q), + rand(alcohol_meds, q), + rand(noalcohol_nomeds, q), + rand(alcohol_nomeds, q), +) +alcohol_data = vcat(zeros(q), ones(q), zeros(q), ones(q)) +meds_data = vcat(zeros(q), zeros(q), ones(q), ones(q)) + +df = DataFrame(; + nsneeze=nsneeze_data, + alcohol_taken=alcohol_data, + nomeds_taken=meds_data, + product_alcohol_meds=meds_data .* alcohol_data, +) +df[sample(1:nrow(df), 5; replace=false), :] +``` + +# Visualisation of the dataset + +We plot the distribution of the number of sneezes for the 4 different cases taken above. As expected, the person sneezes the most when he has taken alcohol and not taken his medicine. He sneezes the least when he doesn't consume alcohol and takes his medicine. + +```{julia} +# Data Plotting + +p1 = Plots.histogram( + df[(df[:, :alcohol_taken] .== 0) .& (df[:, :nomeds_taken] .== 0), 1]; + title="no_alcohol+meds", +) +p2 = Plots.histogram( + (df[(df[:, :alcohol_taken] .== 1) .& (df[:, :nomeds_taken] .== 0), 1]); + title="alcohol+meds", +) +p3 = Plots.histogram( + (df[(df[:, :alcohol_taken] .== 0) .& (df[:, :nomeds_taken] .== 1), 1]); + title="no_alcohol+no_meds", +) +p4 = Plots.histogram( + (df[(df[:, :alcohol_taken] .== 1) .& (df[:, :nomeds_taken] .== 1), 1]); + title="alcohol+no_meds", +) +plot(p1, p2, p3, p4; layout=(2, 2), legend=false) +``` + +We must convert our `DataFrame` data into the `Matrix` form as the manipulations that we are about are designed to work with `Matrix` data. We also separate the features from the labels which will be later used by the Turing sampler to generate samples from the posterior. + +```{julia} +# Convert the DataFrame object to matrices. +data = Matrix(df[:, [:alcohol_taken, :nomeds_taken, :product_alcohol_meds]]) +data_labels = df[:, :nsneeze] +data +``` + +We must recenter our data about 0 to help the Turing sampler in initialising the parameter estimates. So, normalising the data in each column by subtracting the mean and dividing by the standard deviation: + +```{julia} +# Rescale our matrices. +data = (data .- mean(data; dims=1)) ./ std(data; dims=1) +``` + +# Declaring the Model: Poisson Regression + +Our model, `poisson_regression` takes four arguments: + + - `x` is our set of independent variables; + - `y` is the element we want to predict; + - `n` is the number of observations we have; and + - `σ²` is the standard deviation we want to assume for our priors. + +Within the model, we create four coefficients (`b0`, `b1`, `b2`, and `b3`) and assign a prior of normally distributed with means of zero and standard deviations of `σ²`. We want to find values of these four coefficients to predict any given `y`. + +Intuitively, we can think of the coefficients as: + + - `b1` is the coefficient which represents the effect of taking alcohol on the number of sneezes; + - `b2` is the coefficient which represents the effect of taking in no medicines on the number of sneezes; + - `b3` is the coefficient which represents the effect of interaction between taking alcohol and no medicine on the number of sneezes; + +The `for` block creates a variable `theta` which is the weighted combination of the input features. We have defined the priors on these weights above. We then observe the likelihood of calculating `theta` given the actual label, `y[i]`. + +```{julia} +# Bayesian poisson regression (LR) +@model function poisson_regression(x, y, n, σ²) + b0 ~ Normal(0, σ²) + b1 ~ Normal(0, σ²) + b2 ~ Normal(0, σ²) + b3 ~ Normal(0, σ²) + for i in 1:n + theta = b0 + b1 * x[i, 1] + b2 * x[i, 2] + b3 * x[i, 3] + y[i] ~ Poisson(exp(theta)) + end +end; +``` + +# Sampling from the posterior + +We use the `NUTS` sampler to sample values from the posterior. We run multiple chains using the `MCMCThreads()` function to nullify the effect of a problematic chain. We then use the Gelman, Rubin, and Brooks Diagnostic to check the convergence of these multiple chains. + +```{julia} +#| output: false +# Retrieve the number of observations. +n, _ = size(data) + +# Sample using NUTS. + +num_chains = 4 +m = poisson_regression(data, data_labels, n, 10) +chain = sample(m, NUTS(), MCMCThreads(), 2_500, num_chains; discard_adapt=false, progress=false) +``` + +```{julia} +#| echo: false +chain +``` + +::: {.callout-warning collapse="true"} +## Sampling With Multiple Threads +The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains +will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) +::: + +# Viewing the Diagnostics + +We use the Gelman, Rubin, and Brooks Diagnostic to check whether our chains have converged. Note that we require multiple chains to use this diagnostic which analyses the difference between these multiple chains. + +We expect the chains to have converged. This is because we have taken sufficient number of iterations (1500) for the NUTS sampler. However, in case the test fails, then we will have to take a larger number of iterations, resulting in longer computation time. + +```{julia} +gelmandiag(chain) +``` + +From the above diagnostic, we can conclude that the chains have converged because the PSRF values of the coefficients are close to 1. + +So, we have obtained the posterior distributions of the parameters. We transform the coefficients and recover theta values by taking the exponent of the meaned values of the coefficients `b0`, `b1`, `b2` and `b3`. We take the exponent of the means to get a better comparison of the relative values of the coefficients. We then compare this with the intuitive meaning that was described earlier. + +```{julia} +# Taking the first chain +c1 = chain[:, :, 1] + +# Calculating the exponentiated means +b0_exp = exp(mean(c1[:b0])) +b1_exp = exp(mean(c1[:b1])) +b2_exp = exp(mean(c1[:b2])) +b3_exp = exp(mean(c1[:b3])) + +print("The exponent of the meaned values of the weights (or coefficients are): \n") +println("b0: ", b0_exp) +println("b1: ", b1_exp) +println("b2: ", b2_exp) +println("b3: ", b3_exp) +print("The posterior distributions obtained after sampling can be visualised as :\n") +``` + +Visualising the posterior by plotting it: + +```{julia} +plot(chain) +``` + +# Interpreting the Obtained Mean Values + +The exponentiated mean of the coefficient `b1` is roughly half of that of `b2`. This makes sense because in the data that we generated, the number of sneezes was more sensitive to the medicinal intake as compared to the alcohol consumption. We also get a weaker dependence on the interaction between the alcohol consumption and the medicinal intake as can be seen from the value of `b3`. + +# Removing the Warmup Samples + +As can be seen from the plots above, the parameters converge to their final distributions after a few iterations. +The initial values during the warmup phase increase the standard deviations of the parameters and are not required after we get the desired distributions. +Thus, we remove these warmup values and once again view the diagnostics. +To remove these warmup values, we take all values except the first 200. +This is because we set the second parameter of the NUTS sampler (which is the number of adaptations) to be equal to 200. + +```{julia} +chains_new = chain[201:end, :, :] +``` + +```{julia} +plot(chains_new) +``` + +As can be seen from the numeric values and the plots above, the standard deviation values have decreased and all the plotted values are from the estimated posteriors. The exponentiated mean values, with the warmup samples removed, have not changed by much and they are still in accordance with their intuitive meanings as described earlier. diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/08-multinomial-logistic-regression/Project.toml b/tutorials/08-multinomial-logistic-regression/Project.toml old mode 100644 new mode 100755 diff --git a/tutorials/08-multinomial-logistic-regression/index.qmd b/tutorials/08-multinomial-logistic-regression/index.qmd old mode 100644 new mode 100755 index a979474f9..7be20d437 --- a/tutorials/08-multinomial-logistic-regression/index.qmd +++ b/tutorials/08-multinomial-logistic-regression/index.qmd @@ -1,215 +1,233 @@ ---- -title: Bayesian Multinomial Logistic Regression -engine: julia ---- - -[Multinomial logistic regression](https://en.wikipedia.org/wiki/Multinomial_logistic_regression) is an extension of logistic regression. Logistic regression is used to model problems in which there are exactly two possible discrete outcomes. Multinomial logistic regression is used to model problems in which there are two or more possible discrete outcomes. - -In our example, we'll be using the iris dataset. The iris multiclass problem aims to predict the species of a flower given measurements (in centimeters) of sepal length and width and petal length and width. There are three possible species: Iris setosa, Iris versicolor, and Iris virginica. - -To start, let's import all the libraries we'll need. - -```{julia} -# Load Turing. -using Turing - -# Load RDatasets. -using RDatasets - -# Load StatsPlots for visualizations and diagnostics. -using StatsPlots - -# Functionality for splitting and normalizing the data. -using MLDataUtils: shuffleobs, splitobs, rescale! - -# We need a softmax function which is provided by NNlib. -using NNlib: softmax - -# Functionality for constructing arrays with identical elements efficiently. -using FillArrays - -# Functionality for working with scaled identity matrices. -using LinearAlgebra - -# Set a seed for reproducibility. -using Random -Random.seed!(0); -``` - -## Data Cleaning & Set Up - -Now we're going to import our dataset. Twenty rows of the dataset are shown below so you can get a good feel for what kind of data we have. - -```{julia} -# Import the "iris" dataset. -data = RDatasets.dataset("datasets", "iris"); - -# Show twenty random rows. -data[rand(1:size(data, 1), 20), :] -``` - -In this data set, the outcome `Species` is currently coded as a string. We convert it to a numerical value by using indices `1`, `2`, and `3` to indicate species `setosa`, `versicolor`, and `virginica`, respectively. - -```{julia} -# Recode the `Species` column. -species = ["setosa", "versicolor", "virginica"] -data[!, :Species_index] = indexin(data[!, :Species], species) - -# Show twenty random rows of the new species columns -data[rand(1:size(data, 1), 20), [:Species, :Species_index]] -``` - -After we've done that tidying, it's time to split our dataset into training and testing sets, and separate the features and target from the data. Additionally, we must rescale our feature variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. - -```{julia} -# Split our dataset 50%/50% into training/test sets. -trainset, testset = splitobs(shuffleobs(data), 0.5) - -# Define features and target. -features = [:SepalLength, :SepalWidth, :PetalLength, :PetalWidth] -target = :Species_index - -# Turing requires data in matrix and vector form. -train_features = Matrix(trainset[!, features]) -test_features = Matrix(testset[!, features]) -train_target = trainset[!, target] -test_target = testset[!, target] - -# Standardize the features. -μ, σ = rescale!(train_features; obsdim=1) -rescale!(test_features, μ, σ; obsdim=1); -``` - -## Model Declaration - -Finally, we can define our model `logistic_regression`. It is a function that takes three arguments where - - - `x` is our set of independent variables; - - `y` is the element we want to predict; - - `σ` is the standard deviation we want to assume for our priors. - -We select the `setosa` species as the baseline class (the choice does not matter). Then we create the intercepts and vectors of coefficients for the other classes against that baseline. More concretely, we create scalar intercepts `intercept_versicolor` and `intersept_virginica` and coefficient vectors `coefficients_versicolor` and `coefficients_virginica` with four coefficients each for the features `SepalLength`, `SepalWidth`, `PetalLength` and `PetalWidth`. We assume a normal distribution with mean zero and standard deviation `σ` as prior for each scalar parameter. We want to find the posterior distribution of these, in total ten, parameters to be able to predict the species for any given set of features. - -```{julia} -# Bayesian multinomial logistic regression -@model function logistic_regression(x, y, σ) - n = size(x, 1) - length(y) == n || - throw(DimensionMismatch("number of observations in `x` and `y` is not equal")) - - # Priors of intercepts and coefficients. - intercept_versicolor ~ Normal(0, σ) - intercept_virginica ~ Normal(0, σ) - coefficients_versicolor ~ MvNormal(Zeros(4), σ^2 * I) - coefficients_virginica ~ MvNormal(Zeros(4), σ^2 * I) - - # Compute the likelihood of the observations. - values_versicolor = intercept_versicolor .+ x * coefficients_versicolor - values_virginica = intercept_virginica .+ x * coefficients_virginica - for i in 1:n - # the 0 corresponds to the base category `setosa` - v = softmax([0, values_versicolor[i], values_virginica[i]]) - y[i] ~ Categorical(v) - end -end; -``` - -## Sampling - -Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -m = logistic_regression(train_features, train_target, 1) -chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) -``` - -Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. - -```{julia} -plot(chain) -``` - -Looks good! - -We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our multinomial logistic regression. The corner function requires MCMCChains and StatsPlots. - -```{julia} -#| eval: false -corner( - chain, - MCMCChains.namesingroup(chain, :coefficients_versicolor); - label=[string(i) for i in 1:4], -) -``` - -```{julia} -#| eval: false -corner( - chain, - MCMCChains.namesingroup(chain, :coefficients_virginica); - label=[string(i) for i in 1:4], -) -``` - -Fortunately the corner plots appear to demonstrate unimodal distributions for each of our parameters, so it should be straightforward to take the means of each parameter's sampled values to estimate our model to make predictions. - -## Making Predictions - -How do we test how well the model actually predicts which of the three classes an iris flower belongs to? We need to build a `prediction` function that takes the test dataset and runs it through the average parameter calculated during sampling. - -The `prediction` function below takes a `Matrix` and a `Chains` object. It computes the mean of the sampled parameters and calculates the species with the highest probability for each observation. Note that we do not have to evaluate the `softmax` function since it does not affect the order of its inputs. - -```{julia} -function prediction(x::Matrix, chain) - # Pull the means from each parameter's sampled values in the chain. - intercept_versicolor = mean(chain, :intercept_versicolor) - intercept_virginica = mean(chain, :intercept_virginica) - coefficients_versicolor = [ - mean(chain, k) for k in MCMCChains.namesingroup(chain, :coefficients_versicolor) - ] - coefficients_virginica = [ - mean(chain, k) for k in MCMCChains.namesingroup(chain, :coefficients_virginica) - ] - - # Compute the index of the species with the highest probability for each observation. - values_versicolor = intercept_versicolor .+ x * coefficients_versicolor - values_virginica = intercept_virginica .+ x * coefficients_virginica - species_indices = [ - argmax((0, x, y)) for (x, y) in zip(values_versicolor, values_virginica) - ] - - return species_indices -end; -``` - -Let's see how we did! We run the test matrix through the prediction function, and compute the accuracy for our prediction. - -```{julia} -# Make the predictions. -predictions = prediction(test_features, chain) - -# Calculate accuracy for our test set. -mean(predictions .== testset[!, :Species_index]) -``` - -Perhaps more important is to see the accuracy per class. - -```{julia} -for s in 1:3 - rows = testset[!, :Species_index] .== s - println("Number of `", species[s], "`: ", count(rows)) - println( - "Percentage of `", - species[s], - "` predicted correctly: ", - mean(predictions[rows] .== testset[rows, :Species_index]), - ) -end -``` - -This tutorial has demonstrated how to use Turing to perform Bayesian multinomial logistic regression. +--- +title: Bayesian Multinomial Logistic Regression +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +[Multinomial logistic regression](https://en.wikipedia.org/wiki/Multinomial_logistic_regression) is an extension of logistic regression. Logistic regression is used to model problems in which there are exactly two possible discrete outcomes. Multinomial logistic regression is used to model problems in which there are two or more possible discrete outcomes. + +In our example, we'll be using the iris dataset. The iris multiclass problem aims to predict the species of a flower given measurements (in centimeters) of sepal length and width and petal length and width. There are three possible species: Iris setosa, Iris versicolor, and Iris virginica. + +To start, let's import all the libraries we'll need. + +```{julia} +# Load Turing. +using Turing + +# Load RDatasets. +using RDatasets + +# Load StatsPlots for visualizations and diagnostics. +using StatsPlots + +# Functionality for splitting and normalizing the data. +using MLDataUtils: shuffleobs, splitobs, rescale! + +# We need a softmax function which is provided by NNlib. +using NNlib: softmax + +# Functionality for constructing arrays with identical elements efficiently. +using FillArrays + +# Functionality for working with scaled identity matrices. +using LinearAlgebra + +# Set a seed for reproducibility. +using Random +Random.seed!(0); +``` + +## Data Cleaning & Set Up + +Now we're going to import our dataset. Twenty rows of the dataset are shown below so you can get a good feel for what kind of data we have. + +```{julia} +# Import the "iris" dataset. +data = RDatasets.dataset("datasets", "iris"); + +# Show twenty random rows. +data[rand(1:size(data, 1), 20), :] +``` + +In this data set, the outcome `Species` is currently coded as a string. We convert it to a numerical value by using indices `1`, `2`, and `3` to indicate species `setosa`, `versicolor`, and `virginica`, respectively. + +```{julia} +# Recode the `Species` column. +species = ["setosa", "versicolor", "virginica"] +data[!, :Species_index] = indexin(data[!, :Species], species) + +# Show twenty random rows of the new species columns +data[rand(1:size(data, 1), 20), [:Species, :Species_index]] +``` + +After we've done that tidying, it's time to split our dataset into training and testing sets, and separate the features and target from the data. Additionally, we must rescale our feature variables so that they are centered around zero by subtracting each column by the mean and dividing it by the standard deviation. Without this step, Turing's sampler will have a hard time finding a place to start searching for parameter estimates. + +```{julia} +# Split our dataset 50%/50% into training/test sets. +trainset, testset = splitobs(shuffleobs(data), 0.5) + +# Define features and target. +features = [:SepalLength, :SepalWidth, :PetalLength, :PetalWidth] +target = :Species_index + +# Turing requires data in matrix and vector form. +train_features = Matrix(trainset[!, features]) +test_features = Matrix(testset[!, features]) +train_target = trainset[!, target] +test_target = testset[!, target] + +# Standardize the features. +μ, σ = rescale!(train_features; obsdim=1) +rescale!(test_features, μ, σ; obsdim=1); +``` + +## Model Declaration + +Finally, we can define our model `logistic_regression`. It is a function that takes three arguments where + + - `x` is our set of independent variables; + - `y` is the element we want to predict; + - `σ` is the standard deviation we want to assume for our priors. + +We select the `setosa` species as the baseline class (the choice does not matter). Then we create the intercepts and vectors of coefficients for the other classes against that baseline. More concretely, we create scalar intercepts `intercept_versicolor` and `intersept_virginica` and coefficient vectors `coefficients_versicolor` and `coefficients_virginica` with four coefficients each for the features `SepalLength`, `SepalWidth`, `PetalLength` and `PetalWidth`. We assume a normal distribution with mean zero and standard deviation `σ` as prior for each scalar parameter. We want to find the posterior distribution of these, in total ten, parameters to be able to predict the species for any given set of features. + +```{julia} +# Bayesian multinomial logistic regression +@model function logistic_regression(x, y, σ) + n = size(x, 1) + length(y) == n || + throw(DimensionMismatch("number of observations in `x` and `y` is not equal")) + + # Priors of intercepts and coefficients. + intercept_versicolor ~ Normal(0, σ) + intercept_virginica ~ Normal(0, σ) + coefficients_versicolor ~ MvNormal(Zeros(4), σ^2 * I) + coefficients_virginica ~ MvNormal(Zeros(4), σ^2 * I) + + # Compute the likelihood of the observations. + values_versicolor = intercept_versicolor .+ x * coefficients_versicolor + values_virginica = intercept_virginica .+ x * coefficients_virginica + for i in 1:n + # the 0 corresponds to the base category `setosa` + v = softmax([0, values_versicolor[i], values_virginica[i]]) + y[i] ~ Categorical(v) + end +end; +``` + +## Sampling + +Now we can run our sampler. This time we'll use [`NUTS`](https://turinglang.org/stable/docs/library/#Turing.Inference.NUTS) to sample from our posterior. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +#| output: false +m = logistic_regression(train_features, train_target, 1) +chain = sample(m, NUTS(), MCMCThreads(), 1_500, 3) +``` + + +```{julia} +#| echo: false +chain +``` + +::: {.callout-warning collapse="true"} +## Sampling With Multiple Threads +The `sample()` call above assumes that you have at least `nchains` threads available in your Julia instance. If you do not, the multiple chains +will run sequentially, and you may notice a warning. For more information, see [the Turing documentation on sampling multiple chains.](https://turinglang.org/dev/docs/using-turing/guide/#sampling-multiple-chains) +::: + +Since we ran multiple chains, we may as well do a spot check to make sure each chain converges around similar points. + +```{julia} +plot(chain) +``` + +Looks good! + +We can also use the `corner` function from MCMCChains to show the distributions of the various parameters of our multinomial logistic regression. The corner function requires MCMCChains and StatsPlots. + +```{julia} +corner( + chain, + MCMCChains.namesingroup(chain, :coefficients_versicolor); + label=[string(i) for i in 1:4], +) +``` + +```{julia} +corner( + chain, + MCMCChains.namesingroup(chain, :coefficients_virginica); + label=[string(i) for i in 1:4], +) +``` + +Fortunately the corner plots appear to demonstrate unimodal distributions for each of our parameters, so it should be straightforward to take the means of each parameter's sampled values to estimate our model to make predictions. + +## Making Predictions + +How do we test how well the model actually predicts which of the three classes an iris flower belongs to? We need to build a `prediction` function that takes the test dataset and runs it through the average parameter calculated during sampling. + +The `prediction` function below takes a `Matrix` and a `Chains` object. It computes the mean of the sampled parameters and calculates the species with the highest probability for each observation. Note that we do not have to evaluate the `softmax` function since it does not affect the order of its inputs. + +```{julia} +function prediction(x::Matrix, chain) + # Pull the means from each parameter's sampled values in the chain. + intercept_versicolor = mean(chain, :intercept_versicolor) + intercept_virginica = mean(chain, :intercept_virginica) + coefficients_versicolor = [ + mean(chain, k) for k in MCMCChains.namesingroup(chain, :coefficients_versicolor) + ] + coefficients_virginica = [ + mean(chain, k) for k in MCMCChains.namesingroup(chain, :coefficients_virginica) + ] + + # Compute the index of the species with the highest probability for each observation. + values_versicolor = intercept_versicolor .+ x * coefficients_versicolor + values_virginica = intercept_virginica .+ x * coefficients_virginica + species_indices = [ + argmax((0, x, y)) for (x, y) in zip(values_versicolor, values_virginica) + ] + + return species_indices +end; +``` + +Let's see how we did! We run the test matrix through the prediction function, and compute the accuracy for our prediction. + +```{julia} +# Make the predictions. +predictions = prediction(test_features, chain) + +# Calculate accuracy for our test set. +mean(predictions .== testset[!, :Species_index]) +``` + +Perhaps more important is to see the accuracy per class. + +```{julia} +for s in 1:3 + rows = testset[!, :Species_index] .== s + println("Number of `", species[s], "`: ", count(rows)) + println( + "Percentage of `", + species[s], + "` predicted correctly: ", + mean(predictions[rows] .== testset[rows, :Species_index]), + ) +end +``` + +This tutorial has demonstrated how to use Turing to perform Bayesian multinomial logistic regression. diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/09-variational-inference/Project.toml b/tutorials/09-variational-inference/Project.toml old mode 100644 new mode 100755 index a0ce2c3e4..f00b24f56 --- a/tutorials/09-variational-inference/Project.toml +++ b/tutorials/09-variational-inference/Project.toml @@ -1,13 +1,13 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" -GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" diff --git a/tutorials/09-variational-inference/index.qmd b/tutorials/09-variational-inference/index.qmd old mode 100644 new mode 100755 index bb3721c86..1d14e3a58 --- a/tutorials/09-variational-inference/index.qmd +++ b/tutorials/09-variational-inference/index.qmd @@ -1,872 +1,878 @@ ---- -title: Variational inference (VI) in Turing.jl -engine: julia ---- - -In this post we'll have a look at what's know as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods, and how to use it in Turing.jl as an alternative to other approaches such as MCMC. In particular, we will focus on one of the more standard VI methods called **Automatic Differentation Variational Inference (ADVI)**. - -Here we will focus on how to use VI in Turing and not much on the theory underlying VI. -If you are interested in understanding the mathematics you can checkout [our write-up](../../docs/for-developers/variational_inference) or any other resource online (there a lot of great ones). - -Using VI in Turing.jl is very straight forward. -If `model` denotes a definition of a `Turing.Model`, performing VI is as simple as - -```{julia} -#| eval: false -m = model(data...) # instantiate model on the data -q = vi(m, vi_alg) # perform VI on `m` using the VI method `vi_alg`, which returns a `VariationalPosterior` -``` - -Thus it's no more work than standard MCMC sampling in Turing. - -To get a bit more into what we can do with `vi`, we'll first have a look at a simple example and then we'll reproduce the [tutorial on Bayesian linear regression](../../tutorials/5-linearregression) using VI instead of MCMC. Finally we'll look at some of the different parameters of `vi` and how you for example can use your own custom variational family. - -We first import the packages to be used: - -```{julia} -using Random -using Turing -using Turing: Variational -using StatsPlots, Measures - -Random.seed!(42); -``` - -## Simple example: Normal-Gamma conjugate model - -The Normal-(Inverse)Gamma conjugate model is defined by the following generative process - -\begin{align} -s &\sim \mathrm{InverseGamma}(2, 3) \\ -m &\sim \mathcal{N}(0, s) \\ -x_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, s), \quad i = 1, \dots, n -\end{align} - -Recall that *conjugate* refers to the fact that we can obtain a closed-form expression for the posterior. Of course one wouldn't use something like variational inference for a conjugate model, but it's useful as a simple demonstration as we can compare the result to the true posterior. - -First we generate some synthetic data, define the `Turing.Model` and instantiate the model on the data: - -```{julia} -# generate data -x = randn(2000); -``` - -```{julia} -@model function model(x) - s ~ InverseGamma(2, 3) - m ~ Normal(0.0, sqrt(s)) - for i in 1:length(x) - x[i] ~ Normal(m, sqrt(s)) - end -end; -``` - -```{julia} -# Instantiate model -m = model(x); -``` - -Now we'll produce some samples from the posterior using a MCMC method, which in constrast to VI is guaranteed to converge to the *exact* posterior (as the number of samples go to infinity). - -We'll produce 10 000 samples with 200 steps used for adaptation and a target acceptance rate of 0.65 - -If you don't understand what "adaptation" or "target acceptance rate" refers to, all you really need to know is that `NUTS` is known to be one of the most accurate and efficient samplers (when applicable) while requiring little to no hand-tuning to work well. - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -samples_nuts = sample(m, NUTS(), 10_000); -``` - -Now let's try VI. The most important function you need to now about to do VI in Turing is `vi`: - -```{julia} -@doc(Variational.vi) -``` - -Additionally, you can pass - - - an initial variational posterior `q`, for which we assume there exists a implementation of `update(::typeof(q), θ::AbstractVector)` returning an updated posterior `q` with parameters `θ`. - - a function mapping $\theta \mapsto q_{\theta}$ (denoted above `getq`) together with initial parameters `θ`. This provides more flexibility in the types of variational families that we can use, and can sometimes be slightly more convenient for quick and rough work. - -By default, i.e. when calling `vi(m, advi)`, Turing use a *mean-field* approximation with a multivariate normal as the base-distribution. Mean-field refers to the fact that we assume all the latent variables to be *independent*. This the "standard" ADVI approach; see [Automatic Differentiation Variational Inference (2016)](https://arxiv.org/abs/1603.00788) for more. In Turing, one can obtain such a mean-field approximation by calling `Variational.meanfield(model)` for which there exists an internal implementation for `update`: - -```{julia} -@doc(Variational.meanfield) -``` - -Currently the only implementation of `VariationalInference` available is `ADVI`, which is very convenient and applicable as long as your `Model` is differentiable with respect to the *variational parameters*, that is, the parameters of your variational distribution, e.g. mean and variance in the mean-field approximation. - -```{julia} -@doc(Variational.ADVI) -``` - -To perform VI on the model `m` using 10 samples for gradient estimation and taking 1000 gradient steps is then as simple as: - -```{julia} -# ADVI -advi = ADVI(10, 1000) -q = vi(m, advi); -``` - -Unfortunately, for such a small problem Turing's new `NUTS` sampler is *so* efficient now that it's not that much more efficient to use ADVI. So, so very unfortunate... - -With that being said, this is not the case in general. For very complex models we'll later find that `ADVI` produces very reasonable results in a much shorter time than `NUTS`. - -And one significant advantage of using `vi` is that we can sample from the resulting `q` with ease. In fact, the result of the `vi` call is a `TransformedDistribution` from Bijectors.jl, and it implements the Distributions.jl interface for a `Distribution`: - -```{julia} -q isa MultivariateDistribution -``` - -This means that we can call `rand` to sample from the variational posterior `q` - -```{julia} -histogram(rand(q, 1_000)[1, :]) -``` - -and `logpdf` to compute the log-probability - -```{julia} -logpdf(q, rand(q)) -``` - -Let's check the first and second moments of the data to see how our approximation compares to the point-estimates form the data: - -```{julia} -var(x), mean(x) -``` - -```{julia} -(mean(rand(q, 1000); dims=2)...,) -``` - -```{julia} -#| echo: false -let - v, m = (mean(rand(q, 1000); dims=2)...,) - # On Turing version 0.14, this atol could be 0.01. - @assert isapprox(v, 1.022; atol=0.1) "Mean of s (VI posterior, 1000 samples): $v" - @assert isapprox(m, -0.027; atol=0.03) "Mean of m (VI posterior, 1000 samples): $m" -end -``` - -That's pretty close! But we're Bayesian so we're not interested in *just* matching the mean. -Let's instead look the actual density `q`. - -For that we need samples: - -```{julia} -samples = rand(q, 10000); -size(samples) -``` - -```{julia} -p1 = histogram( - samples[1, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="", ylabel="density" -) -density!(samples[1, :]; label="s (ADVI)", color=:blue, linewidth=2) -density!(samples_nuts, :s; label="s (NUTS)", color=:green, linewidth=2) -vline!([var(x)]; label="s (data)", color=:black) -vline!([mean(samples[1, :])]; color=:blue, label="") - -p2 = histogram( - samples[2, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="", ylabel="density" -) -density!(samples[2, :]; label="m (ADVI)", color=:blue, linewidth=2) -density!(samples_nuts, :m; label="m (NUTS)", color=:green, linewidth=2) -vline!([mean(x)]; color=:black, label="m (data)") -vline!([mean(samples[2, :])]; color=:blue, label="") - -plot(p1, p2; layout=(2, 1), size=(900, 500), legend=true) -``` - -For this particular `Model`, we can in fact obtain the posterior of the latent variables in closed form. This allows us to compare both `NUTS` and `ADVI` to the true posterior $p(s, m \mid x_1, \ldots, x_n)$. - -*The code below is just work to get the marginals $p(s \mid x_1, \ldots, x_n)$ and $p(m \mid x_1, \ldots, x_n)$. Feel free to skip it.* - -```{julia} -# closed form computation of the Normal-inverse-gamma posterior -# based on "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy -function posterior(μ₀::Real, κ₀::Real, α₀::Real, β₀::Real, x::AbstractVector{<:Real}) - # Compute summary statistics - n = length(x) - x̄ = mean(x) - sum_of_squares = sum(xi -> (xi - x̄)^2, x) - - # Compute parameters of the posterior - κₙ = κ₀ + n - μₙ = (κ₀ * μ₀ + n * x̄) / κₙ - αₙ = α₀ + n / 2 - βₙ = β₀ + (sum_of_squares + n * κ₀ / κₙ * (x̄ - μ₀)^2) / 2 - - return μₙ, κₙ, αₙ, βₙ -end -μₙ, κₙ, αₙ, βₙ = posterior(0.0, 1.0, 2.0, 3.0, x) - -# marginal distribution of σ² -# cf. Eq. (90) in "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy -p_σ² = InverseGamma(αₙ, βₙ) -p_σ²_pdf = z -> pdf(p_σ², z) - -# marginal of μ -# Eq. (91) in "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy -p_μ = μₙ + sqrt(βₙ / (αₙ * κₙ)) * TDist(2 * αₙ) -p_μ_pdf = z -> pdf(p_μ, z) - -# posterior plots -p1 = plot() -histogram!(samples[1, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="") -density!(samples[1, :]; label="s (ADVI)", color=:blue) -density!(samples_nuts, :s; label="s (NUTS)", color=:green) -vline!([mean(samples[1, :])]; linewidth=1.5, color=:blue, label="") -plot!(range(0.75, 1.35; length=1_001), p_σ²_pdf; label="s (posterior)", color=:red) -vline!([var(x)]; label="s (data)", linewidth=1.5, color=:black, alpha=0.7) -xlims!(0.75, 1.35) - -p2 = plot() -histogram!(samples[2, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="") -density!(samples[2, :]; label="m (ADVI)", color=:blue) -density!(samples_nuts, :m; label="m (NUTS)", color=:green) -vline!([mean(samples[2, :])]; linewidth=1.5, color=:blue, label="") -plot!(range(-0.25, 0.25; length=1_001), p_μ_pdf; label="m (posterior)", color=:red) -vline!([mean(x)]; label="m (data)", linewidth=1.5, color=:black, alpha=0.7) -xlims!(-0.25, 0.25) - -plot(p1, p2; layout=(2, 1), size=(900, 500)) -``` - -## Bayesian linear regression example using ADVI - -This is simply a duplication of the tutorial [5. Linear regression](../regression/02_linear-regression) but now with the addition of an approximate posterior obtained using `ADVI`. - -As we'll see, there is really no additional work required to apply variational inference to a more complex `Model`. - -This section is basically copy-pasting the code from the [linear regression tutorial](../regression/02_linear-regression). - -```{julia} -Random.seed!(1); -``` - -```{julia} -using FillArrays -using RDatasets - -using LinearAlgebra -``` - -```{julia} -# Import the "Default" dataset. -data = RDatasets.dataset("datasets", "mtcars"); - -# Show the first six rows of the dataset. -first(data, 6) -``` - -```{julia} -# Function to split samples. -function split_data(df, at=0.70) - r = size(df, 1) - index = Int(round(r * at)) - train = df[1:index, :] - test = df[(index + 1):end, :] - return train, test -end - -# A handy helper function to rescale our dataset. -function standardize(x) - return (x .- mean(x; dims=1)) ./ std(x; dims=1) -end - -function standardize(x, orig) - return (x .- mean(orig; dims=1)) ./ std(orig; dims=1) -end - -# Another helper function to unstandardize our datasets. -function unstandardize(x, orig) - return x .* std(orig; dims=1) .+ mean(orig; dims=1) -end - -function unstandardize(x, mean_train, std_train) - return x .* std_train .+ mean_train -end -``` - -```{julia} -# Remove the model column. -select!(data, Not(:Model)) - -# Split our dataset 70%/30% into training/test sets. -train, test = split_data(data, 0.7) -train_unstandardized = copy(train) - -# Standardize both datasets. -std_train = standardize(Matrix(train)) -std_test = standardize(Matrix(test), Matrix(train)) - -# Save dataframe versions of our dataset. -train_cut = DataFrame(std_train, names(data)) -test_cut = DataFrame(std_test, names(data)) - -# Create our labels. These are the values we are trying to predict. -train_label = train_cut[:, :MPG] -test_label = test_cut[:, :MPG] - -# Get the list of columns to keep. -remove_names = filter(x -> !in(x, ["MPG"]), names(data)) - -# Filter the test and train sets. -train = Matrix(train_cut[:, remove_names]); -test = Matrix(test_cut[:, remove_names]); -``` - -```{julia} -# Bayesian linear regression. -@model function linear_regression(x, y, n_obs, n_vars, ::Type{T}=Vector{Float64}) where {T} - # Set variance prior. - σ² ~ truncated(Normal(0, 100), 0, Inf) - - # Set intercept prior. - intercept ~ Normal(0, 3) - - # Set the priors on our coefficients. - coefficients ~ MvNormal(Zeros(n_vars), 10.0 * I) - - # Calculate all the mu terms. - mu = intercept .+ x * coefficients - return y ~ MvNormal(mu, σ² * I) -end; -``` - -```{julia} -n_obs, n_vars = size(train) -m = linear_regression(train, train_label, n_obs, n_vars); -``` - -## Performing VI - -First we define the initial variational distribution, or, equivalently, the family of distributions to consider. We're going to use the same mean-field approximation as Turing will use by default when we call `vi(m, advi)`, which we obtain by calling `Variational.meanfield`. This returns a `TransformedDistribution` with a `TuringDiagMvNormal` as the underlying distribution and the transformation mapping from the reals to the domain of the latent variables. - -```{julia} -q0 = Variational.meanfield(m) -typeof(q0) -``` - -```{julia} -advi = ADVI(10, 10_000) -``` - -Turing also provides a couple of different optimizers: - - - `TruncatedADAGrad` (default) - - `DecayedADAGrad` - as these are well-suited for problems with high-variance stochastic objectives, which is usually what the ELBO ends up being at different times in our optimization process. - -With that being said, thanks to Requires.jl, if we add a `using Flux` prior to `using Turing` we can also make use of all the optimizers in `Flux`, e.g. `ADAM`, without any additional changes to your code! For example: - -```{julia} -#| eval: false -using Flux, Turing -using Turing.Variational - -vi(m, advi; optimizer=Flux.ADAM()) -``` - -just works. - -For this problem we'll use the `DecayedADAGrad` from Turing: - -```{julia} -opt = Variational.DecayedADAGrad(1e-2, 1.1, 0.9) -``` - -```{julia} -q = vi(m, advi, q0; optimizer=opt) -typeof(q) -``` - -*Note: as mentioned before, we internally define a `update(q::TransformedDistribution{<:TuringDiagMvNormal}, θ::AbstractVector)` method which takes in the current variational approximation `q` together with new parameters `z` and returns the new variational approximation. This is required so that we can actually update the `Distribution` object after each optimization step.* - -*Alternatively, we can instead provide the mapping $\theta \mapsto q_{\theta}$ directly together with initial parameters using the signature `vi(m, advi, getq, θ_init)` as mentioned earlier. We'll see an explicit example of this later on!* - -To compute statistics for our approximation we need samples: - -```{julia} -z = rand(q, 10_000); -``` - -Now we can for example look at the average - -```{julia} -avg = vec(mean(z; dims=2)) -``` - -The vector has the same ordering as the model, e.g. in this case `σ²` has index `1`, `intercept` has index `2` and `coefficients` has indices `3:12`. If you forget or you might want to do something programmatically with the result, you can obtain the `sym → indices` mapping as follows: - -```{julia} -_, sym2range = bijector(m, Val(true)); -sym2range -``` - -For example, we can check the sample distribution and mean value of `σ²`: - -```{julia} -histogram(z[1, :]) -avg[union(sym2range[:σ²]...)] -``` - -```{julia} -avg[union(sym2range[:intercept]...)] -``` - -```{julia} -avg[union(sym2range[:coefficients]...)] -``` - -*Note: as you can see, this is slightly awkward to work with at the moment. We'll soon add a better way of dealing with this.* - -With a bit of work (this will be much easier in the future), we can also visualize the approximate marginals of the different variables, similar to `plot(chain)`: - -```{julia} -function plot_variational_marginals(z, sym2range) - ps = [] - - for (i, sym) in enumerate(keys(sym2range)) - indices = union(sym2range[sym]...) # <= array of ranges - if sum(length.(indices)) > 1 - offset = 1 - for r in indices - p = density( - z[r, :]; - title="$(sym)[$offset]", - titlefontsize=10, - label="", - ylabel="Density", - margin=1.5mm, - ) - push!(ps, p) - offset += 1 - end - else - p = density( - z[first(indices), :]; - title="$(sym)", - titlefontsize=10, - label="", - ylabel="Density", - margin=1.5mm, - ) - push!(ps, p) - end - end - - return plot(ps...; layout=(length(ps), 1), size=(500, 2000), margin=4.0mm) -end -``` - -```{julia} -plot_variational_marginals(z, sym2range) -``` - -And let's compare this to using the `NUTS` sampler: - -```{julia} -chain = sample(m, NUTS(), 10_000); -``` - -```{julia} -plot(chain; margin=12.00mm) -``` - -```{julia} -vi_mean = vec(mean(z; dims=2))[[ - union(sym2range[:coefficients]...)..., - union(sym2range[:intercept]...)..., - union(sym2range[:σ²]...)..., -]] -``` - -```{julia} -mcmc_mean = mean(chain, names(chain, :parameters))[:, 2] -``` - -```{julia} -plot(mcmc_mean; xticks=1:1:length(mcmc_mean), linestyle=:dot, label="NUTS") -plot!(vi_mean; linestyle=:dot, label="VI") -``` - -One thing we can look at is simply the squared error between the means: - -```{julia} -sum(abs2, mcmc_mean .- vi_mean) -``` - -That looks pretty good! But let's see how the predictive distributions looks for the two. - -## Prediction - -Similarily to the linear regression tutorial, we're going to compare to multivariate ordinary linear regression using the `GLM` package: - -```{julia} -# Import the GLM package. -using GLM - -# Perform multivariate OLS. -ols = lm( - @formula(MPG ~ Cyl + Disp + HP + DRat + WT + QSec + VS + AM + Gear + Carb), train_cut -) - -# Store our predictions in the original dataframe. -train_cut.OLSPrediction = unstandardize(GLM.predict(ols), train_unstandardized.MPG) -test_cut.OLSPrediction = unstandardize(GLM.predict(ols, test_cut), train_unstandardized.MPG); -``` - -```{julia} -# Make a prediction given an input vector, using mean parameter values from a chain. -function prediction_chain(chain, x) - p = get_params(chain) - α = mean(p.intercept) - β = collect(mean.(p.coefficients)) - return α .+ x * β -end -``` - -```{julia} -# Make a prediction using samples from the variational posterior given an input vector. -function prediction(samples::AbstractVector, sym2ranges, x) - α = mean(samples[union(sym2ranges[:intercept]...)]) - β = vec(mean(samples[union(sym2ranges[:coefficients]...)]; dims=2)) - return α .+ x * β -end - -function prediction(samples::AbstractMatrix, sym2ranges, x) - α = mean(samples[union(sym2ranges[:intercept]...), :]) - β = vec(mean(samples[union(sym2ranges[:coefficients]...), :]; dims=2)) - return α .+ x * β -end -``` - -```{julia} -# Unstandardize the dependent variable. -train_cut.MPG = unstandardize(train_cut.MPG, train_unstandardized.MPG) -test_cut.MPG = unstandardize(test_cut.MPG, train_unstandardized.MPG); -``` - -```{julia} -# Show the first side rows of the modified dataframe. -first(test_cut, 6) -``` - -```{julia} -z = rand(q, 10_000); -``` - -```{julia} -# Calculate the predictions for the training and testing sets using the samples `z` from variational posterior -train_cut.VIPredictions = unstandardize( - prediction(z, sym2range, train), train_unstandardized.MPG -) -test_cut.VIPredictions = unstandardize( - prediction(z, sym2range, test), train_unstandardized.MPG -) - -train_cut.BayesPredictions = unstandardize( - prediction_chain(chain, train), train_unstandardized.MPG -) -test_cut.BayesPredictions = unstandardize( - prediction_chain(chain, test), train_unstandardized.MPG -); -``` - -```{julia} -vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) -bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) -ols_loss1 = mean((train_cut.OLSPrediction - train_cut.MPG) .^ 2) - -vi_loss2 = mean((test_cut.VIPredictions - test_cut.MPG) .^ 2) -bayes_loss2 = mean((test_cut.BayesPredictions - test_cut.MPG) .^ 2) -ols_loss2 = mean((test_cut.OLSPrediction - test_cut.MPG) .^ 2) - -println("Training set: - VI loss: $vi_loss1 - Bayes loss: $bayes_loss1 - OLS loss: $ols_loss1 -Test set: - VI loss: $vi_loss2 - Bayes loss: $bayes_loss2 - OLS loss: $ols_loss2") -``` - - -Interestingly the squared difference between true- and mean-prediction on the test-set is actually *better* for the mean-field variational posterior than for the "true" posterior obtained by MCMC sampling using `NUTS`. But, as Bayesians, we know that the mean doesn't tell the entire story. One quick check is to look at the mean predictions ± standard deviation of the two different approaches: - -```{julia} -z = rand(q, 1000); -preds = mapreduce(hcat, eachcol(z)) do zi - return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) -end - -scatter( - 1:size(test, 1), - mean(preds; dims=2); - yerr=std(preds; dims=2), - label="prediction (mean ± std)", - size=(900, 500), - markersize=8, -) -scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") -xaxis!(1:size(test, 1)) -ylims!(10, 40) -title!("Mean-field ADVI (Normal)") -``` - -```{julia} -preds = mapreduce(hcat, 1:5:size(chain, 1)) do i - return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) -end - -scatter( - 1:size(test, 1), - mean(preds; dims=2); - yerr=std(preds; dims=2), - label="prediction (mean ± std)", - size=(900, 500), - markersize=8, -) -scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") -xaxis!(1:size(test, 1)) -ylims!(10, 40) -title!("MCMC (NUTS)") -``` - -Indeed we see that the MCMC approach generally provides better uncertainty estimates than the mean-field ADVI approach! Good. So all the work we've done to make MCMC fast isn't for nothing. - -## Alternative: provide parameter-to-distribution instead of $q$ with `update` implemented - -As mentioned earlier, it's also possible to just provide the mapping $\theta \mapsto q_{\theta}$ rather than the variational family / initial variational posterior `q`, i.e. use the interface `vi(m, advi, getq, θ_init)` where `getq` is the mapping $\theta \mapsto q_{\theta}$ - -In this section we're going to construct a mean-field approximation to the model by hand using a composition of`Shift` and `Scale` from Bijectors.jl togheter with a standard multivariate Gaussian as the base distribution. - -```{julia} -using Bijectors -``` - -```{julia} -using Bijectors: Scale, Shift -``` - -```{julia} -d = length(q) -base_dist = Turing.DistributionsAD.TuringDiagMvNormal(zeros(d), ones(d)) -``` - -`bijector(model::Turing.Model)` is defined by Turing, and will return a `bijector` which takes you from the space of the latent variables to the real space. In this particular case, this is a mapping `((0, ∞) × ℝ × ℝ¹⁰) → ℝ¹²`. We're interested in using a normal distribution as a base-distribution and transform samples to the latent space, thus we need the inverse mapping from the reals to the latent space: - -```{julia} -to_constrained = inverse(bijector(m)); -``` - -```{julia} -function getq(θ) - d = length(θ) ÷ 2 - A = @inbounds θ[1:d] - b = @inbounds θ[(d + 1):(2 * d)] - - b = to_constrained ∘ Shift(b) ∘ Scale(exp.(A)) - - return transformed(base_dist, b) -end -``` - -```{julia} -q_mf_normal = vi(m, advi, getq, randn(2 * d)); -``` - -```{julia} -p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) # MvDiagNormal + Affine transformation + to_constrained -p2 = plot_variational_marginals(rand(q, 10_000), sym2range) # Turing.meanfield(m) - -plot(p1, p2; layout=(1, 2), size=(800, 2000)) -``` - -As expected, the fits look pretty much identical. - -But using this interface it becomes trivial to go beyond the mean-field assumption we made for the variational posterior, as we'll see in the next section. - -### Relaxing the mean-field assumption - -Here we'll instead consider the variational family to be a full non-diagonal multivariate Gaussian. As in the previous section we'll implement this by transforming a standard multivariate Gaussian using `Scale` and `Shift`, but now `Scale` will instead be using a lower-triangular matrix (representing the Cholesky of the covariance matrix of a multivariate normal) in contrast to the diagonal matrix we used in for the mean-field approximate posterior. - -```{julia} -# Using `ComponentArrays.jl` together with `UnPack.jl` makes our lives much easier. -using ComponentArrays, UnPack -``` - -```{julia} -proto_arr = ComponentArray(; L=zeros(d, d), b=zeros(d)) -proto_axes = getaxes(proto_arr) -num_params = length(proto_arr) - -function getq(θ) - L, b = begin - @unpack L, b = ComponentArray(θ, proto_axes) - LowerTriangular(L), b - end - # For this to represent a covariance matrix we need to ensure that the diagonal is positive. - # We can enforce this by zeroing out the diagonal and then adding back the diagonal exponentiated. - D = Diagonal(diag(L)) - A = L - D + exp(D) # exp for Diagonal is the same as exponentiating only the diagonal entries - - b = to_constrained ∘ Shift(b) ∘ Scale(A) - - return transformed(base_dist, b) -end -``` - -```{julia} -advi = ADVI(10, 20_000) -``` - -```{julia} -q_full_normal = vi( - m, advi, getq, randn(num_params); optimizer=Variational.DecayedADAGrad(1e-2) -); -``` - -Let's have a look at the learned covariance matrix: - -```{julia} -A = q_full_normal.transform.inner.a -``` - -```{julia} -heatmap(cov(A * A')) -``` - -```{julia} -zs = rand(q_full_normal, 10_000); -``` - -```{julia} -p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) -p2 = plot_variational_marginals(rand(q_full_normal, 10_000), sym2range) - -plot(p1, p2; layout=(1, 2), size=(800, 2000)) -``` - -So it seems like the "full" ADVI approach, i.e. no mean-field assumption, obtain the same modes as the mean-field approach but with greater uncertainty for some of the `coefficients`. This - -```{julia} -# Unfortunately, it seems like this has quite a high variance which is likely to be due to numerical instability, -# so we consider a larger number of samples. If we get a couple of outliers due to numerical issues, -# these kind affect the mean prediction greatly. -z = rand(q_full_normal, 10_000); -``` - -```{julia} -train_cut.VIFullPredictions = unstandardize( - prediction(z, sym2range, train), train_unstandardized.MPG -) -test_cut.VIFullPredictions = unstandardize( - prediction(z, sym2range, test), train_unstandardized.MPG -); -``` - -```{julia} -vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) -vifull_loss1 = mean((train_cut.VIFullPredictions - train_cut.MPG) .^ 2) -bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) -ols_loss1 = mean((train_cut.OLSPrediction - train_cut.MPG) .^ 2) - -vi_loss2 = mean((test_cut.VIPredictions - test_cut.MPG) .^ 2) -vifull_loss2 = mean((test_cut.VIFullPredictions - test_cut.MPG) .^ 2) -bayes_loss2 = mean((test_cut.BayesPredictions - test_cut.MPG) .^ 2) -ols_loss2 = mean((test_cut.OLSPrediction - test_cut.MPG) .^ 2) - -println("Training set: - VI loss: $vi_loss1 - Bayes loss: $bayes_loss1 - OLS loss: $ols_loss1 -Test set: - VI loss: $vi_loss2 - Bayes loss: $bayes_loss2 - OLS loss: $ols_loss2") -``` - -```{julia} -#| eval: false -#| echo: false -# Verify the loss on the test set. -@assert vi_loss2 < 0.01 "VI loss on the test set: $(vi_loss2)" -@assert bayes_loss2 < 0.000001 "Bayes loss on the test set: $(bayes_loss2)" -``` - -```{julia} -z = rand(q_mf_normal, 1000); -preds = mapreduce(hcat, eachcol(z)) do zi - return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) -end - -p1 = scatter( - 1:size(test, 1), - mean(preds; dims=2); - yerr=std(preds; dims=2), - label="prediction (mean ± std)", - size=(900, 500), - markersize=8, -) -scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") -xaxis!(1:size(test, 1)) -ylims!(10, 40) -title!("Mean-field ADVI (Normal)") -``` - -```{julia} -z = rand(q_full_normal, 1000); -preds = mapreduce(hcat, eachcol(z)) do zi - return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) -end - -p2 = scatter( - 1:size(test, 1), - mean(preds; dims=2); - yerr=std(preds; dims=2), - label="prediction (mean ± std)", - size=(900, 500), - markersize=8, -) -scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") -xaxis!(1:size(test, 1)) -ylims!(10, 40) -title!("Full ADVI (Normal)") -``` - -```{julia} -preds = mapreduce(hcat, 1:5:size(chain, 1)) do i - return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) -end - -p3 = scatter( - 1:size(test, 1), - mean(preds; dims=2); - yerr=std(preds; dims=2), - label="prediction (mean ± std)", - size=(900, 500), - markersize=8, -) -scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") -xaxis!(1:size(test, 1)) -ylims!(10, 40) -title!("MCMC (NUTS)") -``` - -```{julia} -plot(p1, p2, p3; layout=(1, 3), size=(900, 250), label="") -``` - -Here we actually see that indeed both the full ADVI and the MCMC approaches does a much better job of quantifying the uncertainty of predictions for never-before-seen samples, with full ADVI seemingly *underestimating* the variance slightly compared to MCMC. - +--- +title: Variational inference (VI) in Turing.jl +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In this post we'll have a look at what's know as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods, and how to use it in Turing.jl as an alternative to other approaches such as MCMC. In particular, we will focus on one of the more standard VI methods called **Automatic Differentation Variational Inference (ADVI)**. + +Here we will focus on how to use VI in Turing and not much on the theory underlying VI. +If you are interested in understanding the mathematics you can checkout [our write-up](../../docs/for-developers/variational_inference) or any other resource online (there a lot of great ones). + +Using VI in Turing.jl is very straight forward. +If `model` denotes a definition of a `Turing.Model`, performing VI is as simple as + +```{julia} +#| eval: false +m = model(data...) # instantiate model on the data +q = vi(m, vi_alg) # perform VI on `m` using the VI method `vi_alg`, which returns a `VariationalPosterior` +``` + +Thus it's no more work than standard MCMC sampling in Turing. + +To get a bit more into what we can do with `vi`, we'll first have a look at a simple example and then we'll reproduce the [tutorial on Bayesian linear regression](../../tutorials/5-linearregression) using VI instead of MCMC. Finally we'll look at some of the different parameters of `vi` and how you for example can use your own custom variational family. + +We first import the packages to be used: + +```{julia} +using Random +using Turing +using Turing: Variational +using StatsPlots, Measures + +Random.seed!(42); +``` + +## Simple example: Normal-Gamma conjugate model + +The Normal-(Inverse)Gamma conjugate model is defined by the following generative process + +\begin{align} +s &\sim \mathrm{InverseGamma}(2, 3) \\ +m &\sim \mathcal{N}(0, s) \\ +x_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, s), \quad i = 1, \dots, n +\end{align} + +Recall that *conjugate* refers to the fact that we can obtain a closed-form expression for the posterior. Of course one wouldn't use something like variational inference for a conjugate model, but it's useful as a simple demonstration as we can compare the result to the true posterior. + +First we generate some synthetic data, define the `Turing.Model` and instantiate the model on the data: + +```{julia} +# generate data +x = randn(2000); +``` + +```{julia} +@model function model(x) + s ~ InverseGamma(2, 3) + m ~ Normal(0.0, sqrt(s)) + for i in 1:length(x) + x[i] ~ Normal(m, sqrt(s)) + end +end; +``` + +```{julia} +# Instantiate model +m = model(x); +``` + +Now we'll produce some samples from the posterior using a MCMC method, which in constrast to VI is guaranteed to converge to the *exact* posterior (as the number of samples go to infinity). + +We'll produce 10 000 samples with 200 steps used for adaptation and a target acceptance rate of 0.65 + +If you don't understand what "adaptation" or "target acceptance rate" refers to, all you really need to know is that `NUTS` is known to be one of the most accurate and efficient samplers (when applicable) while requiring little to no hand-tuning to work well. + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +samples_nuts = sample(m, NUTS(), 10_000); +``` + +Now let's try VI. The most important function you need to now about to do VI in Turing is `vi`: + +```{julia} +@doc(Variational.vi) +``` + +Additionally, you can pass + + - an initial variational posterior `q`, for which we assume there exists a implementation of `update(::typeof(q), θ::AbstractVector)` returning an updated posterior `q` with parameters `θ`. + - a function mapping $\theta \mapsto q_{\theta}$ (denoted above `getq`) together with initial parameters `θ`. This provides more flexibility in the types of variational families that we can use, and can sometimes be slightly more convenient for quick and rough work. + +By default, i.e. when calling `vi(m, advi)`, Turing use a *mean-field* approximation with a multivariate normal as the base-distribution. Mean-field refers to the fact that we assume all the latent variables to be *independent*. This the "standard" ADVI approach; see [Automatic Differentiation Variational Inference (2016)](https://arxiv.org/abs/1603.00788) for more. In Turing, one can obtain such a mean-field approximation by calling `Variational.meanfield(model)` for which there exists an internal implementation for `update`: + +```{julia} +@doc(Variational.meanfield) +``` + +Currently the only implementation of `VariationalInference` available is `ADVI`, which is very convenient and applicable as long as your `Model` is differentiable with respect to the *variational parameters*, that is, the parameters of your variational distribution, e.g. mean and variance in the mean-field approximation. + +```{julia} +@doc(Variational.ADVI) +``` + +To perform VI on the model `m` using 10 samples for gradient estimation and taking 1000 gradient steps is then as simple as: + +```{julia} +# ADVI +advi = ADVI(10, 1000) +q = vi(m, advi); +``` + +Unfortunately, for such a small problem Turing's new `NUTS` sampler is *so* efficient now that it's not that much more efficient to use ADVI. So, so very unfortunate... + +With that being said, this is not the case in general. For very complex models we'll later find that `ADVI` produces very reasonable results in a much shorter time than `NUTS`. + +And one significant advantage of using `vi` is that we can sample from the resulting `q` with ease. In fact, the result of the `vi` call is a `TransformedDistribution` from Bijectors.jl, and it implements the Distributions.jl interface for a `Distribution`: + +```{julia} +q isa MultivariateDistribution +``` + +This means that we can call `rand` to sample from the variational posterior `q` + +```{julia} +histogram(rand(q, 1_000)[1, :]) +``` + +and `logpdf` to compute the log-probability + +```{julia} +logpdf(q, rand(q)) +``` + +Let's check the first and second moments of the data to see how our approximation compares to the point-estimates form the data: + +```{julia} +var(x), mean(x) +``` + +```{julia} +(mean(rand(q, 1000); dims=2)...,) +``` + +```{julia} +#| echo: false +let + v, m = (mean(rand(q, 2000); dims=2)...,) + # On Turing version 0.14, this atol could be 0.01. + @assert isapprox(v, 1.022; atol=0.1) "Mean of s (VI posterior, 1000 samples): $v" + @assert isapprox(m, -0.027; atol=0.03) "Mean of m (VI posterior, 1000 samples): $m" +end +``` + +That's pretty close! But we're Bayesian so we're not interested in *just* matching the mean. +Let's instead look the actual density `q`. + +For that we need samples: + +```{julia} +samples = rand(q, 10000); +size(samples) +``` + +```{julia} +p1 = histogram( + samples[1, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="", ylabel="density" +) +density!(samples[1, :]; label="s (ADVI)", color=:blue, linewidth=2) +density!(samples_nuts, :s; label="s (NUTS)", color=:green, linewidth=2) +vline!([var(x)]; label="s (data)", color=:black) +vline!([mean(samples[1, :])]; color=:blue, label="") + +p2 = histogram( + samples[2, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="", ylabel="density" +) +density!(samples[2, :]; label="m (ADVI)", color=:blue, linewidth=2) +density!(samples_nuts, :m; label="m (NUTS)", color=:green, linewidth=2) +vline!([mean(x)]; color=:black, label="m (data)") +vline!([mean(samples[2, :])]; color=:blue, label="") + +plot(p1, p2; layout=(2, 1), size=(900, 500), legend=true) +``` + +For this particular `Model`, we can in fact obtain the posterior of the latent variables in closed form. This allows us to compare both `NUTS` and `ADVI` to the true posterior $p(s, m \mid x_1, \ldots, x_n)$. + +*The code below is just work to get the marginals $p(s \mid x_1, \ldots, x_n)$ and $p(m \mid x_1, \ldots, x_n)$. Feel free to skip it.* + +```{julia} +# closed form computation of the Normal-inverse-gamma posterior +# based on "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy +function posterior(μ₀::Real, κ₀::Real, α₀::Real, β₀::Real, x::AbstractVector{<:Real}) + # Compute summary statistics + n = length(x) + x̄ = mean(x) + sum_of_squares = sum(xi -> (xi - x̄)^2, x) + + # Compute parameters of the posterior + κₙ = κ₀ + n + μₙ = (κ₀ * μ₀ + n * x̄) / κₙ + αₙ = α₀ + n / 2 + βₙ = β₀ + (sum_of_squares + n * κ₀ / κₙ * (x̄ - μ₀)^2) / 2 + + return μₙ, κₙ, αₙ, βₙ +end +μₙ, κₙ, αₙ, βₙ = posterior(0.0, 1.0, 2.0, 3.0, x) + +# marginal distribution of σ² +# cf. Eq. (90) in "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy +p_σ² = InverseGamma(αₙ, βₙ) +p_σ²_pdf = z -> pdf(p_σ², z) + +# marginal of μ +# Eq. (91) in "Conjugate Bayesian analysis of the Gaussian distribution" by Murphy +p_μ = μₙ + sqrt(βₙ / (αₙ * κₙ)) * TDist(2 * αₙ) +p_μ_pdf = z -> pdf(p_μ, z) + +# posterior plots +p1 = plot() +histogram!(samples[1, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="") +density!(samples[1, :]; label="s (ADVI)", color=:blue) +density!(samples_nuts, :s; label="s (NUTS)", color=:green) +vline!([mean(samples[1, :])]; linewidth=1.5, color=:blue, label="") +plot!(range(0.75, 1.35; length=1_001), p_σ²_pdf; label="s (posterior)", color=:red) +vline!([var(x)]; label="s (data)", linewidth=1.5, color=:black, alpha=0.7) +xlims!(0.75, 1.35) + +p2 = plot() +histogram!(samples[2, :]; bins=100, normed=true, alpha=0.2, color=:blue, label="") +density!(samples[2, :]; label="m (ADVI)", color=:blue) +density!(samples_nuts, :m; label="m (NUTS)", color=:green) +vline!([mean(samples[2, :])]; linewidth=1.5, color=:blue, label="") +plot!(range(-0.25, 0.25; length=1_001), p_μ_pdf; label="m (posterior)", color=:red) +vline!([mean(x)]; label="m (data)", linewidth=1.5, color=:black, alpha=0.7) +xlims!(-0.25, 0.25) + +plot(p1, p2; layout=(2, 1), size=(900, 500)) +``` + +## Bayesian linear regression example using ADVI + +This is simply a duplication of the tutorial [5. Linear regression](../regression/02_linear-regression) but now with the addition of an approximate posterior obtained using `ADVI`. + +As we'll see, there is really no additional work required to apply variational inference to a more complex `Model`. + +This section is basically copy-pasting the code from the [linear regression tutorial](../regression/02_linear-regression). + +```{julia} +Random.seed!(1); +``` + +```{julia} +using FillArrays +using RDatasets + +using LinearAlgebra +``` + +```{julia} +# Import the "Default" dataset. +data = RDatasets.dataset("datasets", "mtcars"); + +# Show the first six rows of the dataset. +first(data, 6) +``` + +```{julia} +# Function to split samples. +function split_data(df, at=0.70) + r = size(df, 1) + index = Int(round(r * at)) + train = df[1:index, :] + test = df[(index + 1):end, :] + return train, test +end + +# A handy helper function to rescale our dataset. +function standardize(x) + return (x .- mean(x; dims=1)) ./ std(x; dims=1) +end + +function standardize(x, orig) + return (x .- mean(orig; dims=1)) ./ std(orig; dims=1) +end + +# Another helper function to unstandardize our datasets. +function unstandardize(x, orig) + return x .* std(orig; dims=1) .+ mean(orig; dims=1) +end + +function unstandardize(x, mean_train, std_train) + return x .* std_train .+ mean_train +end +``` + +```{julia} +# Remove the model column. +select!(data, Not(:Model)) + +# Split our dataset 70%/30% into training/test sets. +train, test = split_data(data, 0.7) +train_unstandardized = copy(train) + +# Standardize both datasets. +std_train = standardize(Matrix(train)) +std_test = standardize(Matrix(test), Matrix(train)) + +# Save dataframe versions of our dataset. +train_cut = DataFrame(std_train, names(data)) +test_cut = DataFrame(std_test, names(data)) + +# Create our labels. These are the values we are trying to predict. +train_label = train_cut[:, :MPG] +test_label = test_cut[:, :MPG] + +# Get the list of columns to keep. +remove_names = filter(x -> !in(x, ["MPG"]), names(data)) + +# Filter the test and train sets. +train = Matrix(train_cut[:, remove_names]); +test = Matrix(test_cut[:, remove_names]); +``` + +```{julia} +# Bayesian linear regression. +@model function linear_regression(x, y, n_obs, n_vars, ::Type{T}=Vector{Float64}) where {T} + # Set variance prior. + σ² ~ truncated(Normal(0, 100), 0, Inf) + + # Set intercept prior. + intercept ~ Normal(0, 3) + + # Set the priors on our coefficients. + coefficients ~ MvNormal(Zeros(n_vars), 10.0 * I) + + # Calculate all the mu terms. + mu = intercept .+ x * coefficients + return y ~ MvNormal(mu, σ² * I) +end; +``` + +```{julia} +n_obs, n_vars = size(train) +m = linear_regression(train, train_label, n_obs, n_vars); +``` + +## Performing VI + +First we define the initial variational distribution, or, equivalently, the family of distributions to consider. We're going to use the same mean-field approximation as Turing will use by default when we call `vi(m, advi)`, which we obtain by calling `Variational.meanfield`. This returns a `TransformedDistribution` with a `TuringDiagMvNormal` as the underlying distribution and the transformation mapping from the reals to the domain of the latent variables. + +```{julia} +q0 = Variational.meanfield(m) +typeof(q0) +``` + +```{julia} +advi = ADVI(10, 10_000) +``` + +Turing also provides a couple of different optimizers: + + - `TruncatedADAGrad` (default) + - `DecayedADAGrad` + as these are well-suited for problems with high-variance stochastic objectives, which is usually what the ELBO ends up being at different times in our optimization process. + +With that being said, thanks to Requires.jl, if we add a `using Flux` prior to `using Turing` we can also make use of all the optimizers in `Flux`, e.g. `ADAM`, without any additional changes to your code! For example: + +```{julia} +#| eval: false +using Flux, Turing +using Turing.Variational + +vi(m, advi; optimizer=Flux.ADAM()) +``` + +just works. + +For this problem we'll use the `DecayedADAGrad` from Turing: + +```{julia} +opt = Variational.DecayedADAGrad(1e-2, 1.1, 0.9) +``` + +```{julia} +q = vi(m, advi, q0; optimizer=opt) +typeof(q) +``` + +*Note: as mentioned before, we internally define a `update(q::TransformedDistribution{<:TuringDiagMvNormal}, θ::AbstractVector)` method which takes in the current variational approximation `q` together with new parameters `z` and returns the new variational approximation. This is required so that we can actually update the `Distribution` object after each optimization step.* + +*Alternatively, we can instead provide the mapping $\theta \mapsto q_{\theta}$ directly together with initial parameters using the signature `vi(m, advi, getq, θ_init)` as mentioned earlier. We'll see an explicit example of this later on!* + +To compute statistics for our approximation we need samples: + +```{julia} +z = rand(q, 10_000); +``` + +Now we can for example look at the average + +```{julia} +avg = vec(mean(z; dims=2)) +``` + +The vector has the same ordering as the model, e.g. in this case `σ²` has index `1`, `intercept` has index `2` and `coefficients` has indices `3:12`. If you forget or you might want to do something programmatically with the result, you can obtain the `sym → indices` mapping as follows: + +```{julia} +_, sym2range = bijector(m, Val(true)); +sym2range +``` + +For example, we can check the sample distribution and mean value of `σ²`: + +```{julia} +histogram(z[1, :]) +avg[union(sym2range[:σ²]...)] +``` + +```{julia} +avg[union(sym2range[:intercept]...)] +``` + +```{julia} +avg[union(sym2range[:coefficients]...)] +``` + +*Note: as you can see, this is slightly awkward to work with at the moment. We'll soon add a better way of dealing with this.* + +With a bit of work (this will be much easier in the future), we can also visualize the approximate marginals of the different variables, similar to `plot(chain)`: + +```{julia} +function plot_variational_marginals(z, sym2range) + ps = [] + + for (i, sym) in enumerate(keys(sym2range)) + indices = union(sym2range[sym]...) # <= array of ranges + if sum(length.(indices)) > 1 + offset = 1 + for r in indices + p = density( + z[r, :]; + title="$(sym)[$offset]", + titlefontsize=10, + label="", + ylabel="Density", + margin=1.5mm, + ) + push!(ps, p) + offset += 1 + end + else + p = density( + z[first(indices), :]; + title="$(sym)", + titlefontsize=10, + label="", + ylabel="Density", + margin=1.5mm, + ) + push!(ps, p) + end + end + + return plot(ps...; layout=(length(ps), 1), size=(500, 2000), margin=4.0mm) +end +``` + +```{julia} +plot_variational_marginals(z, sym2range) +``` + +And let's compare this to using the `NUTS` sampler: + +```{julia} +chain = sample(m, NUTS(), 10_000); +``` + +```{julia} +plot(chain; margin=12.00mm) +``` + +```{julia} +vi_mean = vec(mean(z; dims=2))[[ + union(sym2range[:coefficients]...)..., + union(sym2range[:intercept]...)..., + union(sym2range[:σ²]...)..., +]] +``` + +```{julia} +mcmc_mean = mean(chain, names(chain, :parameters))[:, 2] +``` + +```{julia} +plot(mcmc_mean; xticks=1:1:length(mcmc_mean), linestyle=:dot, label="NUTS") +plot!(vi_mean; linestyle=:dot, label="VI") +``` + +One thing we can look at is simply the squared error between the means: + +```{julia} +sum(abs2, mcmc_mean .- vi_mean) +``` + +That looks pretty good! But let's see how the predictive distributions looks for the two. + +## Prediction + +Similarily to the linear regression tutorial, we're going to compare to multivariate ordinary linear regression using the `GLM` package: + +```{julia} +# Import the GLM package. +using GLM + +# Perform multivariate OLS. +ols = lm( + @formula(MPG ~ Cyl + Disp + HP + DRat + WT + QSec + VS + AM + Gear + Carb), train_cut +) + +# Store our predictions in the original dataframe. +train_cut.OLSPrediction = unstandardize(GLM.predict(ols), train_unstandardized.MPG) +test_cut.OLSPrediction = unstandardize(GLM.predict(ols, test_cut), train_unstandardized.MPG); +``` + +```{julia} +# Make a prediction given an input vector, using mean parameter values from a chain. +function prediction_chain(chain, x) + p = get_params(chain) + α = mean(p.intercept) + β = collect(mean.(p.coefficients)) + return α .+ x * β +end +``` + +```{julia} +# Make a prediction using samples from the variational posterior given an input vector. +function prediction(samples::AbstractVector, sym2ranges, x) + α = mean(samples[union(sym2ranges[:intercept]...)]) + β = vec(mean(samples[union(sym2ranges[:coefficients]...)]; dims=2)) + return α .+ x * β +end + +function prediction(samples::AbstractMatrix, sym2ranges, x) + α = mean(samples[union(sym2ranges[:intercept]...), :]) + β = vec(mean(samples[union(sym2ranges[:coefficients]...), :]; dims=2)) + return α .+ x * β +end +``` + +```{julia} +# Unstandardize the dependent variable. +train_cut.MPG = unstandardize(train_cut.MPG, train_unstandardized.MPG) +test_cut.MPG = unstandardize(test_cut.MPG, train_unstandardized.MPG); +``` + +```{julia} +# Show the first side rows of the modified dataframe. +first(test_cut, 6) +``` + +```{julia} +z = rand(q, 10_000); +``` + +```{julia} +# Calculate the predictions for the training and testing sets using the samples `z` from variational posterior +train_cut.VIPredictions = unstandardize( + prediction(z, sym2range, train), train_unstandardized.MPG +) +test_cut.VIPredictions = unstandardize( + prediction(z, sym2range, test), train_unstandardized.MPG +) + +train_cut.BayesPredictions = unstandardize( + prediction_chain(chain, train), train_unstandardized.MPG +) +test_cut.BayesPredictions = unstandardize( + prediction_chain(chain, test), train_unstandardized.MPG +); +``` + +```{julia} +vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) +bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) +ols_loss1 = mean((train_cut.OLSPrediction - train_cut.MPG) .^ 2) + +vi_loss2 = mean((test_cut.VIPredictions - test_cut.MPG) .^ 2) +bayes_loss2 = mean((test_cut.BayesPredictions - test_cut.MPG) .^ 2) +ols_loss2 = mean((test_cut.OLSPrediction - test_cut.MPG) .^ 2) + +println("Training set: + VI loss: $vi_loss1 + Bayes loss: $bayes_loss1 + OLS loss: $ols_loss1 +Test set: + VI loss: $vi_loss2 + Bayes loss: $bayes_loss2 + OLS loss: $ols_loss2") +``` + + +Interestingly the squared difference between true- and mean-prediction on the test-set is actually *better* for the mean-field variational posterior than for the "true" posterior obtained by MCMC sampling using `NUTS`. But, as Bayesians, we know that the mean doesn't tell the entire story. One quick check is to look at the mean predictions ± standard deviation of the two different approaches: + +```{julia} +z = rand(q, 1000); +preds = mapreduce(hcat, eachcol(z)) do zi + return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) +end + +scatter( + 1:size(test, 1), + mean(preds; dims=2); + yerr=std(preds; dims=2), + label="prediction (mean ± std)", + size=(900, 500), + markersize=8, +) +scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") +xaxis!(1:size(test, 1)) +ylims!(10, 40) +title!("Mean-field ADVI (Normal)") +``` + +```{julia} +preds = mapreduce(hcat, 1:5:size(chain, 1)) do i + return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) +end + +scatter( + 1:size(test, 1), + mean(preds; dims=2); + yerr=std(preds; dims=2), + label="prediction (mean ± std)", + size=(900, 500), + markersize=8, +) +scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") +xaxis!(1:size(test, 1)) +ylims!(10, 40) +title!("MCMC (NUTS)") +``` + +Indeed we see that the MCMC approach generally provides better uncertainty estimates than the mean-field ADVI approach! Good. So all the work we've done to make MCMC fast isn't for nothing. + +## Alternative: provide parameter-to-distribution instead of $q$ with `update` implemented + +As mentioned earlier, it's also possible to just provide the mapping $\theta \mapsto q_{\theta}$ rather than the variational family / initial variational posterior `q`, i.e. use the interface `vi(m, advi, getq, θ_init)` where `getq` is the mapping $\theta \mapsto q_{\theta}$ + +In this section we're going to construct a mean-field approximation to the model by hand using a composition of`Shift` and `Scale` from Bijectors.jl togheter with a standard multivariate Gaussian as the base distribution. + +```{julia} +using Bijectors +``` + +```{julia} +using Bijectors: Scale, Shift +``` + +```{julia} +d = length(q) +base_dist = Turing.DistributionsAD.TuringDiagMvNormal(zeros(d), ones(d)) +``` + +`bijector(model::Turing.Model)` is defined by Turing, and will return a `bijector` which takes you from the space of the latent variables to the real space. In this particular case, this is a mapping `((0, ∞) × ℝ × ℝ¹⁰) → ℝ¹²`. We're interested in using a normal distribution as a base-distribution and transform samples to the latent space, thus we need the inverse mapping from the reals to the latent space: + +```{julia} +to_constrained = inverse(bijector(m)); +``` + +```{julia} +function getq(θ) + d = length(θ) ÷ 2 + A = @inbounds θ[1:d] + b = @inbounds θ[(d + 1):(2 * d)] + + b = to_constrained ∘ Shift(b) ∘ Scale(exp.(A)) + + return transformed(base_dist, b) +end +``` + +```{julia} +q_mf_normal = vi(m, advi, getq, randn(2 * d)); +``` + +```{julia} +p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) # MvDiagNormal + Affine transformation + to_constrained +p2 = plot_variational_marginals(rand(q, 10_000), sym2range) # Turing.meanfield(m) + +plot(p1, p2; layout=(1, 2), size=(800, 2000)) +``` + +As expected, the fits look pretty much identical. + +But using this interface it becomes trivial to go beyond the mean-field assumption we made for the variational posterior, as we'll see in the next section. + +### Relaxing the mean-field assumption + +Here we'll instead consider the variational family to be a full non-diagonal multivariate Gaussian. As in the previous section we'll implement this by transforming a standard multivariate Gaussian using `Scale` and `Shift`, but now `Scale` will instead be using a lower-triangular matrix (representing the Cholesky of the covariance matrix of a multivariate normal) in contrast to the diagonal matrix we used in for the mean-field approximate posterior. + +```{julia} +# Using `ComponentArrays.jl` together with `UnPack.jl` makes our lives much easier. +using ComponentArrays, UnPack +``` + +```{julia} +proto_arr = ComponentArray(; L=zeros(d, d), b=zeros(d)) +proto_axes = getaxes(proto_arr) +num_params = length(proto_arr) + +function getq(θ) + L, b = begin + @unpack L, b = ComponentArray(θ, proto_axes) + LowerTriangular(L), b + end + # For this to represent a covariance matrix we need to ensure that the diagonal is positive. + # We can enforce this by zeroing out the diagonal and then adding back the diagonal exponentiated. + D = Diagonal(diag(L)) + A = L - D + exp(D) # exp for Diagonal is the same as exponentiating only the diagonal entries + + b = to_constrained ∘ Shift(b) ∘ Scale(A) + + return transformed(base_dist, b) +end +``` + +```{julia} +advi = ADVI(10, 20_000) +``` + +```{julia} +q_full_normal = vi( + m, advi, getq, randn(num_params); optimizer=Variational.DecayedADAGrad(1e-2) +); +``` + +Let's have a look at the learned covariance matrix: + +```{julia} +A = q_full_normal.transform.inner.a +``` + +```{julia} +heatmap(cov(A * A')) +``` + +```{julia} +zs = rand(q_full_normal, 10_000); +``` + +```{julia} +p1 = plot_variational_marginals(rand(q_mf_normal, 10_000), sym2range) +p2 = plot_variational_marginals(rand(q_full_normal, 10_000), sym2range) + +plot(p1, p2; layout=(1, 2), size=(800, 2000)) +``` + +So it seems like the "full" ADVI approach, i.e. no mean-field assumption, obtain the same modes as the mean-field approach but with greater uncertainty for some of the `coefficients`. This + +```{julia} +# Unfortunately, it seems like this has quite a high variance which is likely to be due to numerical instability, +# so we consider a larger number of samples. If we get a couple of outliers due to numerical issues, +# these kind affect the mean prediction greatly. +z = rand(q_full_normal, 10_000); +``` + +```{julia} +train_cut.VIFullPredictions = unstandardize( + prediction(z, sym2range, train), train_unstandardized.MPG +) +test_cut.VIFullPredictions = unstandardize( + prediction(z, sym2range, test), train_unstandardized.MPG +); +``` + +```{julia} +vi_loss1 = mean((train_cut.VIPredictions - train_cut.MPG) .^ 2) +vifull_loss1 = mean((train_cut.VIFullPredictions - train_cut.MPG) .^ 2) +bayes_loss1 = mean((train_cut.BayesPredictions - train_cut.MPG) .^ 2) +ols_loss1 = mean((train_cut.OLSPrediction - train_cut.MPG) .^ 2) + +vi_loss2 = mean((test_cut.VIPredictions - test_cut.MPG) .^ 2) +vifull_loss2 = mean((test_cut.VIFullPredictions - test_cut.MPG) .^ 2) +bayes_loss2 = mean((test_cut.BayesPredictions - test_cut.MPG) .^ 2) +ols_loss2 = mean((test_cut.OLSPrediction - test_cut.MPG) .^ 2) + +println("Training set: + VI loss: $vi_loss1 + Bayes loss: $bayes_loss1 + OLS loss: $ols_loss1 +Test set: + VI loss: $vi_loss2 + Bayes loss: $bayes_loss2 + OLS loss: $ols_loss2") +``` + +```{julia} +#| echo: false +# Verify the loss on the test set. +@assert vi_loss2 < 0.01 "VI loss on the test set: $(vi_loss2)" +@assert bayes_loss2 < 0.000001 "Bayes loss on the test set: $(bayes_loss2)" +``` + +```{julia} +z = rand(q_mf_normal, 1000); +preds = mapreduce(hcat, eachcol(z)) do zi + return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) +end + +p1 = scatter( + 1:size(test, 1), + mean(preds; dims=2); + yerr=std(preds; dims=2), + label="prediction (mean ± std)", + size=(900, 500), + markersize=8, +) +scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") +xaxis!(1:size(test, 1)) +ylims!(10, 40) +title!("Mean-field ADVI (Normal)") +``` + +```{julia} +z = rand(q_full_normal, 1000); +preds = mapreduce(hcat, eachcol(z)) do zi + return unstandardize(prediction(zi, sym2range, test), train_unstandardized.MPG) +end + +p2 = scatter( + 1:size(test, 1), + mean(preds; dims=2); + yerr=std(preds; dims=2), + label="prediction (mean ± std)", + size=(900, 500), + markersize=8, +) +scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") +xaxis!(1:size(test, 1)) +ylims!(10, 40) +title!("Full ADVI (Normal)") +``` + +```{julia} +preds = mapreduce(hcat, 1:5:size(chain, 1)) do i + return unstandardize(prediction_chain(chain[i], test), train_unstandardized.MPG) +end + +p3 = scatter( + 1:size(test, 1), + mean(preds; dims=2); + yerr=std(preds; dims=2), + label="prediction (mean ± std)", + size=(900, 500), + markersize=8, +) +scatter!(1:size(test, 1), unstandardize(test_label, train_unstandardized.MPG); label="true") +xaxis!(1:size(test, 1)) +ylims!(10, 40) +title!("MCMC (NUTS)") +``` + +```{julia} +plot(p1, p2, p3; layout=(1, 3), size=(900, 250), label="") +``` + +Here we actually see that indeed both the full ADVI and the MCMC approaches does a much better job of quantifying the uncertainty of predictions for never-before-seen samples, with full ADVI seemingly *underestimating* the variance slightly compared to MCMC. + So now you know how to do perform VI on your Turing.jl model! Great isn't it? \ No newline at end of file diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/10-bayesian-differential-equations/Project.toml b/tutorials/10-bayesian-differential-equations/Project.toml old mode 100644 new mode 100755 index b3c9af768..689c2b205 --- a/tutorials/10-bayesian-differential-equations/Project.toml +++ b/tutorials/10-bayesian-differential-equations/Project.toml @@ -1,8 +1,8 @@ -[deps] -DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[deps] +DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" diff --git a/tutorials/10-bayesian-differential-equations/index.qmd b/tutorials/10-bayesian-differential-equations/index.qmd old mode 100644 new mode 100755 index 169a65bfb..92e301d4a --- a/tutorials/10-bayesian-differential-equations/index.qmd +++ b/tutorials/10-bayesian-differential-equations/index.qmd @@ -1,450 +1,446 @@ ---- -title: Bayesian Estimation of Differential Equations -engine: julia ---- - -Most of the scientific community deals with the basic problem of trying to mathematically model the reality around them and this often involves dynamical systems. The general trend to model these complex dynamical systems is through the use of differential equations. -Differential equation models often have non-measurable parameters. -The popular “forward-problem” of simulation consists of solving the differential equations for a given set of parameters, the “inverse problem” to simulation, known as parameter estimation, is the process of utilizing data to determine these model parameters. -Bayesian inference provides a robust approach to parameter estimation with quantified uncertainty. - -```{julia} -using Turing -using DifferentialEquations - -# Load StatsPlots for visualizations and diagnostics. -using StatsPlots - -using LinearAlgebra - -# Set a seed for reproducibility. -using Random -Random.seed!(14); -``` - -## The Lotka-Volterra Model - -The Lotka–Volterra equations, also known as the predator–prey equations, are a pair of first-order nonlinear differential equations. -These differential equations are frequently used to describe the dynamics of biological systems in which two species interact, one as a predator and the other as prey. -The populations change through time according to the pair of equations - -$$ -\begin{aligned} -\frac{\mathrm{d}x}{\mathrm{d}t} &= (\alpha - \beta y(t))x(t), \\ -\frac{\mathrm{d}y}{\mathrm{d}t} &= (\delta x(t) - \gamma)y(t) -\end{aligned} -$$ - -where $x(t)$ and $y(t)$ denote the populations of prey and predator at time $t$, respectively, and $\alpha, \beta, \gamma, \delta$ are positive parameters. - -We implement the Lotka-Volterra model and simulate it with parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. - -```{julia} -# Define Lotka-Volterra model. -function lotka_volterra(du, u, p, t) - # Model parameters. - α, β, γ, δ = p - # Current state. - x, y = u - - # Evaluate differential equations. - du[1] = (α - β * y) * x # prey - du[2] = (δ * x - γ) * y # predator - - return nothing -end - -# Define initial-value problem. -u0 = [1.0, 1.0] -p = [1.5, 1.0, 3.0, 1.0] -tspan = (0.0, 10.0) -prob = ODEProblem(lotka_volterra, u0, tspan, p) - -# Plot simulation. -plot(solve(prob, Tsit5())) -``` - -We generate noisy observations to use for the parameter estimation tasks in this tutorial. -With the [`saveat` argument](https://docs.sciml.ai/latest/basics/common_solver_opts/) we specify that the solution is stored only at `0.1` time units. -To make the example more realistic we add random normally distributed noise to the simulation. - -```{julia} -sol = solve(prob, Tsit5(); saveat=0.1) -odedata = Array(sol) + 0.8 * randn(size(Array(sol))) - -# Plot simulation and noisy observations. -plot(sol; alpha=0.3) -scatter!(sol.t, odedata'; color=[1 2], label="") -``` - -Alternatively, we can use real-world data from Hudson’s Bay Company records (an Stan implementation with slightly different priors can be found here: https://mc-stan.org/users/documentation/case-studies/lotka-volterra-predator-prey.html). - -## Direct Handling of Bayesian Estimation with Turing - -Previously, functions in Turing and DifferentialEquations were not inter-composable, so Bayesian inference of differential equations needed to be handled by another package called [DiffEqBayes.jl](https://github.com/SciML/DiffEqBayes.jl) (note that DiffEqBayes works also with CmdStan.jl, Turing.jl, DynamicHMC.jl and ApproxBayes.jl - see the [DiffEqBayes docs](https://docs.sciml.ai/latest/analysis/parameter_estimation/#Bayesian-Methods-1) for more info). - -Nowadays, however, Turing and DifferentialEquations are completely composable and we can just simulate differential equations inside a Turing `@model`. -Therefore, we write the Lotka-Volterra parameter estimation problem using the Turing `@model` macro as below: - - -```{julia} -@model function fitlv(data, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) - γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) - δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) - - # Simulate Lotka-Volterra model. - p = [α, β, γ, δ] - predicted = solve(prob, Tsit5(); p=p, saveat=0.1) - - # Observations. - for i in 1:length(predicted) - data[:, i] ~ MvNormal(predicted[i], σ^2 * I) - end - - return nothing -end - -model = fitlv(odedata, prob) - -# Sample 3 independent chains with forward-mode automatic differentiation (the default). -chain = sample(model, NUTS(), MCMCSerial(), 1000, 3; progress=false) -``` - -The estimated parameters are close to the parameter values the observations were generated with. -We can also check visually that the chains have converged. - -```{julia} -plot(chain) -``` - -### Data retrodiction - -In Bayesian analysis it is often useful to retrodict the data, i.e. generate simulated data using samples from the posterior distribution, and compare to the original data (see for instance section 3.3.2 - model checking of McElreath's book "Statistical Rethinking"). -Here, we solve the ODE for 300 randomly picked posterior samples in the `chain`. -We plot the ensemble of solutions to check if the solution resembles the data. -The 300 retrodicted time courses from the posterior are plotted in gray, the noisy observations are shown as blue and red dots, and the green and purple lines are the ODE solution that was used to generate the data. - -```{julia} -plot(; legend=false) -posterior_samples = sample(chain[[:α, :β, :γ, :δ]], 300; replace=false) -for p in eachrow(Array(posterior_samples)) - sol_p = solve(prob, Tsit5(); p=p, saveat=0.1) - plot!(sol_p; alpha=0.1, color="#BBBBBB") -end - -# Plot simulation and noisy observations. -plot!(sol; color=[1 2], linewidth=1) -scatter!(sol.t, odedata'; color=[1 2]) -``` - -We can see that, even though we added quite a bit of noise to the data the posterior distribution reproduces quite accurately the "true" ODE solution. - -## Lotka-Volterra model without data of prey - -One can also perform parameter inference for a Lotka-Volterra model with incomplete data. -For instance, let us suppose we have only observations of the predators but not of the prey. -I.e., we fit the model only to the $y$ variable of the system without providing any data for $x$: - -```{julia} -@model function fitlv2(data::AbstractVector, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) - γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) - δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) - - # Simulate Lotka-Volterra model but save only the second state of the system (predators). - p = [α, β, γ, δ] - predicted = solve(prob, Tsit5(); p=p, saveat=0.1, save_idxs=2) - - # Observations of the predators. - data ~ MvNormal(predicted.u, σ^2 * I) - - return nothing -end - -model2 = fitlv2(odedata[2, :], prob) - -# Sample 3 independent chains. -chain2 = sample(model2, NUTS(0.45), MCMCSerial(), 5000, 3; progress=false) -``` - -Again we inspect the trajectories of 300 randomly selected posterior samples. - -```{julia} -plot(; legend=false) -posterior_samples = sample(chain2[[:α, :β, :γ, :δ]], 300; replace=false) -for p in eachrow(Array(posterior_samples)) - sol_p = solve(prob, Tsit5(); p=p, saveat=0.1) - plot!(sol_p; alpha=0.1, color="#BBBBBB") -end - -# Plot simulation and noisy observations. -plot!(sol; color=[1 2], linewidth=1) -scatter!(sol.t, odedata'; color=[1 2]) -``` - -Note that here the observations of the prey (blue dots) were not used in the parameter estimation! -Yet, the model can predict the values of $x$ relatively accurately, albeit with a wider distribution of solutions, reflecting the greater uncertainty in the prediction of the $x$ values. - -## Inference of Delay Differential Equations - -Here we show an example of inference with another type of differential equation: a Delay Differential Equation (DDE). -DDEs are differential equations where derivatives are function of values at an earlier point in time. -This is useful to model a delayed effect, like incubation time of a virus for instance. - -Here is a delayed version of the Lokta-Voltera system: - -$$ -\begin{aligned} -\frac{\mathrm{d}x}{\mathrm{d}t} &= \alpha x(t-\tau) - \beta y(t) x(t),\\ -\frac{\mathrm{d}y}{\mathrm{d}t} &= - \gamma y(t) + \delta x(t) y(t), -\end{aligned} -$$ - -where $\tau$ is a (positive) delay and $x(t-\tau)$ is the variable $x$ at an earlier time point $t - \tau$. - -The initial-value problem of the delayed system can be implemented as a [`DDEProblem`](https://diffeq.sciml.ai/stable/tutorials/dde_example/). -As described in the [DDE example](https://diffeq.sciml.ai/stable/tutorials/dde_example/), here the function `h` is the history function that can be used to obtain a state at an earlier time point. -Again we use parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. -Moreover, we assume $x(t) = 1$ for $t < 0$. - -```{julia} -function delay_lotka_volterra(du, u, h, p, t) - # Model parameters. - α, β, γ, δ = p - - # Current state. - x, y = u - # Evaluate differential equations - du[1] = α * h(p, t - 1; idxs=1) - β * x * y - du[2] = -γ * y + δ * x * y - - return nothing -end - -# Define initial-value problem. -p = (1.5, 1.0, 3.0, 1.0) -u0 = [1.0; 1.0] -tspan = (0.0, 10.0) -h(p, t; idxs::Int) = 1.0 -prob_dde = DDEProblem(delay_lotka_volterra, u0, h, tspan, p); -``` - -We generate observations by adding normally distributed noise to the results of our simulations. - -```{julia} -#| eval: false -sol_dde = solve(prob_dde; saveat=0.1) -ddedata = Array(sol_dde) + 0.5 * randn(size(sol_dde)) - -# Plot simulation and noisy observations. -plot(sol_dde) -scatter!(sol_dde.t, ddedata'; color=[1 2], label="") -``` - -Now we define the Turing model for the Lotka-Volterra model with delay and sample 3 independent chains. - -```{julia} -#| eval: false -@model function fitlv_dde(data, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) - γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) - δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) - - # Simulate Lotka-Volterra model. - p = [α, β, γ, δ] - predicted = solve(prob, MethodOfSteps(Tsit5()); p=p, saveat=0.1) - - # Observations. - for i in 1:length(predicted) - data[:, i] ~ MvNormal(predicted[i], σ^2 * I) - end -end - -model_dde = fitlv_dde(ddedata, prob_dde) - -# Sample 3 independent chains. -chain_dde = sample(model_dde, NUTS(), MCMCSerial(), 300, 3; progress=false) -``` - -```{julia} -#| eval: false -plot(chain_dde) -``` - -Finally, plot trajectories of 300 randomly selected samples from the posterior. -Again, the dots indicate our observations, the colored lines are the "true" simulations without noise, and the gray lines are trajectories from the posterior samples. - -```{julia} -#| eval: false -plot(; legend=false) -posterior_samples = sample(chain_dde[[:α, :β, :γ, :δ]], 300; replace=false) -for p in eachrow(Array(posterior_samples)) - sol_p = solve(prob_dde, MethodOfSteps(Tsit5()); p=p, saveat=0.1) - plot!(sol_p; alpha=0.1, color="#BBBBBB") -end - -# Plot simulation and noisy observations. -plot!(sol_dde; color=[1 2], linewidth=1) -scatter!(sol_dde.t, ddedata'; color=[1 2]) -``` - -The fit is pretty good even though the data was quite noisy to start. - -## Scaling to Large Models: Adjoint Sensitivities - -DifferentialEquations.jl's efficiency for large stiff models has been shown in multiple [benchmarks](https://github.com/SciML/DiffEqBenchmarks.jl). -To learn more about how to optimize solving performance for stiff problems you can take a look at the [docs](https://docs.sciml.ai/latest/tutorials/advanced_ode_example/). - -[Sensitivity analysis](https://docs.sciml.ai/latest/analysis/sensitivity/), or automatic differentiation (AD) of the solver, is provided by the DiffEq suite. -The model sensitivities are the derivatives of the solution with respect to the parameters. -Specifically, the local sensitivity of the solution to a parameter is defined by how much the solution would change by changes in the parameter. -Sensitivity analysis provides a cheap way to calculate the gradient of the solution which can be used in parameter estimation and other optimization tasks. - -The AD ecosystem in Julia allows you to switch between forward mode, reverse mode, source to source and other choices of AD and have it work with any Julia code. -For a user to make use of this within [SciML](https://sciml.ai), [high level interactions in `solve`](https://sensitivity.sciml.ai/dev/ad_examples/differentiating_ode/) automatically plug into those AD systems to allow for choosing advanced sensitivity analysis (derivative calculation) [methods](https://sensitivity.sciml.ai/dev/manual/differential_equation_sensitivities/). - -More theoretical details on these methods can be found at: https://docs.sciml.ai/latest/extras/sensitivity_math/. - -While these sensitivity analysis methods may seem complicated, using them is dead simple. -Here is a version of the Lotka-Volterra model using adjoint sensitivities. - -All we have to do is switch the AD backend to one of the adjoint-compatible backends (ReverseDiff, Tracker, or Zygote)! -Notice that on this model adjoints are slower. -This is because adjoints have a higher overhead on small parameter models and therefore we suggest using these methods only for models with around 100 parameters or more. -For more details, see https://arxiv.org/abs/1812.01892. - -```{julia} -#| eval: false -using Zygote, SciMLSensitivity - -# Sample a single chain with 1000 samples using Zygote. -setadbackend(:zygote) -sample(model, NUTS(), 1000; progress=false) -``` - -If desired, we can control the sensitivity analysis method that is used by providing the `sensealg` keyword argument to `solve`. -Here we will not choose a `sensealg` and let it use the default choice: - -```{julia} -#| eval: false -@model function fitlv_sensealg(data, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) - γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) - δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) - - # Simulate Lotka-Volterra model and use a specific algorithm for computing sensitivities. - p = [α, β, γ, δ] - predicted = solve(prob; p=p, saveat=0.1) - - # Observations. - for i in 1:length(predicted) - data[:, i] ~ MvNormal(predicted[i], σ^2 * I) - end - - return nothing -end; - -model_sensealg = fitlv_sensealg(odedata, prob) - -# Sample a single chain with 1000 samples using Zygote. -setadbackend(:zygote) -sample(model_sensealg, NUTS(), 1000; progress=false) -``` - -For more examples of adjoint usage on large parameter models, consult the [DiffEqFlux documentation](https://diffeqflux.sciml.ai/dev/). - -## Inference of a Stochastic Differential Equation - -A [Stochastic Differential Equation (SDE)](https://diffeq.sciml.ai/stable/tutorials/sde_example/) is a differential equation that has a stochastic (noise) term in the expression of the derivatives. -Here we fit a stochastic version of the Lokta-Volterra system. - -We use a quasi-likelihood approach in which all trajectories of a solution are compared instead of a reduction such as mean, this increases the robustness of fitting and makes the likelihood more identifiable. -We use SOSRI to solve the equation. - -```{julia} -#| eval: false -u0 = [1.0, 1.0] -tspan = (0.0, 10.0) -function multiplicative_noise!(du, u, p, t) - x, y = u - du[1] = p[5] * x - return du[2] = p[6] * y -end -p = [1.5, 1.0, 3.0, 1.0, 0.1, 0.1] - -function lotka_volterra!(du, u, p, t) - x, y = u - α, β, γ, δ = p - du[1] = dx = α * x - β * x * y - return du[2] = dy = δ * x * y - γ * y -end - -prob_sde = SDEProblem(lotka_volterra!, multiplicative_noise!, u0, tspan, p) - -ensembleprob = EnsembleProblem(prob_sde) -data = solve(ensembleprob, SOSRI(); saveat=0.1, trajectories=1000) -plot(EnsembleSummary(data)) -``` - -```{julia} -#| eval: false -@model function fitlv_sde(data, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.3, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) - γ ~ truncated(Normal(3.2, 0.25); lower=2.2, upper=4) - δ ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) - ϕ1 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) - ϕ2 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) - - # Simulate stochastic Lotka-Volterra model. - p = [α, β, γ, δ, ϕ1, ϕ2] - predicted = solve(prob, SOSRI(); p=p, saveat=0.1) - - # Early exit if simulation could not be computed successfully. - if predicted.retcode !== :Success - Turing.@addlogprob! -Inf - return nothing - end - - # Observations. - for i in 1:length(predicted) - data[:, i] ~ MvNormal(predicted[i], σ^2 * I) - end - - return nothing -end; -``` - -The probabilistic nature of the SDE solution makes the likelihood function noisy which poses a challenge for NUTS since the gradient is changing with every calculation. -Therefore we use NUTS with a low target acceptance rate of `0.25` and specify a set of initial parameters. -SGHMC might be a more suitable algorithm to be used here. - -```{julia} -#| eval: false -model_sde = fitlv_sde(odedata, prob_sde) - -setadbackend(:forwarddiff) -chain_sde = sample( - model_sde, - NUTS(0.25), - 5000; - initial_params=[1.5, 1.3, 1.2, 2.7, 1.2, 0.12, 0.12], - progress=false, -) -plot(chain_sde) -``` +--- +title: Bayesian Estimation of Differential Equations +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +Most of the scientific community deals with the basic problem of trying to mathematically model the reality around them and this often involves dynamical systems. The general trend to model these complex dynamical systems is through the use of differential equations. +Differential equation models often have non-measurable parameters. +The popular “forward-problem” of simulation consists of solving the differential equations for a given set of parameters, the “inverse problem” to simulation, known as parameter estimation, is the process of utilizing data to determine these model parameters. +Bayesian inference provides a robust approach to parameter estimation with quantified uncertainty. + +```{julia} +using Turing +using DifferentialEquations + +# Load StatsPlots for visualizations and diagnostics. +using StatsPlots + +using LinearAlgebra + +# Set a seed for reproducibility. +using Random +Random.seed!(14); +``` + +## The Lotka-Volterra Model + +The Lotka–Volterra equations, also known as the predator–prey equations, are a pair of first-order nonlinear differential equations. +These differential equations are frequently used to describe the dynamics of biological systems in which two species interact, one as a predator and the other as prey. +The populations change through time according to the pair of equations + +$$ +\begin{aligned} +\frac{\mathrm{d}x}{\mathrm{d}t} &= (\alpha - \beta y(t))x(t), \\ +\frac{\mathrm{d}y}{\mathrm{d}t} &= (\delta x(t) - \gamma)y(t) +\end{aligned} +$$ + +where $x(t)$ and $y(t)$ denote the populations of prey and predator at time $t$, respectively, and $\alpha, \beta, \gamma, \delta$ are positive parameters. + +We implement the Lotka-Volterra model and simulate it with parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. + +```{julia} +# Define Lotka-Volterra model. +function lotka_volterra(du, u, p, t) + # Model parameters. + α, β, γ, δ = p + # Current state. + x, y = u + + # Evaluate differential equations. + du[1] = (α - β * y) * x # prey + du[2] = (δ * x - γ) * y # predator + + return nothing +end + +# Define initial-value problem. +u0 = [1.0, 1.0] +p = [1.5, 1.0, 3.0, 1.0] +tspan = (0.0, 10.0) +prob = ODEProblem(lotka_volterra, u0, tspan, p) + +# Plot simulation. +plot(solve(prob, Tsit5())) +``` + +We generate noisy observations to use for the parameter estimation tasks in this tutorial. +With the [`saveat` argument](https://docs.sciml.ai/latest/basics/common_solver_opts/) we specify that the solution is stored only at `0.1` time units. +To make the example more realistic we add random normally distributed noise to the simulation. + +```{julia} +sol = solve(prob, Tsit5(); saveat=0.1) +odedata = Array(sol) + 0.8 * randn(size(Array(sol))) + +# Plot simulation and noisy observations. +plot(sol; alpha=0.3) +scatter!(sol.t, odedata'; color=[1 2], label="") +``` + +Alternatively, we can use real-world data from Hudson’s Bay Company records (an Stan implementation with slightly different priors can be found here: https://mc-stan.org/users/documentation/case-studies/lotka-volterra-predator-prey.html). + +## Direct Handling of Bayesian Estimation with Turing + +Previously, functions in Turing and DifferentialEquations were not inter-composable, so Bayesian inference of differential equations needed to be handled by another package called [DiffEqBayes.jl](https://github.com/SciML/DiffEqBayes.jl) (note that DiffEqBayes works also with CmdStan.jl, Turing.jl, DynamicHMC.jl and ApproxBayes.jl - see the [DiffEqBayes docs](https://docs.sciml.ai/latest/analysis/parameter_estimation/#Bayesian-Methods-1) for more info). + +Nowadays, however, Turing and DifferentialEquations are completely composable and we can just simulate differential equations inside a Turing `@model`. +Therefore, we write the Lotka-Volterra parameter estimation problem using the Turing `@model` macro as below: + + +```{julia} +@model function fitlv(data, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) + γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) + δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) + + # Simulate Lotka-Volterra model. + p = [α, β, γ, δ] + predicted = solve(prob, Tsit5(); p=p, saveat=0.1) + + # Observations. + for i in 1:length(predicted) + data[:, i] ~ MvNormal(predicted[i], σ^2 * I) + end + + return nothing +end + +model = fitlv(odedata, prob) + +# Sample 3 independent chains with forward-mode automatic differentiation (the default). +chain = sample(model, NUTS(), MCMCSerial(), 1000, 3; progress=false) +``` + +The estimated parameters are close to the parameter values the observations were generated with. +We can also check visually that the chains have converged. + +```{julia} +plot(chain) +``` + +### Data retrodiction + +In Bayesian analysis it is often useful to retrodict the data, i.e. generate simulated data using samples from the posterior distribution, and compare to the original data (see for instance section 3.3.2 - model checking of McElreath's book "Statistical Rethinking"). +Here, we solve the ODE for 300 randomly picked posterior samples in the `chain`. +We plot the ensemble of solutions to check if the solution resembles the data. +The 300 retrodicted time courses from the posterior are plotted in gray, the noisy observations are shown as blue and red dots, and the green and purple lines are the ODE solution that was used to generate the data. + +```{julia} +plot(; legend=false) +posterior_samples = sample(chain[[:α, :β, :γ, :δ]], 300; replace=false) +for p in eachrow(Array(posterior_samples)) + sol_p = solve(prob, Tsit5(); p=p, saveat=0.1) + plot!(sol_p; alpha=0.1, color="#BBBBBB") +end + +# Plot simulation and noisy observations. +plot!(sol; color=[1 2], linewidth=1) +scatter!(sol.t, odedata'; color=[1 2]) +``` + +We can see that, even though we added quite a bit of noise to the data the posterior distribution reproduces quite accurately the "true" ODE solution. + +## Lotka-Volterra model without data of prey + +One can also perform parameter inference for a Lotka-Volterra model with incomplete data. +For instance, let us suppose we have only observations of the predators but not of the prey. +I.e., we fit the model only to the $y$ variable of the system without providing any data for $x$: + +```{julia} +@model function fitlv2(data::AbstractVector, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) + γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) + δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) + + # Simulate Lotka-Volterra model but save only the second state of the system (predators). + p = [α, β, γ, δ] + predicted = solve(prob, Tsit5(); p=p, saveat=0.1, save_idxs=2) + + # Observations of the predators. + data ~ MvNormal(predicted.u, σ^2 * I) + + return nothing +end + +model2 = fitlv2(odedata[2, :], prob) + +# Sample 3 independent chains. +chain2 = sample(model2, NUTS(0.45), MCMCSerial(), 5000, 3; progress=false) +``` + +Again we inspect the trajectories of 300 randomly selected posterior samples. + +```{julia} +plot(; legend=false) +posterior_samples = sample(chain2[[:α, :β, :γ, :δ]], 300; replace=false) +for p in eachrow(Array(posterior_samples)) + sol_p = solve(prob, Tsit5(); p=p, saveat=0.1) + plot!(sol_p; alpha=0.1, color="#BBBBBB") +end + +# Plot simulation and noisy observations. +plot!(sol; color=[1 2], linewidth=1) +scatter!(sol.t, odedata'; color=[1 2]) +``` + +Note that here the observations of the prey (blue dots) were not used in the parameter estimation! +Yet, the model can predict the values of $x$ relatively accurately, albeit with a wider distribution of solutions, reflecting the greater uncertainty in the prediction of the $x$ values. + +## Inference of Delay Differential Equations + +Here we show an example of inference with another type of differential equation: a Delay Differential Equation (DDE). +DDEs are differential equations where derivatives are function of values at an earlier point in time. +This is useful to model a delayed effect, like incubation time of a virus for instance. + +Here is a delayed version of the Lokta-Voltera system: + +$$ +\begin{aligned} +\frac{\mathrm{d}x}{\mathrm{d}t} &= \alpha x(t-\tau) - \beta y(t) x(t),\\ +\frac{\mathrm{d}y}{\mathrm{d}t} &= - \gamma y(t) + \delta x(t) y(t), +\end{aligned} +$$ + +where $\tau$ is a (positive) delay and $x(t-\tau)$ is the variable $x$ at an earlier time point $t - \tau$. + +The initial-value problem of the delayed system can be implemented as a [`DDEProblem`](https://diffeq.sciml.ai/stable/tutorials/dde_example/). +As described in the [DDE example](https://diffeq.sciml.ai/stable/tutorials/dde_example/), here the function `h` is the history function that can be used to obtain a state at an earlier time point. +Again we use parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. +Moreover, we assume $x(t) = 1$ for $t < 0$. + +```{julia} +function delay_lotka_volterra(du, u, h, p, t) + # Model parameters. + α, β, γ, δ = p + + # Current state. + x, y = u + # Evaluate differential equations + du[1] = α * h(p, t - 1; idxs=1) - β * x * y + du[2] = -γ * y + δ * x * y + + return nothing +end + +# Define initial-value problem. +p = (1.5, 1.0, 3.0, 1.0) +u0 = [1.0; 1.0] +tspan = (0.0, 10.0) +h(p, t; idxs::Int) = 1.0 +prob_dde = DDEProblem(delay_lotka_volterra, u0, h, tspan, p); +``` + +We generate observations by adding normally distributed noise to the results of our simulations. + +```{julia} +sol_dde = solve(prob_dde; saveat=0.1) +ddedata = Array(sol_dde) + 0.5 * randn(size(sol_dde)) + +# Plot simulation and noisy observations. +plot(sol_dde) +scatter!(sol_dde.t, ddedata'; color=[1 2], label="") +``` + +Now we define the Turing model for the Lotka-Volterra model with delay and sample 3 independent chains. + +```{julia} +@model function fitlv_dde(data, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) + γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) + δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) + + # Simulate Lotka-Volterra model. + p = [α, β, γ, δ] + predicted = solve(prob, MethodOfSteps(Tsit5()); p=p, saveat=0.1) + + # Observations. + for i in 1:length(predicted) + data[:, i] ~ MvNormal(predicted[i], σ^2 * I) + end +end + +model_dde = fitlv_dde(ddedata, prob_dde) + +# Sample 3 independent chains. +chain_dde = sample(model_dde, NUTS(), MCMCSerial(), 300, 3; progress=false) +``` + +```{julia} +plot(chain_dde) +``` + +Finally, plot trajectories of 300 randomly selected samples from the posterior. +Again, the dots indicate our observations, the colored lines are the "true" simulations without noise, and the gray lines are trajectories from the posterior samples. + +```{julia} +plot(; legend=false) +posterior_samples = sample(chain_dde[[:α, :β, :γ, :δ]], 300; replace=false) +for p in eachrow(Array(posterior_samples)) + sol_p = solve(prob_dde, MethodOfSteps(Tsit5()); p=p, saveat=0.1) + plot!(sol_p; alpha=0.1, color="#BBBBBB") +end + +# Plot simulation and noisy observations. +plot!(sol_dde; color=[1 2], linewidth=1) +scatter!(sol_dde.t, ddedata'; color=[1 2]) +``` + +The fit is pretty good even though the data was quite noisy to start. + +## Scaling to Large Models: Adjoint Sensitivities + +DifferentialEquations.jl's efficiency for large stiff models has been shown in multiple [benchmarks](https://github.com/SciML/DiffEqBenchmarks.jl). +To learn more about how to optimize solving performance for stiff problems you can take a look at the [docs](https://docs.sciml.ai/latest/tutorials/advanced_ode_example/). + +[Sensitivity analysis](https://docs.sciml.ai/latest/analysis/sensitivity/), or automatic differentiation (AD) of the solver, is provided by the DiffEq suite. +The model sensitivities are the derivatives of the solution with respect to the parameters. +Specifically, the local sensitivity of the solution to a parameter is defined by how much the solution would change by changes in the parameter. +Sensitivity analysis provides a cheap way to calculate the gradient of the solution which can be used in parameter estimation and other optimization tasks. + +The AD ecosystem in Julia allows you to switch between forward mode, reverse mode, source to source and other choices of AD and have it work with any Julia code. +For a user to make use of this within [SciML](https://sciml.ai), [high level interactions in `solve`](https://sensitivity.sciml.ai/dev/ad_examples/differentiating_ode/) automatically plug into those AD systems to allow for choosing advanced sensitivity analysis (derivative calculation) [methods](https://sensitivity.sciml.ai/dev/manual/differential_equation_sensitivities/). + +More theoretical details on these methods can be found at: https://docs.sciml.ai/latest/extras/sensitivity_math/. + +While these sensitivity analysis methods may seem complicated, using them is dead simple. +Here is a version of the Lotka-Volterra model using adjoint sensitivities. + +All we have to do is switch the AD backend to one of the adjoint-compatible backends (ReverseDiff, Tracker, or Zygote)! +Notice that on this model adjoints are slower. +This is because adjoints have a higher overhead on small parameter models and therefore we suggest using these methods only for models with around 100 parameters or more. +For more details, see https://arxiv.org/abs/1812.01892. + +```{julia} +using Zygote, SciMLSensitivity + +# Sample a single chain with 1000 samples using Zygote. +sample(model, NUTS(;adtype=AutoZygote()), 1000; progress=false) +``` + +If desired, we can control the sensitivity analysis method that is used by providing the `sensealg` keyword argument to `solve`. +Here we will not choose a `sensealg` and let it use the default choice: + +```{julia} +@model function fitlv_sensealg(data, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.5, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.5); lower=0, upper=2) + γ ~ truncated(Normal(3.0, 0.5); lower=1, upper=4) + δ ~ truncated(Normal(1.0, 0.5); lower=0, upper=2) + + # Simulate Lotka-Volterra model and use a specific algorithm for computing sensitivities. + p = [α, β, γ, δ] + predicted = solve(prob; p=p, saveat=0.1) + + # Observations. + for i in 1:length(predicted) + data[:, i] ~ MvNormal(predicted[i], σ^2 * I) + end + + return nothing +end; + +model_sensealg = fitlv_sensealg(odedata, prob) + +# Sample a single chain with 1000 samples using Zygote. +sample(model_sensealg, NUTS(;adtype=AutoZygote()), 1000; progress=false) +``` + +For more examples of adjoint usage on large parameter models, consult the [DiffEqFlux documentation](https://diffeqflux.sciml.ai/dev/). + +## Inference of a Stochastic Differential Equation + +A [Stochastic Differential Equation (SDE)](https://diffeq.sciml.ai/stable/tutorials/sde_example/) is a differential equation that has a stochastic (noise) term in the expression of the derivatives. +Here we fit a stochastic version of the Lokta-Volterra system. + +We use a quasi-likelihood approach in which all trajectories of a solution are compared instead of a reduction such as mean, this increases the robustness of fitting and makes the likelihood more identifiable. +We use SOSRI to solve the equation. + +```{julia} +u0 = [1.0, 1.0] +tspan = (0.0, 10.0) +function multiplicative_noise!(du, u, p, t) + x, y = u + du[1] = p[5] * x + return du[2] = p[6] * y +end +p = [1.5, 1.0, 3.0, 1.0, 0.1, 0.1] + +function lotka_volterra!(du, u, p, t) + x, y = u + α, β, γ, δ = p + du[1] = dx = α * x - β * x * y + return du[2] = dy = δ * x * y - γ * y +end + +prob_sde = SDEProblem(lotka_volterra!, multiplicative_noise!, u0, tspan, p) + +ensembleprob = EnsembleProblem(prob_sde) +data = solve(ensembleprob, SOSRI(); saveat=0.1, trajectories=1000) +plot(EnsembleSummary(data)) +``` + +```{julia} +@model function fitlv_sde(data, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.3, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) + γ ~ truncated(Normal(3.2, 0.25); lower=2.2, upper=4) + δ ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) + ϕ1 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) + ϕ2 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) + + # Simulate stochastic Lotka-Volterra model. + p = [α, β, γ, δ, ϕ1, ϕ2] + predicted = solve(prob, SOSRI(); p=p, saveat=0.1) + + # Early exit if simulation could not be computed successfully. + if predicted.retcode !== :Success + Turing.@addlogprob! -Inf + return nothing + end + + # Observations. + for i in 1:length(predicted) + data[:, i] ~ MvNormal(predicted[i], σ^2 * I) + end + + return nothing +end; +``` + +The probabilistic nature of the SDE solution makes the likelihood function noisy which poses a challenge for NUTS since the gradient is changing with every calculation. +Therefore we use NUTS with a low target acceptance rate of `0.25` and specify a set of initial parameters. +SGHMC might be a more suitable algorithm to be used here. + +```{julia} +model_sde = fitlv_sde(odedata, prob_sde) + +setadbackend(:forwarddiff) +chain_sde = sample( + model_sde, + NUTS(0.25), + 5000; + initial_params=[1.5, 1.3, 1.2, 2.7, 1.2, 0.12, 0.12], + progress=false, +) +plot(chain_sde) +``` diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/11-probabilistic-pca/Project.toml b/tutorials/11-probabilistic-pca/Project.toml old mode 100644 new mode 100755 index 4f0bfa2bf..a9a44d433 --- a/tutorials/11-probabilistic-pca/Project.toml +++ b/tutorials/11-probabilistic-pca/Project.toml @@ -1,9 +1,9 @@ -[deps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Measures = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd old mode 100644 new mode 100755 index f8edd050e..b1d04981b --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -1,378 +1,387 @@ ---- -title: Probabilistic Principal Component Analysis (p-PCA) -engine: julia ---- - -## Overview of PCA - -Principal component analysis (PCA) is a fundamental technique to analyse and visualise data. -It is an unsupervised learning method mainly used for dimensionality reduction. - -For example, we have a data matrix $\mathbf{X} \in \mathbb{R}^{N \times D}$, and we would like to extract $k \ll D$ principal components which captures most of the information from the original matrix. -The goal is to understand $\mathbf{X}$ through a lower dimensional subspace (e.g. two-dimensional subspace for visualisation convenience) spanned by the principal components. - -In order to project the original data matrix into low dimensions, we need to find the principal directions where most of the variations of $\mathbf{X}$ lie in. -Traditionally, this is implemented via [singular value decomposition (SVD)](https://en.wikipedia.org/wiki/Singular_value_decomposition) which provides a robust and accurate computational framework for decomposing matrix into products of rotation-scaling-rotation matrices, particularly for large datasets(see an illustration [here](https://intoli.com/blog/pca-and-svd/)): - -$$ -\mathbf{X}_{N \times D} = \mathbf{U}_{N \times r} \times \boldsymbol{\Sigma}_{r \times r} \times \mathbf{V}^T_{r \times D} -$$ - -where $\Sigma_{r \times r}$ contains only $r := \operatorname{rank} \mathbf{X} \leq \min\{N,D\}$ non-zero singular values of $\mathbf{X}$. -If we pad $\Sigma$ with zeros and add arbitrary orthonormal columns to $\mathbf{U}$ and $\mathbf{V}$, we obtain the more compact form:[^1] - -$$ -\mathbf{X}_{N \times D} = \mathbf{U}_{N \times N} \mathbf{\Sigma}_{N \times D} \mathbf{V}_{D \times D}^T -$$ - -where $\mathbf{U}$ and $\mathbf{V}$ are unitary matrices (i.e. with orthonormal columns). -Such a decomposition always exists for any matrix. -Columns of $\mathbf{V}$ are the principal directions/axes. -The percentage of variations explained can be calculated using the ratios of singular values.[^3] - -Here we take a probabilistic perspective. -For more details and a mathematical derivation, we recommend Bishop's textbook (Christopher M. Bishop, Pattern Recognition and Machine Learning, 2006). -The idea of proabilistic PCA is to find a latent variable $z$ that can be used to describe the hidden structure in a dataset.[^2] -Consider a data set $\mathbf{X}_{D \times N}=\{x_i\}$ with $i=1,2,...,N$ data points, where each data point $x_i$ is $D$-dimensional (i.e. $x_i \in \mathcal{R}^D$). -Note that, here we use the flipped version of the data matrix. We aim to represent the original $n$ dimensional vector using a lower dimensional a latent variable $z_i \in \mathcal{R}^k$. - -We first assume that each latent variable $z_i$ is normally distributed: - -$$ -z_i \sim \mathcal{N}(0, I) -$$ - -and the corresponding data point is generated via projection: - -$$ -x_i | z_i \sim \mathcal{N}(\mathbf{W} z_i + \boldsymbol{μ}, \sigma^2 \mathbf{I}) -$$ - -where the projection matrix $\mathbf{W}_{D \times k}$ accommodates the principal axes. -The above formula expresses $x_i$ as a linear combination of the basis columns in the projection matrix `W`, where the combination coefficients sit in `z_i` (they are the coordinats of `x_i` in the new $k$-dimensional space.). -We can also express the above formula in matrix form: $\mathbf{X}_{D \times N} \approx \mathbf{W}_{D \times k} \mathbf{Z}_{k \times N}$. -We are interested in inferring $\mathbf{W}$, $μ$ and $\sigma$. - -Classical PCA is the specific case of probabilistic PCA when the covariance of the noise becomes infinitesimally small, i.e. $\sigma^2 \to 0$. -Probabilistic PCA generalizes classical PCA, this can be seen by marginalizing out the the latent variable.[^2] - -## The gene expression example - -In the first example, we illustrate: - - - how to specify the probabilistic model and - - how to perform inference on $\mathbf{W}$, $\boldsymbol{\mu}$ and $\sigma$ using MCMC. - -We use simulated gemnome data to demonstrate these. -The simulation is inspired by biological measurement of expression of genes in cells, and each cell is characterized by different gene features. -While the human genome is (mostly) identical between all the cells in the body, there exist interesting differences in gene expression in different human tissues and disease conditions. -One way to investigate certain diseases is to look at differences in gene expression in cells from patients and healthy controls (usually from the same tissue). - -Usually, we can assume that the changes in gene expression only affect a subset of all genes (and these can be linked to diseases in some way). -One of the challenges for this kind of data is to explore the underlying structure, e.g. to make the connection between a certain state (healthy/disease) and gene expression. -This becomes difficult when the dimensions is very large (up to 20000 genes across 1000s of cells). So in order to find structure in this data, it is useful to project the data into a lower dimensional space. - -Regardless of the biological background, the more abstract problem formulation is to project the data living in high-dimensional space onto a representation in lower-dimensional space where most of the variation is concentrated in the first few dimensions. -We use PCA to explore underlying structure or pattern which may not necessarily be obvious from looking at the raw data itself. - -#### Step 1: configuration of dependencies - -First, we load the dependencies used. - -```{julia} -using Turing -using ReverseDiff -Turing.setadbackend(:reversediff) -using LinearAlgebra, FillArrays - -# Packages for visualization -using DataFrames, StatsPlots, Measures - -# Set a seed for reproducibility. -using Random -Random.seed!(1789); -``` - -All packages used in this tutorial are listed here. -You can install them via `using Pkg; Pkg.add("package_name")`. - -Package usages: - -> We use `DataFrames` for instantiating matrices, `LinearAlgebra` and `FillArrays` to perform matrix operations; -> `Turing` for model specification and MCMC sampling, `ReverseDiff` for setting the automatic differentiation backend when sampling. -> `StatsPlots` for visualising the resutls. `, Measures` for setting plot margin units. -> As all examples involve sampling, for reproducibility we set a fixed seed using the `Random` standard library. - -#### Step 2: Data generation - -Here, we simulate the biological gene expression problem described earlier. -We simulate 60 cells, each cell has 9 gene features. -This is a simplified problem with only a few cells and genes for demonstration purpose, which is not comparable to the complexity in real-life (e.g. thousands of features for each individual). -Even so, spotting the structures or patterns in a 9-feature space would be a challenging task; it would be nice to reduce the dimentionality using p-PCA. - -By design, we mannually divide the 60 cells into two groups. the first 3 gene features of the first 30 cells have mean 10, while those of the last 30 cells have mean 10. -These two groups of cells differ in the expression of genes. - -```{julia} -n_genes = 9 # D -n_cells = 60 # N - -# create a diagonal block like expression matrix, with some non-informative genes; -# not all features/genes are informative, some might just not differ very much between cells) -mat_exp = randn(n_genes, n_cells) -mat_exp[1:(n_genes ÷ 3), 1:(n_cells ÷ 2)] .+= 10 -mat_exp[(2 * (n_genes ÷ 3) + 1):end, (n_cells ÷ 2 + 1):end] .+= 10 -``` - -To visualize the $(D=9) \times (N=60)$ data matrix `mat_exp`, we use the `heatmap` plot. - -```{julia} -heatmap( - mat_exp; - c=:summer, - colors=:value, - xlabel="cell number", - yflip=true, - ylabel="gene feature", - yticks=1:9, - colorbar_title="expression", -) -``` - -Note that: - - 1. We have made distinct feature differences between these two groups of cells (it is fairly obvious from looking at the raw data), in practice and with large enough data sets, it is often impossible to spot the differences from the raw data alone. - 2. If you have some patience and compute resources you can increase the size of the dataset, or play around with the noise levels to make the problem increasingly harder. - -#### Step 3: Create the pPCA model - -Here we construct the probabilistic model `pPCA()`. -As per the p-PCA formula, we think of each row (i.e. each gene feature) following a $N=60$ dimensional multivariate normal distribution centered around the corresponding row of $\mathbf{W}_{D \times k} \times \mathbf{Z}_{k \times N} + \boldsymbol{\mu}_{D \times N}$. - -```{julia} -@model function pPCA(X::AbstractMatrix{<:Real}, k::Int) - # retrieve the dimension of input matrix X. - N, D = size(X) - - # weights/loadings W - W ~ filldist(Normal(), D, k) - - # latent variable z - Z ~ filldist(Normal(), k, N) - - # mean offset - μ ~ MvNormal(Eye(D)) - genes_mean = W * Z .+ reshape(μ, n_genes, 1) - return X ~ arraydist([MvNormal(m, Eye(N)) for m in eachcol(genes_mean')]) -end; -``` - -The function `pPCA()` accepts: - - 1. an data array $\mathbf{X}$ (with no. of instances x dimension no. of features, NB: it is a transpose of the original data matrix); - 2. an integer $k$ which indicates the dimension of the latent space (the space the original feature matrix is projected onto). - -Specifically: - - 1. it first extracts the dimension $D$ and number of instances $N$ of the input matrix; - 2. draw samples of each entries of the projection matrix $\mathbf{W}$ from a standard normal; - 3. draw samples of the latent variable $\mathbf{Z}_{k \times N}$ from an MND; - 4. draw samples of the offset $\boldsymbol{\mu}$ from an MND, assuming uniform offset for all instances; - 5. Finally, we iterate through each gene dimension in $\mathbf{X}$, and define an MND for the sampling distribution (i.e. likelihood). - -#### Step 4: Sampling-based inference of the pPCA model - -Here we aim to perform MCMC sampling to infer the projection matrix $\mathbf{W}_{D \times k}$, the latent variable matrix $\mathbf{Z}_{k \times N}$, and the offsets $\boldsymbol{\mu}_{N \times 1}$. - -We run the inference using the NUTS sampler, of which the chain length is set to be 500, target accept ratio 0.65 and initial stepsize 0.1. By default, the NUTS sampler samples 1 chain. -You are free to try [different samplers](https://turinglang.org/stable/docs/library/#samplers). - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -k = 2 # k is the dimension of the projected space, i.e. the number of principal components/axes of choice -ppca = pPCA(mat_exp', k) # instantiate the probabilistic model -chain_ppca = sample(ppca, NUTS(), 500); -``` - -The samples are saved in the Chains struct `chain_ppca`, whose shape can be checked: - -```{julia} -size(chain_ppca) # (no. of iterations, no. of vars, no. of chains) = (500, 159, 1) -``` - -The Chains struct `chain_ppca` also contains the sampling info such as r-hat, ess, mean estimates, etc. -You can print it to check these quantities. - -#### Step 5: posterior predictive checks - -We try to reconstruct the input data using the posterior mean as parameter estimates. -We first retrieve the samples for the projection matrix `W` from `chain_ppca`. This can be done using the Julia `group(chain, parameter_name)` function. -Then we calculate the mean value for each element in $W$, averaging over the whole chain of samples. - -```{julia} -# Extract parameter estimates for predicting x - mean of posterior -W = reshape(mean(group(chain_ppca, :W))[:, 2], (n_genes, k)) -Z = reshape(mean(group(chain_ppca, :Z))[:, 2], (k, n_cells)) -μ = mean(group(chain_ppca, :μ))[:, 2] - -mat_rec = W * Z .+ repeat(μ; inner=(1, n_cells)) -``` - -```{julia} -heatmap( - mat_rec; - c=:summer, - colors=:value, - xlabel="cell number", - yflip=true, - ylabel="gene feature", - yticks=1:9, - colorbar_title="expression", -) -``` - -We can quantitatively check the absolute magnitudes of the column average of the gap between `mat_exp` and `mat_rec`: - -```{julia} -#| echo: false -# let -# diff_matrix = mat_exp .- mat_rec -# @assert abs(mean(diff_matrix[:, 4])) <= 0.5 #0.327 -# @assert abs(mean(diff_matrix[:, 5])) <= 0.5 #0.390 -# @assert abs(mean(diff_matrix[:, 6])) <= 0.5 #0.326 -# end -``` - -We observe that, using posterior mean, the recovered data matrix `mat_rec` has values align with the original data matrix - particularly the same pattern in the first and last 3 gene features are captured, which implies the inference and p-PCA decomposition are successful. -This is satisfying as we have just projected the original 9-dimensional space onto a 2-dimensional space - some info has been cut off in the projection process, but we haven't lost any important info, e.g. the key differences between the two groups. -The is the desirable property of PCA: it picks up the principal axes along which most of the (original) data variations cluster, and remove those less relevant. -If we choose the reduced space dimension $k$ to be exactly $D$ (the original data dimension), we would recover exactly the same original data matrix `mat_exp`, i.e. all information will be preserved. - -Now we have represented the original high-dimensional data in two dimensions, without lossing the key information about the two groups of cells in the input data. -Finally, the benefits of performing PCA is to analyse and visualise the dimension-reduced data in the projected, low-dimensional space. -we save the dimension-reduced matrix $\mathbf{Z}$ as a `DataFrame`, rename the columns and visualise the first two dimensions. - -```{julia} -df_pca = DataFrame(Z', :auto) -rename!(df_pca, Symbol.(["z" * string(i) for i in collect(1:k)])) -df_pca[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) - -scatter(df_pca[:, :z1], df_pca[:, :z2]; xlabel="z1", ylabel="z2", group=df_pca[:, :type]) -``` - -We see the two groups are well separated in this 2-D space. -As an unsupervised learning method, performing PCA on this dataset gives membership for each cell instance. -Another way to put it: 2 dimensions is enough to capture the main structure of the data. - -#### Further extension: automatic choice of the number of principal components with ARD - -A direct question arises from above practice is: how many principal components do we want to keep, in order to sufficiently represent the latent structure in the data? -This is a very central question for all latent factor models, i.e. how many dimensions are needed to represent that data in the latent space. -In the case of PCA, there exist a lot of heuristics to make that choice. -For example, We can tune the number of principal components using empirical methods such as cross-validation based some criteria such as MSE between the posterior predicted (e.g. mean predictions) data matrix and the original data matrix or the percentage of variation explained [3]. - -For p-PCA, this can be done in an elegant and principled way, using a technique called *Automatic Relevance Determination* (ARD). -ARD can help pick the correct number of principal directions by regularizing the solution space using a parameterized, data-dependent prior distribution that effectively prunes away redundant or superfluous features [4]. -Essentially, we are using a specific prior over the factor loadings $\mathbf{W}$ that allows us to prune away dimensions in the latent space. The prior is determined by a precision hyperparameter $\alpha$. Here, smaller values of $\alpha$ correspond to more important components. -You can find more details about this in e.g. [5]. - -```{julia} -@model function pPCA_ARD(X) - # Dimensionality of the problem. - N, D = size(X) - - # latent variable Z - Z ~ filldist(Normal(), D, N) - - # weights/loadings w with Automatic Relevance Determination part - α ~ filldist(Gamma(1.0, 1.0), D) - W ~ filldist(MvNormal(zeros(D), 1.0 ./ sqrt.(α)), D) - - mu = (W' * Z)' - - tau ~ Gamma(1.0, 1.0) - return X ~ arraydist([MvNormal(m, 1.0 / sqrt(tau)) for m in eachcol(mu)]) -end; -``` - -Instead of drawing samples of each entry in $\mathbf{W}$ from a standard normal, this time we repeatedly draw $D$ samples from the $D$-dimensional MND, forming a $D \times D$ matrix $\mathbf{W}$. -This matrix is a function of $\alpha$ as the samples are drawn from the MND parameterized by $\alpha$. -We also introduce a hyper-parameter $\tau$ which is the precision in the sampling distribution. -We also re-paramterise the sampling distribution, i.e. each dimension across all instances is a 60-dimensional multivariate normal distribution. Re-parameterisation can sometimes accelrate the sampling process. - -We instantiate the model and ask Turing to sample from it using NUTS sampler. The sample trajectories of $\alpha$ is plotted using the `plot` function from the package `StatsPlots`. - -```{julia} -ppca_ARD = pPCA_ARD(mat_exp') # instantiate the probabilistic model -chain_ppcaARD = sample(ppca_ARD, NUTS(), 500) # sampling -plot(group(chain_ppcaARD, :α); margin=6.0mm) -``` - -Again, we do some inference diagnostics. -Here we look at the convergence of the chains for the $α$ parameter. -This parameter determines the relevance of individual components. -We see that the chains have converged and the posterior of the $\alpha$ parameters is centered around much smaller values in two instances. -In the following, we will use the mean of the small values to select the *relevant* dimensions (remember that, smaller values of $\alpha$ correspond to more important components.). -We can clearly see from the values of $\alpha$ that there should be two dimensions (corresponding to $\bar{\alpha}_3=\bar{\alpha}_5≈0.05$) for this dataset. - -```{julia} -# Extract parameter mean estimates of the posterior -W = permutedims(reshape(mean(group(chain_ppcaARD, :W))[:, 2], (n_genes, n_genes))) -Z = permutedims(reshape(mean(group(chain_ppcaARD, :Z))[:, 2], (n_genes, n_cells)))' -α = mean(group(chain_ppcaARD, :α))[:, 2] -plot(α; label="α") -``` - -We can inspect `α` to see which elements are small (i.e. high relevance). -To do this, we first sort `α` using `sortperm()` (in ascending order by default), and record the indices of the first two smallest values (among the $D=9$ $\alpha$ values). -After picking the desired principal directions, we extract the corresponding subset loading vectors from $\mathbf{W}$, and the corresponding dimensions of $\mathbf{Z}$. -We obtain a posterior predicted matrix $\mathbf{X} \in \mathbb{R}^{2 \times 60}$ as the product of the two sub-matrices, and compare the recovered info with the original matrix. - -```{julia} -α_indices = sortperm(α)[1:2] -k = size(α_indices)[1] -X_rec = W[:, α_indices] * Z[α_indices, :] - -df_rec = DataFrame(X_rec', :auto) -heatmap( - X_rec; - c=:summer, - colors=:value, - xlabel="cell number", - yflip=true, - ylabel="gene feature", - yticks=1:9, - colorbar_title="expression", -) -``` - -We observe that, the data in the original space is recovered with key information, the distinct feature values in the first and last three genes for the two cell groups, are preserved. -We can also examine the data in the dimension-reduced space, i.e. the selected components (rows) in $\mathbf{Z}$. - -```{julia} -df_pro = DataFrame(Z[α_indices, :]', :auto) -rename!(df_pro, Symbol.(["z" * string(i) for i in collect(1:k)])) -df_pro[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) -scatter( - df_pro[:, 1], df_pro[:, 2]; xlabel="z1", ylabel="z2", color=df_pro[:, "type"], label="" -) -``` - -This plot is very similar to the low-dimensional plot above, with the *relevant* dimensions chosen based on the values of $α$ via ARD. -When you are in doubt about the number of dimensions to project onto, ARD might provide an answer to that question. - -## Final comments. - -p-PCA is a linear map which linearly transforms the data between the original and projected spaces. -It can also thought as a matrix factorisation method, in which $\mathbf{X}=(\mathbf{W} \times \mathbf{Z})^T$. The projection matrix can be understood as a new basis in the projected space, and $\mathbf{Z}$ are the new coordinates. - - -[^1]: Gilbert Strang, *Introduction to Linear Algebra*, 5th Ed., Wellesley-Cambridge Press, 2016. -[^2]: Probabilistic PCA by TensorFlow, "https://www.tensorflow.org/probability/examples/Probabilistic_PCA". -[^3]: Gareth M. James, Daniela Witten, Trevor Hastie, Robert Tibshirani, *An Introduction to Statistical Learning*, Springer, 2013. -[^4]: David Wipf, Srikantan Nagarajan, *A New View of Automatic Relevance Determination*, NIPS 2007. +--- +title: Probabilistic Principal Component Analysis (p-PCA) +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +## Overview of PCA + +Principal component analysis (PCA) is a fundamental technique to analyse and visualise data. +It is an unsupervised learning method mainly used for dimensionality reduction. + +For example, we have a data matrix $\mathbf{X} \in \mathbb{R}^{N \times D}$, and we would like to extract $k \ll D$ principal components which captures most of the information from the original matrix. +The goal is to understand $\mathbf{X}$ through a lower dimensional subspace (e.g. two-dimensional subspace for visualisation convenience) spanned by the principal components. + +In order to project the original data matrix into low dimensions, we need to find the principal directions where most of the variations of $\mathbf{X}$ lie in. +Traditionally, this is implemented via [singular value decomposition (SVD)](https://en.wikipedia.org/wiki/Singular_value_decomposition) which provides a robust and accurate computational framework for decomposing matrix into products of rotation-scaling-rotation matrices, particularly for large datasets(see an illustration [here](https://intoli.com/blog/pca-and-svd/)): + +$$ +\mathbf{X}_{N \times D} = \mathbf{U}_{N \times r} \times \boldsymbol{\Sigma}_{r \times r} \times \mathbf{V}^T_{r \times D} +$$ + +where $\Sigma_{r \times r}$ contains only $r := \operatorname{rank} \mathbf{X} \leq \min\{N,D\}$ non-zero singular values of $\mathbf{X}$. +If we pad $\Sigma$ with zeros and add arbitrary orthonormal columns to $\mathbf{U}$ and $\mathbf{V}$, we obtain the more compact form:[^1] + +$$ +\mathbf{X}_{N \times D} = \mathbf{U}_{N \times N} \mathbf{\Sigma}_{N \times D} \mathbf{V}_{D \times D}^T +$$ + +where $\mathbf{U}$ and $\mathbf{V}$ are unitary matrices (i.e. with orthonormal columns). +Such a decomposition always exists for any matrix. +Columns of $\mathbf{V}$ are the principal directions/axes. +The percentage of variations explained can be calculated using the ratios of singular values.[^3] + +Here we take a probabilistic perspective. +For more details and a mathematical derivation, we recommend Bishop's textbook (Christopher M. Bishop, Pattern Recognition and Machine Learning, 2006). +The idea of proabilistic PCA is to find a latent variable $z$ that can be used to describe the hidden structure in a dataset.[^2] +Consider a data set $\mathbf{X}_{D \times N}=\{x_i\}$ with $i=1,2,...,N$ data points, where each data point $x_i$ is $D$-dimensional (i.e. $x_i \in \mathcal{R}^D$). +Note that, here we use the flipped version of the data matrix. We aim to represent the original $n$ dimensional vector using a lower dimensional a latent variable $z_i \in \mathcal{R}^k$. + +We first assume that each latent variable $z_i$ is normally distributed: + +$$ +z_i \sim \mathcal{N}(0, I) +$$ + +and the corresponding data point is generated via projection: + +$$ +x_i | z_i \sim \mathcal{N}(\mathbf{W} z_i + \boldsymbol{μ}, \sigma^2 \mathbf{I}) +$$ + +where the projection matrix $\mathbf{W}_{D \times k}$ accommodates the principal axes. +The above formula expresses $x_i$ as a linear combination of the basis columns in the projection matrix `W`, where the combination coefficients sit in `z_i` (they are the coordinats of `x_i` in the new $k$-dimensional space.). +We can also express the above formula in matrix form: $\mathbf{X}_{D \times N} \approx \mathbf{W}_{D \times k} \mathbf{Z}_{k \times N}$. +We are interested in inferring $\mathbf{W}$, $μ$ and $\sigma$. + +Classical PCA is the specific case of probabilistic PCA when the covariance of the noise becomes infinitesimally small, i.e. $\sigma^2 \to 0$. +Probabilistic PCA generalizes classical PCA, this can be seen by marginalizing out the the latent variable.[^2] + +## The gene expression example + +In the first example, we illustrate: + + - how to specify the probabilistic model and + - how to perform inference on $\mathbf{W}$, $\boldsymbol{\mu}$ and $\sigma$ using MCMC. + +We use simulated gemnome data to demonstrate these. +The simulation is inspired by biological measurement of expression of genes in cells, and each cell is characterized by different gene features. +While the human genome is (mostly) identical between all the cells in the body, there exist interesting differences in gene expression in different human tissues and disease conditions. +One way to investigate certain diseases is to look at differences in gene expression in cells from patients and healthy controls (usually from the same tissue). + +Usually, we can assume that the changes in gene expression only affect a subset of all genes (and these can be linked to diseases in some way). +One of the challenges for this kind of data is to explore the underlying structure, e.g. to make the connection between a certain state (healthy/disease) and gene expression. +This becomes difficult when the dimensions is very large (up to 20000 genes across 1000s of cells). So in order to find structure in this data, it is useful to project the data into a lower dimensional space. + +Regardless of the biological background, the more abstract problem formulation is to project the data living in high-dimensional space onto a representation in lower-dimensional space where most of the variation is concentrated in the first few dimensions. +We use PCA to explore underlying structure or pattern which may not necessarily be obvious from looking at the raw data itself. + +#### Step 1: configuration of dependencies + +First, we load the dependencies used. + +```{julia} +using Turing +using ReverseDiff +using LinearAlgebra, FillArrays + +# Packages for visualization +using DataFrames, StatsPlots, Measures + +# Set a seed for reproducibility. +using Random +Random.seed!(1789); +``` + +All packages used in this tutorial are listed here. +You can install them via `using Pkg; Pkg.add("package_name")`. + +Package usages: +::: {.callout-tip} +## hello + +We use `DataFrames` for instantiating matrices, `LinearAlgebra` and `FillArrays` to perform matrix operations; +`Turing` for model specification and MCMC sampling, `ReverseDiff` for setting the automatic differentiation backend when sampling. +`StatsPlots` for visualising the resutls. `, Measures` for setting plot margin units. +As all examples involve sampling, for reproducibility we set a fixed seed using the `Random` standard library. +::: + +#### Step 2: Data generation + +Here, we simulate the biological gene expression problem described earlier. +We simulate 60 cells, each cell has 9 gene features. +This is a simplified problem with only a few cells and genes for demonstration purpose, which is not comparable to the complexity in real-life (e.g. thousands of features for each individual). +Even so, spotting the structures or patterns in a 9-feature space would be a challenging task; it would be nice to reduce the dimentionality using p-PCA. + +By design, we mannually divide the 60 cells into two groups. the first 3 gene features of the first 30 cells have mean 10, while those of the last 30 cells have mean 10. +These two groups of cells differ in the expression of genes. + +```{julia} +n_genes = 9 # D +n_cells = 60 # N + +# create a diagonal block like expression matrix, with some non-informative genes; +# not all features/genes are informative, some might just not differ very much between cells) +mat_exp = randn(n_genes, n_cells) +mat_exp[1:(n_genes ÷ 3), 1:(n_cells ÷ 2)] .+= 10 +mat_exp[(2 * (n_genes ÷ 3) + 1):end, (n_cells ÷ 2 + 1):end] .+= 10 +``` + +To visualize the $(D=9) \times (N=60)$ data matrix `mat_exp`, we use the `heatmap` plot. + +```{julia} +heatmap( + mat_exp; + c=:summer, + colors=:value, + xlabel="cell number", + yflip=true, + ylabel="gene feature", + yticks=1:9, + colorbar_title="expression", +) +``` + +Note that: + + 1. We have made distinct feature differences between these two groups of cells (it is fairly obvious from looking at the raw data), in practice and with large enough data sets, it is often impossible to spot the differences from the raw data alone. + 2. If you have some patience and compute resources you can increase the size of the dataset, or play around with the noise levels to make the problem increasingly harder. + +#### Step 3: Create the pPCA model + +Here we construct the probabilistic model `pPCA()`. +As per the p-PCA formula, we think of each row (i.e. each gene feature) following a $N=60$ dimensional multivariate normal distribution centered around the corresponding row of $\mathbf{W}_{D \times k} \times \mathbf{Z}_{k \times N} + \boldsymbol{\mu}_{D \times N}$. + +```{julia} +@model function pPCA(X::AbstractMatrix{<:Real}, k::Int) + # retrieve the dimension of input matrix X. + N, D = size(X) + + # weights/loadings W + W ~ filldist(Normal(), D, k) + + # latent variable z + Z ~ filldist(Normal(), k, N) + + # mean offset + μ ~ MvNormal(Eye(D)) + genes_mean = W * Z .+ reshape(μ, n_genes, 1) + return X ~ arraydist([MvNormal(m, Eye(N)) for m in eachcol(genes_mean')]) +end; +``` + +The function `pPCA()` accepts: + + 1. an data array $\mathbf{X}$ (with no. of instances x dimension no. of features, NB: it is a transpose of the original data matrix); + 2. an integer $k$ which indicates the dimension of the latent space (the space the original feature matrix is projected onto). + +Specifically: + + 1. it first extracts the dimension $D$ and number of instances $N$ of the input matrix; + 2. draw samples of each entries of the projection matrix $\mathbf{W}$ from a standard normal; + 3. draw samples of the latent variable $\mathbf{Z}_{k \times N}$ from an MND; + 4. draw samples of the offset $\boldsymbol{\mu}$ from an MND, assuming uniform offset for all instances; + 5. Finally, we iterate through each gene dimension in $\mathbf{X}$, and define an MND for the sampling distribution (i.e. likelihood). + +#### Step 4: Sampling-based inference of the pPCA model + +Here we aim to perform MCMC sampling to infer the projection matrix $\mathbf{W}_{D \times k}$, the latent variable matrix $\mathbf{Z}_{k \times N}$, and the offsets $\boldsymbol{\mu}_{N \times 1}$. + +We run the inference using the NUTS sampler, of which the chain length is set to be 500, target accept ratio 0.65 and initial stepsize 0.1. By default, the NUTS sampler samples 1 chain. +You are free to try [different samplers](https://turinglang.org/stable/docs/library/#samplers). + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +k = 2 # k is the dimension of the projected space, i.e. the number of principal components/axes of choice +ppca = pPCA(mat_exp', k) # instantiate the probabilistic model +chain_ppca = sample(ppca, NUTS(;adtype=AutoReverseDiff()), 500); +``` + +The samples are saved in the Chains struct `chain_ppca`, whose shape can be checked: + +```{julia} +size(chain_ppca) # (no. of iterations, no. of vars, no. of chains) = (500, 159, 1) +``` + +The Chains struct `chain_ppca` also contains the sampling info such as r-hat, ess, mean estimates, etc. +You can print it to check these quantities. + +#### Step 5: posterior predictive checks + +We try to reconstruct the input data using the posterior mean as parameter estimates. +We first retrieve the samples for the projection matrix `W` from `chain_ppca`. This can be done using the Julia `group(chain, parameter_name)` function. +Then we calculate the mean value for each element in $W$, averaging over the whole chain of samples. + +```{julia} +# Extract parameter estimates for predicting x - mean of posterior +W = reshape(mean(group(chain_ppca, :W))[:, 2], (n_genes, k)) +Z = reshape(mean(group(chain_ppca, :Z))[:, 2], (k, n_cells)) +μ = mean(group(chain_ppca, :μ))[:, 2] + +mat_rec = W * Z .+ repeat(μ; inner=(1, n_cells)) +``` + +```{julia} +heatmap( + mat_rec; + c=:summer, + colors=:value, + xlabel="cell number", + yflip=true, + ylabel="gene feature", + yticks=1:9, + colorbar_title="expression", +) +``` + +We can quantitatively check the absolute magnitudes of the column average of the gap between `mat_exp` and `mat_rec`: + +```{julia} +#| echo: false +# let +# diff_matrix = mat_exp .- mat_rec +# @assert abs(mean(diff_matrix[:, 4])) <= 0.5 #0.327 +# @assert abs(mean(diff_matrix[:, 5])) <= 0.5 #0.390 +# @assert abs(mean(diff_matrix[:, 6])) <= 0.5 #0.326 +# end +``` + +We observe that, using posterior mean, the recovered data matrix `mat_rec` has values align with the original data matrix - particularly the same pattern in the first and last 3 gene features are captured, which implies the inference and p-PCA decomposition are successful. +This is satisfying as we have just projected the original 9-dimensional space onto a 2-dimensional space - some info has been cut off in the projection process, but we haven't lost any important info, e.g. the key differences between the two groups. +The is the desirable property of PCA: it picks up the principal axes along which most of the (original) data variations cluster, and remove those less relevant. +If we choose the reduced space dimension $k$ to be exactly $D$ (the original data dimension), we would recover exactly the same original data matrix `mat_exp`, i.e. all information will be preserved. + +Now we have represented the original high-dimensional data in two dimensions, without lossing the key information about the two groups of cells in the input data. +Finally, the benefits of performing PCA is to analyse and visualise the dimension-reduced data in the projected, low-dimensional space. +we save the dimension-reduced matrix $\mathbf{Z}$ as a `DataFrame`, rename the columns and visualise the first two dimensions. + +```{julia} +df_pca = DataFrame(Z', :auto) +rename!(df_pca, Symbol.(["z" * string(i) for i in collect(1:k)])) +df_pca[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) + +scatter(df_pca[:, :z1], df_pca[:, :z2]; xlabel="z1", ylabel="z2", group=df_pca[:, :type]) +``` + +We see the two groups are well separated in this 2-D space. +As an unsupervised learning method, performing PCA on this dataset gives membership for each cell instance. +Another way to put it: 2 dimensions is enough to capture the main structure of the data. + +#### Further extension: automatic choice of the number of principal components with ARD + +A direct question arises from above practice is: how many principal components do we want to keep, in order to sufficiently represent the latent structure in the data? +This is a very central question for all latent factor models, i.e. how many dimensions are needed to represent that data in the latent space. +In the case of PCA, there exist a lot of heuristics to make that choice. +For example, We can tune the number of principal components using empirical methods such as cross-validation based some criteria such as MSE between the posterior predicted (e.g. mean predictions) data matrix and the original data matrix or the percentage of variation explained [3]. + +For p-PCA, this can be done in an elegant and principled way, using a technique called *Automatic Relevance Determination* (ARD). +ARD can help pick the correct number of principal directions by regularizing the solution space using a parameterized, data-dependent prior distribution that effectively prunes away redundant or superfluous features [4]. +Essentially, we are using a specific prior over the factor loadings $\mathbf{W}$ that allows us to prune away dimensions in the latent space. The prior is determined by a precision hyperparameter $\alpha$. Here, smaller values of $\alpha$ correspond to more important components. +You can find more details about this in e.g. [5]. + +```{julia} +@model function pPCA_ARD(X) + # Dimensionality of the problem. + N, D = size(X) + + # latent variable Z + Z ~ filldist(Normal(), D, N) + + # weights/loadings w with Automatic Relevance Determination part + α ~ filldist(Gamma(1.0, 1.0), D) + W ~ filldist(MvNormal(zeros(D), 1.0 ./ sqrt.(α)), D) + + mu = (W' * Z)' + + tau ~ Gamma(1.0, 1.0) + return X ~ arraydist([MvNormal(m, 1.0 / sqrt(tau)) for m in eachcol(mu)]) +end; +``` + +Instead of drawing samples of each entry in $\mathbf{W}$ from a standard normal, this time we repeatedly draw $D$ samples from the $D$-dimensional MND, forming a $D \times D$ matrix $\mathbf{W}$. +This matrix is a function of $\alpha$ as the samples are drawn from the MND parameterized by $\alpha$. +We also introduce a hyper-parameter $\tau$ which is the precision in the sampling distribution. +We also re-paramterise the sampling distribution, i.e. each dimension across all instances is a 60-dimensional multivariate normal distribution. Re-parameterisation can sometimes accelrate the sampling process. + +We instantiate the model and ask Turing to sample from it using NUTS sampler. The sample trajectories of $\alpha$ is plotted using the `plot` function from the package `StatsPlots`. + +```{julia} +ppca_ARD = pPCA_ARD(mat_exp') # instantiate the probabilistic model +chain_ppcaARD = sample(ppca_ARD, NUTS(;adtype=AutoReverseDiff()), 500) # sampling +plot(group(chain_ppcaARD, :α); margin=6.0mm) +``` + +Again, we do some inference diagnostics. +Here we look at the convergence of the chains for the $α$ parameter. +This parameter determines the relevance of individual components. +We see that the chains have converged and the posterior of the $\alpha$ parameters is centered around much smaller values in two instances. +In the following, we will use the mean of the small values to select the *relevant* dimensions (remember that, smaller values of $\alpha$ correspond to more important components.). +We can clearly see from the values of $\alpha$ that there should be two dimensions (corresponding to $\bar{\alpha}_3=\bar{\alpha}_5≈0.05$) for this dataset. + +```{julia} +# Extract parameter mean estimates of the posterior +W = permutedims(reshape(mean(group(chain_ppcaARD, :W))[:, 2], (n_genes, n_genes))) +Z = permutedims(reshape(mean(group(chain_ppcaARD, :Z))[:, 2], (n_genes, n_cells)))' +α = mean(group(chain_ppcaARD, :α))[:, 2] +plot(α; label="α") +``` + +We can inspect `α` to see which elements are small (i.e. high relevance). +To do this, we first sort `α` using `sortperm()` (in ascending order by default), and record the indices of the first two smallest values (among the $D=9$ $\alpha$ values). +After picking the desired principal directions, we extract the corresponding subset loading vectors from $\mathbf{W}$, and the corresponding dimensions of $\mathbf{Z}$. +We obtain a posterior predicted matrix $\mathbf{X} \in \mathbb{R}^{2 \times 60}$ as the product of the two sub-matrices, and compare the recovered info with the original matrix. + +```{julia} +α_indices = sortperm(α)[1:2] +k = size(α_indices)[1] +X_rec = W[:, α_indices] * Z[α_indices, :] + +df_rec = DataFrame(X_rec', :auto) +heatmap( + X_rec; + c=:summer, + colors=:value, + xlabel="cell number", + yflip=true, + ylabel="gene feature", + yticks=1:9, + colorbar_title="expression", +) +``` + +We observe that, the data in the original space is recovered with key information, the distinct feature values in the first and last three genes for the two cell groups, are preserved. +We can also examine the data in the dimension-reduced space, i.e. the selected components (rows) in $\mathbf{Z}$. + +```{julia} +df_pro = DataFrame(Z[α_indices, :]', :auto) +rename!(df_pro, Symbol.(["z" * string(i) for i in collect(1:k)])) +df_pro[!, :type] = repeat([1, 2]; inner=n_cells ÷ 2) +scatter( + df_pro[:, 1], df_pro[:, 2]; xlabel="z1", ylabel="z2", color=df_pro[:, "type"], label="" +) +``` + +This plot is very similar to the low-dimensional plot above, with the *relevant* dimensions chosen based on the values of $α$ via ARD. +When you are in doubt about the number of dimensions to project onto, ARD might provide an answer to that question. + +## Final comments. + +p-PCA is a linear map which linearly transforms the data between the original and projected spaces. +It can also thought as a matrix factorisation method, in which $\mathbf{X}=(\mathbf{W} \times \mathbf{Z})^T$. The projection matrix can be understood as a new basis in the projected space, and $\mathbf{Z}$ are the new coordinates. + + +[^1]: Gilbert Strang, *Introduction to Linear Algebra*, 5th Ed., Wellesley-Cambridge Press, 2016. +[^2]: Probabilistic PCA by TensorFlow, "https://www.tensorflow.org/probability/examples/Probabilistic_PCA". +[^3]: Gareth M. James, Daniela Witten, Trevor Hastie, Robert Tibshirani, *An Introduction to Statistical Learning*, Springer, 2013. +[^4]: David Wipf, Srikantan Nagarajan, *A New View of Automatic Relevance Determination*, NIPS 2007. [^5]: Christopher Bishop, *Pattern Recognition and Machine Learning*, Springer, 2006. \ No newline at end of file diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/12-gplvm/Project.toml b/tutorials/12-gplvm/Project.toml old mode 100644 new mode 100755 index 100582955..56443e0e9 --- a/tutorials/12-gplvm/Project.toml +++ b/tutorials/12-gplvm/Project.toml @@ -1,11 +1,11 @@ -[deps] -AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/12-gplvm/index.qmd b/tutorials/12-gplvm/index.qmd old mode 100644 new mode 100755 index c8740664d..9ad1a7d02 --- a/tutorials/12-gplvm/index.qmd +++ b/tutorials/12-gplvm/index.qmd @@ -1,226 +1,233 @@ ---- -title: Gaussian Process Latent Variable Model -engine: julia ---- - -In a previous tutorial, we have discussed latent variable models, in particular probabilistic principal component analysis (pPCA). -Here, we show how we can extend the mapping provided by pPCA to non-linear mappings between input and output. -For more details about the Gaussian Process Latent Variable Model (GPLVM), -we refer the reader to the [original publication](https://jmlr.org/papers/v6/lawrence05a.html) and a [further extension](http://proceedings.mlr.press/v9/titsias10a/titsias10a.pdf). - -In short, the GPVLM is a dimensionality reduction technique that allows us to embed a high-dimensional dataset in a lower-dimensional embedding. -Importantly, it provides the advantage that the linear mappings from the embedded space can be non-linearised through the use of Gaussian Processes. - -### Let's start by loading some dependencies. - -```{julia} -#| eval: false -using Turing -using AbstractGPs -using FillArrays -using LaTeXStrings -using Plots -using RDatasets -using ReverseDiff -using StatsBase - -using LinearAlgebra -using Random - -Random.seed!(1789); -``` - -We demonstrate the GPLVM with a very small dataset: [Fisher's Iris data set](https://en.wikipedia.org/wiki/Iris_flower_data_set). -This is mostly for reasons of run time, so the tutorial can be run quickly. -As you will see, one of the major drawbacks of using GPs is their speed, -although this is an active area of research. -We will briefly touch on some ways to speed things up at the end of this tutorial. -We transform the original data with non-linear operations in order to demonstrate the power of GPs to work on non-linear relationships, while keeping the problem reasonably small. - -```{julia} -#| eval: false -data = dataset("datasets", "iris") -species = data[!, "Species"] -index = shuffle(1:150) -# we extract the four measured quantities, -# so the dimension of the data is only d=4 for this toy example -dat = Matrix(data[index, 1:4]) -labels = data[index, "Species"] - -# non-linearize data to demonstrate ability of GPs to deal with non-linearity -dat[:, 1] = 0.5 * dat[:, 1] .^ 2 + 0.1 * dat[:, 1] .^ 3 -dat[:, 2] = dat[:, 2] .^ 3 + 0.2 * dat[:, 2] .^ 4 -dat[:, 3] = 0.1 * exp.(dat[:, 3]) - 0.2 * dat[:, 3] .^ 2 -dat[:, 4] = 0.5 * log.(dat[:, 4]) .^ 2 + 0.01 * dat[:, 3] .^ 5 - -# normalize data -dt = fit(ZScoreTransform, dat; dims=1); -StatsBase.transform!(dt, dat); -``` - -We will start out by demonstrating the basic similarity between pPCA (see the tutorial on this topic) and the GPLVM model. -Indeed, pPCA is basically equivalent to running the GPLVM model with an automatic relevance determination (ARD) linear kernel. - -First, we re-introduce the pPCA model (see the tutorial on pPCA for details) - -```{julia} -#| eval: false -@model function pPCA(x) - # Dimensionality of the problem. - N, D = size(x) - # latent variable z - z ~ filldist(Normal(), D, N) - # weights/loadings W - w ~ filldist(Normal(), D, D) - mu = (w * z)' - for d in 1:D - x[:, d] ~ MvNormal(mu[:, d], I) - end - return nothing -end; -``` - -We define two different kernels, a simple linear kernel with an Automatic Relevance Determination transform and a -squared exponential kernel. - -```{julia} -#| eval: false -linear_kernel(α) = LinearKernel() ∘ ARDTransform(α) -sekernel(α, σ) = σ * SqExponentialKernel() ∘ ARDTransform(α); -``` - -And here is the GPLVM model. -We create separate models for the two types of kernel. - -```{julia} -#| eval: false -@model function GPLVM_linear(Y, K) - # Dimensionality of the problem. - N, D = size(Y) - # K is the dimension of the latent space - @assert K <= D - noise = 1e-3 - - # Priors - α ~ MvLogNormal(MvNormal(Zeros(K), I)) - Z ~ filldist(Normal(), K, N) - mu ~ filldist(Normal(), N) - - gp = GP(linear_kernel(α)) - gpz = gp(ColVecs(Z), noise) - Y ~ filldist(MvNormal(mu, cov(gpz)), D) - - return nothing -end; - -@model function GPLVM(Y, K) - # Dimensionality of the problem. - N, D = size(Y) - # K is the dimension of the latent space - @assert K <= D - noise = 1e-3 - - # Priors - α ~ MvLogNormal(MvNormal(Zeros(K), I)) - σ ~ LogNormal(0.0, 1.0) - Z ~ filldist(Normal(), K, N) - mu ~ filldist(Normal(), N) - - gp = GP(sekernel(α, σ)) - gpz = gp(ColVecs(Z), noise) - Y ~ filldist(MvNormal(mu, cov(gpz)), D) - - return nothing -end; -``` - -```{julia} -#| eval: false -# Standard GPs don't scale very well in n, so we use a small subsample for the purpose of this tutorial -n_data = 40 -# number of features to use from dataset -n_features = 4 -# latent dimension for GP case -ndim = 4; -``` - -```{julia} -#| eval: false -ppca = pPCA(dat[1:n_data, 1:n_features]) -chain_ppca = sample(ppca, NUTS{Turing.ReverseDiffAD{true}}(), 1000); -``` - -```{julia} -#| eval: false -# we extract the posterior mean estimates of the parameters from the chain -z_mean = reshape(mean(group(chain_ppca, :z))[:, 2], (n_features, n_data)) -scatter(z_mean[1, :], z_mean[2, :]; group=labels[1:n_data], xlabel=L"z_1", ylabel=L"z_2") -``` - -We can see that the pPCA fails to distinguish the groups. -In particular, the `setosa` species is not clearly separated from `versicolor` and `virginica`. -This is due to the non-linearities that we introduced, as without them the two groups can be clearly distinguished -using pPCA (see the pPCA tutorial). - -Let's try the same with our linear kernel GPLVM model. - -```{julia} -#| eval: false -gplvm_linear = GPLVM_linear(dat[1:n_data, 1:n_features], ndim) -chain_linear = sample(gplvm_linear, NUTS{Turing.ReverseDiffAD{true}}(), 500); -``` - -```{julia} -#| eval: false -# we extract the posterior mean estimates of the parameters from the chain -z_mean = reshape(mean(group(chain_linear, :Z))[:, 2], (n_features, n_data)) -alpha_mean = mean(group(chain_linear, :α))[:, 2] - -alpha1, alpha2 = partialsortperm(alpha_mean, 1:2; rev=true) -scatter( - z_mean[alpha1, :], - z_mean[alpha2, :]; - group=labels[1:n_data], - xlabel=L"z_{\mathrm{ard}_1}", - ylabel=L"z_{\mathrm{ard}_2}", -) -``` - -We can see that similar to the pPCA case, the linear kernel GPLVM fails to distinguish between the two groups -(`setosa` on the one hand, and `virginica` and `verticolor` on the other). - -Finally, we demonstrate that by changing the kernel to a non-linear function, we are able to separate the data again. - -```{julia} -#| eval: false -gplvm = GPLVM(dat[1:n_data, 1:n_features], ndim) -chain_gplvm = sample(gplvm, NUTS{Turing.ReverseDiffAD{true}}(), 500); -``` - -```{julia} -#| eval: false -# we extract the posterior mean estimates of the parameters from the chain -z_mean = reshape(mean(group(chain_gplvm, :Z))[:, 2], (ndim, n_data)) -alpha_mean = mean(group(chain_gplvm, :α))[:, 2] - -alpha1, alpha2 = partialsortperm(alpha_mean, 1:2; rev=true) -scatter( - z_mean[alpha1, :], - z_mean[alpha2, :]; - group=labels[1:n_data], - xlabel=L"z_{\mathrm{ard}_1}", - ylabel=L"z_{\mathrm{ard}_2}", -) -``` - -```{julia} -#| eval: false -let - @assert abs( - mean(z_mean[alpha1, labels[1:n_data] .== "setosa"]) - - mean(z_mean[alpha1, labels[1:n_data] .!= "setosa"]), - ) > 1 -end -``` - +--- +title: Gaussian Process Latent Variable Model +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In a previous tutorial, we have discussed latent variable models, in particular probabilistic principal component analysis (pPCA). +Here, we show how we can extend the mapping provided by pPCA to non-linear mappings between input and output. +For more details about the Gaussian Process Latent Variable Model (GPLVM), +we refer the reader to the [original publication](https://jmlr.org/papers/v6/lawrence05a.html) and a [further extension](http://proceedings.mlr.press/v9/titsias10a/titsias10a.pdf). + +In short, the GPVLM is a dimensionality reduction technique that allows us to embed a high-dimensional dataset in a lower-dimensional embedding. +Importantly, it provides the advantage that the linear mappings from the embedded space can be non-linearised through the use of Gaussian Processes. + +### Let's start by loading some dependencies. + +```{julia} +#| eval: false +using Turing +using AbstractGPs +using FillArrays +using LaTeXStrings +using Plots +using RDatasets +using ReverseDiff +using StatsBase + +using LinearAlgebra +using Random + +Random.seed!(1789); +``` + +We demonstrate the GPLVM with a very small dataset: [Fisher's Iris data set](https://en.wikipedia.org/wiki/Iris_flower_data_set). +This is mostly for reasons of run time, so the tutorial can be run quickly. +As you will see, one of the major drawbacks of using GPs is their speed, +although this is an active area of research. +We will briefly touch on some ways to speed things up at the end of this tutorial. +We transform the original data with non-linear operations in order to demonstrate the power of GPs to work on non-linear relationships, while keeping the problem reasonably small. + +```{julia} +#| eval: false +data = dataset("datasets", "iris") +species = data[!, "Species"] +index = shuffle(1:150) +# we extract the four measured quantities, +# so the dimension of the data is only d=4 for this toy example +dat = Matrix(data[index, 1:4]) +labels = data[index, "Species"] + +# non-linearize data to demonstrate ability of GPs to deal with non-linearity +dat[:, 1] = 0.5 * dat[:, 1] .^ 2 + 0.1 * dat[:, 1] .^ 3 +dat[:, 2] = dat[:, 2] .^ 3 + 0.2 * dat[:, 2] .^ 4 +dat[:, 3] = 0.1 * exp.(dat[:, 3]) - 0.2 * dat[:, 3] .^ 2 +dat[:, 4] = 0.5 * log.(dat[:, 4]) .^ 2 + 0.01 * dat[:, 3] .^ 5 + +# normalize data +dt = fit(ZScoreTransform, dat; dims=1); +StatsBase.transform!(dt, dat); +``` + +We will start out by demonstrating the basic similarity between pPCA (see the tutorial on this topic) and the GPLVM model. +Indeed, pPCA is basically equivalent to running the GPLVM model with an automatic relevance determination (ARD) linear kernel. + +First, we re-introduce the pPCA model (see the tutorial on pPCA for details) + +```{julia} +#| eval: false +@model function pPCA(x) + # Dimensionality of the problem. + N, D = size(x) + # latent variable z + z ~ filldist(Normal(), D, N) + # weights/loadings W + w ~ filldist(Normal(), D, D) + mu = (w * z)' + for d in 1:D + x[:, d] ~ MvNormal(mu[:, d], I) + end + return nothing +end; +``` + +We define two different kernels, a simple linear kernel with an Automatic Relevance Determination transform and a +squared exponential kernel. + +```{julia} +#| eval: false +linear_kernel(α) = LinearKernel() ∘ ARDTransform(α) +sekernel(α, σ) = σ * SqExponentialKernel() ∘ ARDTransform(α); +``` + +And here is the GPLVM model. +We create separate models for the two types of kernel. + +```{julia} +#| eval: false +@model function GPLVM_linear(Y, K) + # Dimensionality of the problem. + N, D = size(Y) + # K is the dimension of the latent space + @assert K <= D + noise = 1e-3 + + # Priors + α ~ MvLogNormal(MvNormal(Zeros(K), I)) + Z ~ filldist(Normal(), K, N) + mu ~ filldist(Normal(), N) + + gp = GP(linear_kernel(α)) + gpz = gp(ColVecs(Z), noise) + Y ~ filldist(MvNormal(mu, cov(gpz)), D) + + return nothing +end; + +@model function GPLVM(Y, K) + # Dimensionality of the problem. + N, D = size(Y) + # K is the dimension of the latent space + @assert K <= D + noise = 1e-3 + + # Priors + α ~ MvLogNormal(MvNormal(Zeros(K), I)) + σ ~ LogNormal(0.0, 1.0) + Z ~ filldist(Normal(), K, N) + mu ~ filldist(Normal(), N) + + gp = GP(sekernel(α, σ)) + gpz = gp(ColVecs(Z), noise) + Y ~ filldist(MvNormal(mu, cov(gpz)), D) + + return nothing +end; +``` + +```{julia} +#| eval: false +# Standard GPs don't scale very well in n, so we use a small subsample for the purpose of this tutorial +n_data = 40 +# number of features to use from dataset +n_features = 4 +# latent dimension for GP case +ndim = 4; +``` + +```{julia} +#| eval: false +ppca = pPCA(dat[1:n_data, 1:n_features]) +chain_ppca = sample(ppca, NUTS{Turing.ReverseDiffAD{true}}(), 1000); +``` + +```{julia} +#| eval: false +# we extract the posterior mean estimates of the parameters from the chain +z_mean = reshape(mean(group(chain_ppca, :z))[:, 2], (n_features, n_data)) +scatter(z_mean[1, :], z_mean[2, :]; group=labels[1:n_data], xlabel=L"z_1", ylabel=L"z_2") +``` + +We can see that the pPCA fails to distinguish the groups. +In particular, the `setosa` species is not clearly separated from `versicolor` and `virginica`. +This is due to the non-linearities that we introduced, as without them the two groups can be clearly distinguished +using pPCA (see the pPCA tutorial). + +Let's try the same with our linear kernel GPLVM model. + +```{julia} +#| eval: false +gplvm_linear = GPLVM_linear(dat[1:n_data, 1:n_features], ndim) +chain_linear = sample(gplvm_linear, NUTS{Turing.ReverseDiffAD{true}}(), 500); +``` + +```{julia} +#| eval: false +# we extract the posterior mean estimates of the parameters from the chain +z_mean = reshape(mean(group(chain_linear, :Z))[:, 2], (n_features, n_data)) +alpha_mean = mean(group(chain_linear, :α))[:, 2] + +alpha1, alpha2 = partialsortperm(alpha_mean, 1:2; rev=true) +scatter( + z_mean[alpha1, :], + z_mean[alpha2, :]; + group=labels[1:n_data], + xlabel=L"z_{\mathrm{ard}_1}", + ylabel=L"z_{\mathrm{ard}_2}", +) +``` + +We can see that similar to the pPCA case, the linear kernel GPLVM fails to distinguish between the two groups +(`setosa` on the one hand, and `virginica` and `verticolor` on the other). + +Finally, we demonstrate that by changing the kernel to a non-linear function, we are able to separate the data again. + +```{julia} +#| eval: false +gplvm = GPLVM(dat[1:n_data, 1:n_features], ndim) +chain_gplvm = sample(gplvm, NUTS{Turing.ReverseDiffAD{true}}(), 500); +``` + +```{julia} +#| eval: false +# we extract the posterior mean estimates of the parameters from the chain +z_mean = reshape(mean(group(chain_gplvm, :Z))[:, 2], (ndim, n_data)) +alpha_mean = mean(group(chain_gplvm, :α))[:, 2] + +alpha1, alpha2 = partialsortperm(alpha_mean, 1:2; rev=true) +scatter( + z_mean[alpha1, :], + z_mean[alpha2, :]; + group=labels[1:n_data], + xlabel=L"z_{\mathrm{ard}_1}", + ylabel=L"z_{\mathrm{ard}_2}", +) +``` + +```{julia} +#| eval: false +let + @assert abs( + mean(z_mean[alpha1, labels[1:n_data] .== "setosa"]) - + mean(z_mean[alpha1, labels[1:n_data] .!= "setosa"]), + ) > 1 +end +``` + Now, the split between the two groups is visible again. \ No newline at end of file diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/13-seasonal-time-series/Project.toml b/tutorials/13-seasonal-time-series/Project.toml old mode 100644 new mode 100755 index 332677a55..48cc4e418 --- a/tutorials/13-seasonal-time-series/Project.toml +++ b/tutorials/13-seasonal-time-series/Project.toml @@ -1,7 +1,7 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/13-seasonal-time-series/index.qmd b/tutorials/13-seasonal-time-series/index.qmd old mode 100644 new mode 100755 index 77eeb1b8e..079510eac --- a/tutorials/13-seasonal-time-series/index.qmd +++ b/tutorials/13-seasonal-time-series/index.qmd @@ -1,341 +1,348 @@ ---- -title: Bayesian Time Series Analysis -engine: julia ---- - -In time series analysis we are often interested in understanding how various real-life circumstances impact our quantity of interest. -These can be, for instance, season, day of week, or time of day. -To analyse this it is useful to decompose time series into simpler components (corresponding to relevant circumstances) -and infer their relevance. -In this tutorial we are going to use Turing for time series analysis and learn about useful ways to decompose time series. - -# Modelling time series - -Before we start coding, let us talk about what exactly we mean with time series decomposition. -In a nutshell, it is a divide-and-conquer approach where we express a time series as a sum or a product of simpler series. -For instance, the time series $f(t)$ can be decomposed into a sum of $n$ components - -$$f(t) = \sum_{i=1}^n f_i(t),$$ - -or we can decompose $g(t)$ into a product of $m$ components - -$$g(t) = \prod_{i=1}^m g_i(t).$$ - -We refer to this as *additive* or *multiplicative* decomposition respectively. -This type of decomposition is great since it lets us reason about individual components, which makes encoding prior information and interpreting model predictions very easy. -Two common components are *trends*, which represent the overall change of the time series (often assumed to be linear), -and *cyclic effects* which contribute oscillating effects around the trend. -Let us simulate some data with an additive linear trend and oscillating effects. - -```{julia} -using Turing -using FillArrays -using StatsPlots - -using LinearAlgebra -using Random -using Statistics - -Random.seed!(12345) - -true_sin_freq = 2 -true_sin_amp = 5 -true_cos_freq = 7 -true_cos_amp = 2.5 -tmax = 10 -β_true = 2 -α_true = -1 -tt = 0:0.05:tmax -f₁(t) = α_true + β_true * t -f₂(t) = true_sin_amp * sinpi(2 * t * true_sin_freq / tmax) -f₃(t) = true_cos_amp * cospi(2 * t * true_cos_freq / tmax) -f(t) = f₁(t) + f₂(t) + f₃(t) - -plot(f, tt; label="f(t)", title="Observed time series", legend=:topleft, linewidth=3) -plot!( - [f₁, f₂, f₃], - tt; - label=["f₁(t)" "f₂(t)" "f₃(t)"], - style=[:dot :dash :dashdot], - linewidth=1, -) -``` - -Even though we use simple components, combining them can give rise to fairly complex time series. -In this time series, cyclic effects are just added on top of the trend. -If we instead multiply the components the cyclic effects cause the series to oscillate -between larger and larger values, since they get scaled by the trend. - -```{julia} -g(t) = f₁(t) * f₂(t) * f₃(t) - -plot(g, tt; label="f(t)", title="Observed time series", legend=:topleft, linewidth=3) -plot!([f₁, f₂, f₃], tt; label=["f₁(t)" "f₂(t)" "f₃(t)"], linewidth=1) -``` - -Unlike $f$, $g$ oscillates around $0$ since it is being multiplied with sines and cosines. -To let a multiplicative decomposition oscillate around the trend we could define it as -$\tilde{g}(t) = f₁(t) * (1 + f₂(t)) * (1 + f₃(t)),$ -but for convenience we will leave it as is. -The inference machinery is the same for both cases. - -# Model fitting - -Having discussed time series decomposition, let us fit a model to the time series above and recover the true parameters. -Before building our model, we standardise the time axis to $[0, 1]$ and subtract the max of the time series. -This helps convergence while maintaining interpretability and the correct scales for the cyclic components. - -```{julia} -σ_true = 0.35 -t = collect(tt[begin:3:end]) -t_min, t_max = extrema(t) -x = (t .- t_min) ./ (t_max - t_min) -yf = f.(t) .+ σ_true .* randn(size(t)) -yf_max = maximum(yf) -yf = yf .- yf_max - -scatter(x, yf; title="Standardised data", legend=false) -``` - -Let us now build our model. -We want to assume a linear trend, and cyclic effects. -Encoding a linear trend is easy enough, but what about cyclical effects? -We will take a scattergun approach, and create multiple cyclical features using both sine and cosine functions and let our inference machinery figure out which to keep. -To do this, we define how long a one period should be, and create features in reference to said period. -How long a period should be is problem dependent, but as an example let us say it is $1$ year. -If we then find evidence for a cyclic effect with a frequency of 2, that would mean a biannual effect. A frequency of 4 would mean quarterly etc. -Since we are using synthetic data, we are simply going to let the period be 1, which is the entire length of the time series. - -```{julia} -freqs = 1:10 -num_freqs = length(freqs) -period = 1 -cyclic_features = [sinpi.(2 .* freqs' .* x ./ period) cospi.(2 .* freqs' .* x ./ period)] - -plot_freqs = [1, 3, 5] -freq_ptl = plot( - cyclic_features[:, plot_freqs]; - label=permutedims(["sin(2π$(f)x)" for f in plot_freqs]), - title="Cyclical features subset", -) -``` - -Having constructed the cyclical features, we can finally build our model. The model we will implement looks like this - -$$ -f(t) = \alpha + \beta_t t + \sum_{i=1}^F \beta_{\sin{},i} \sin{}(2\pi f_i t) + \sum_{i=1}^F \beta_{\cos{},i} \cos{}(2\pi f_i t), -$$ - -with a Gaussian likelihood $y \sim \mathcal{N}(f(t), \sigma^2)$. -For convenience we are treating the cyclical feature weights $\beta_{\sin{},i}$ and $\beta_{\cos{},i}$ the same in code and weight them with $\beta_c$. -And just because it is so easy, we parameterise our model with the operation with which to apply the cyclic effects. -This lets us use the exact same code for both additive and multiplicative models. -Finally, we plot prior predictive samples to make sure our priors make sense. - -```{julia} -@model function decomp_model(t, c, op) - α ~ Normal(0, 10) - βt ~ Normal(0, 2) - βc ~ MvNormal(Zeros(size(c, 2)), I) - σ ~ truncated(Normal(0, 0.1); lower=0) - - cyclic = c * βc - trend = α .+ βt .* t - μ = op(trend, cyclic) - y ~ MvNormal(μ, σ^2 * I) - return (; trend, cyclic) -end - -y_prior_samples = mapreduce(hcat, 1:100) do _ - rand(decomp_model(t, cyclic_features, +)).y -end -plot(t, y_prior_samples; linewidth=1, alpha=0.5, color=1, label="", title="Prior samples") -scatter!(t, yf; color=2, label="Data") -``` - -With the model specified and with a reasonable prior we can now let Turing decompose the time series for us! - -```{julia} -function mean_ribbon(samples) - qs = quantile(samples) - low = qs[:, Symbol("2.5%")] - up = qs[:, Symbol("97.5%")] - m = mean(samples)[:, :mean] - return m, (m - low, up - m) -end - -function get_decomposition(model, x, cyclic_features, chain, op) - chain_params = Turing.MCMCChains.get_sections(chain, :parameters) - return generated_quantities(model(x, cyclic_features, op), chain_params) -end - -function plot_fit(x, y, decomp, ymax) - trend = mapreduce(x -> x.trend, hcat, decomp) - cyclic = mapreduce(x -> x.cyclic, hcat, decomp) - - trend_plt = plot( - x, - trend .+ ymax; - color=1, - label=nothing, - alpha=0.2, - title="Trend", - xlabel="Time", - ylabel="f₁(t)", - ) - ls = [ones(length(t)) t] \ y - α̂, β̂ = ls[1], ls[2:end] - plot!( - trend_plt, - t, - α̂ .+ t .* β̂ .+ ymax; - label="Least squares trend", - color=5, - linewidth=4, - ) - - scatter!(trend_plt, x, y .+ ymax; label=nothing, color=2, legend=:topleft) - cyclic_plt = plot( - x, - cyclic; - color=1, - label=nothing, - alpha=0.2, - title="Cyclic effect", - xlabel="Time", - ylabel="f₂(t)", - ) - return trend_plt, cyclic_plt -end - -chain = sample(decomp_model(x, cyclic_features, +) | (; y=yf), NUTS(), 2000, progress=false) -yf_samples = predict(decomp_model(x, cyclic_features, +), chain) -m, conf = mean_ribbon(yf_samples) -predictive_plt = plot( - t, - m .+ yf_max; - ribbon=conf, - label="Posterior density", - title="Posterior decomposition", - xlabel="Time", - ylabel="f(t)", -) -scatter!(predictive_plt, t, yf .+ yf_max; color=2, label="Data", legend=:topleft) - -decomp = get_decomposition(decomp_model, x, cyclic_features, chain, +) -decomposed_plt = plot_fit(t, yf, decomp, yf_max) -plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) -``` - -```{julia} -#| echo: false -let - @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" - lower_quantile = m .- conf[1] # 2.5% quantile - upper_quantile = m .+ conf[2] # 97.5% quantile - @assert mean(lower_quantile .≤ yf .≤ upper_quantile) ≥ 0.9 "Surprisingly few observations in predicted 95% interval: $(mean(lower_quantile .≤ yf .≤ upper_quantile))" -end -``` - -Inference is successful and the posterior beautifully captures the data. -We see that the least squares linear fit deviates somewhat from the posterior trend. -Since our model takes cyclic effects into account separately, -we get a better estimate of the true overall trend than if we would have just fitted a line. -But what frequency content did the model identify? - - -```{julia} -function plot_cyclic_features(βsin, βcos) - labels = reshape(["freq = $i" for i in freqs], 1, :) - colors = collect(freqs)' - style = reshape([i <= 10 ? :solid : :dash for i in 1:length(labels)], 1, :) - sin_features_plt = density( - βsin[:, :, 1]; - title="Sine features posterior", - label=labels, - ylabel="Density", - xlabel="Weight", - color=colors, - linestyle=style, - legend=nothing, - ) - cos_features_plt = density( - βcos[:, :, 1]; - title="Cosine features posterior", - ylabel="Density", - xlabel="Weight", - label=nothing, - color=colors, - linestyle=style, - ) - - return seasonal_features_plt = plot( - sin_features_plt, - cos_features_plt; - layout=(2, 1), - size=(800, 600), - legend=:outerright, - ) -end - -βc = Array(group(chain, :βc)) -plot_cyclic_features(βc[:, begin:num_freqs, :], βc[:, (num_freqs + 1):end, :]) -``` - -Plotting the posterior over the cyclic features reveals that the model managed to extract the true frequency content. - -Since we wrote our model to accept a combining operator, we can easily run the same analysis for a multiplicative model. - -```{julia} -yg = g.(t) .+ σ_true .* randn(size(t)) - -y_prior_samples = mapreduce(hcat, 1:100) do _ - rand(decomp_model(t, cyclic_features, .*)).y -end -plot(t, y_prior_samples; linewidth=1, alpha=0.5, color=1, label="", title="Prior samples") -scatter!(t, yf; color=2, label="Data") -``` - -```{julia} -chain = sample(decomp_model(x, cyclic_features, .*) | (; y=yg), NUTS(), 2000, progress=false) -yg_samples = predict(decomp_model(x, cyclic_features, .*), chain) -m, conf = mean_ribbon(yg_samples) -predictive_plt = plot( - t, - m; - ribbon=conf, - label="Posterior density", - title="Posterior decomposition", - xlabel="Time", - ylabel="g(t)", -) -scatter!(predictive_plt, t, yg; color=2, label="Data", legend=:topleft) - -decomp = get_decomposition(decomp_model, x, cyclic_features, chain, .*) -decomposed_plt = plot_fit(t, yg, decomp, 0) -plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) -``` - -```{julia} -#| echo: false -let - @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" - lower_quantile = m .- conf[1] # 2.5% quantile - upper_quantile = m .+ conf[2] # 97.5% quantile - @assert mean(lower_quantile .≤ yg .≤ upper_quantile) ≥ 0.9 "Surprisingly few observations in predicted 95% interval: $(mean(lower_quantile .≤ yg .≤ upper_quantile))" -end -``` - -The model fits! What about the infered cyclic components? - -```{julia} -βc = Array(group(chain, :βc)) -plot_cyclic_features(βc[:, begin:num_freqs, :], βc[:, (num_freqs + 1):end, :]) -``` - -While multiplicative model fits to the data, it does not recover the true parameters for this dataset. - -# Wrapping up - -In this tutorial we have seen how to implement and fit time series models using additive and multiplicative decomposition. -We also saw how to visualise the model fit, and how to interpret learned cyclical components. +--- +title: Bayesian Time Series Analysis +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In time series analysis we are often interested in understanding how various real-life circumstances impact our quantity of interest. +These can be, for instance, season, day of week, or time of day. +To analyse this it is useful to decompose time series into simpler components (corresponding to relevant circumstances) +and infer their relevance. +In this tutorial we are going to use Turing for time series analysis and learn about useful ways to decompose time series. + +# Modelling time series + +Before we start coding, let us talk about what exactly we mean with time series decomposition. +In a nutshell, it is a divide-and-conquer approach where we express a time series as a sum or a product of simpler series. +For instance, the time series $f(t)$ can be decomposed into a sum of $n$ components + +$$f(t) = \sum_{i=1}^n f_i(t),$$ + +or we can decompose $g(t)$ into a product of $m$ components + +$$g(t) = \prod_{i=1}^m g_i(t).$$ + +We refer to this as *additive* or *multiplicative* decomposition respectively. +This type of decomposition is great since it lets us reason about individual components, which makes encoding prior information and interpreting model predictions very easy. +Two common components are *trends*, which represent the overall change of the time series (often assumed to be linear), +and *cyclic effects* which contribute oscillating effects around the trend. +Let us simulate some data with an additive linear trend and oscillating effects. + +```{julia} +using Turing +using FillArrays +using StatsPlots + +using LinearAlgebra +using Random +using Statistics + +Random.seed!(12345) + +true_sin_freq = 2 +true_sin_amp = 5 +true_cos_freq = 7 +true_cos_amp = 2.5 +tmax = 10 +β_true = 2 +α_true = -1 +tt = 0:0.05:tmax +f₁(t) = α_true + β_true * t +f₂(t) = true_sin_amp * sinpi(2 * t * true_sin_freq / tmax) +f₃(t) = true_cos_amp * cospi(2 * t * true_cos_freq / tmax) +f(t) = f₁(t) + f₂(t) + f₃(t) + +plot(f, tt; label="f(t)", title="Observed time series", legend=:topleft, linewidth=3) +plot!( + [f₁, f₂, f₃], + tt; + label=["f₁(t)" "f₂(t)" "f₃(t)"], + style=[:dot :dash :dashdot], + linewidth=1, +) +``` + +Even though we use simple components, combining them can give rise to fairly complex time series. +In this time series, cyclic effects are just added on top of the trend. +If we instead multiply the components the cyclic effects cause the series to oscillate +between larger and larger values, since they get scaled by the trend. + +```{julia} +g(t) = f₁(t) * f₂(t) * f₃(t) + +plot(g, tt; label="f(t)", title="Observed time series", legend=:topleft, linewidth=3) +plot!([f₁, f₂, f₃], tt; label=["f₁(t)" "f₂(t)" "f₃(t)"], linewidth=1) +``` + +Unlike $f$, $g$ oscillates around $0$ since it is being multiplied with sines and cosines. +To let a multiplicative decomposition oscillate around the trend we could define it as +$\tilde{g}(t) = f₁(t) * (1 + f₂(t)) * (1 + f₃(t)),$ +but for convenience we will leave it as is. +The inference machinery is the same for both cases. + +# Model fitting + +Having discussed time series decomposition, let us fit a model to the time series above and recover the true parameters. +Before building our model, we standardise the time axis to $[0, 1]$ and subtract the max of the time series. +This helps convergence while maintaining interpretability and the correct scales for the cyclic components. + +```{julia} +σ_true = 0.35 +t = collect(tt[begin:3:end]) +t_min, t_max = extrema(t) +x = (t .- t_min) ./ (t_max - t_min) +yf = f.(t) .+ σ_true .* randn(size(t)) +yf_max = maximum(yf) +yf = yf .- yf_max + +scatter(x, yf; title="Standardised data", legend=false) +``` + +Let us now build our model. +We want to assume a linear trend, and cyclic effects. +Encoding a linear trend is easy enough, but what about cyclical effects? +We will take a scattergun approach, and create multiple cyclical features using both sine and cosine functions and let our inference machinery figure out which to keep. +To do this, we define how long a one period should be, and create features in reference to said period. +How long a period should be is problem dependent, but as an example let us say it is $1$ year. +If we then find evidence for a cyclic effect with a frequency of 2, that would mean a biannual effect. A frequency of 4 would mean quarterly etc. +Since we are using synthetic data, we are simply going to let the period be 1, which is the entire length of the time series. + +```{julia} +freqs = 1:10 +num_freqs = length(freqs) +period = 1 +cyclic_features = [sinpi.(2 .* freqs' .* x ./ period) cospi.(2 .* freqs' .* x ./ period)] + +plot_freqs = [1, 3, 5] +freq_ptl = plot( + cyclic_features[:, plot_freqs]; + label=permutedims(["sin(2π$(f)x)" for f in plot_freqs]), + title="Cyclical features subset", +) +``` + +Having constructed the cyclical features, we can finally build our model. The model we will implement looks like this + +$$ +f(t) = \alpha + \beta_t t + \sum_{i=1}^F \beta_{\sin{},i} \sin{}(2\pi f_i t) + \sum_{i=1}^F \beta_{\cos{},i} \cos{}(2\pi f_i t), +$$ + +with a Gaussian likelihood $y \sim \mathcal{N}(f(t), \sigma^2)$. +For convenience we are treating the cyclical feature weights $\beta_{\sin{},i}$ and $\beta_{\cos{},i}$ the same in code and weight them with $\beta_c$. +And just because it is so easy, we parameterise our model with the operation with which to apply the cyclic effects. +This lets us use the exact same code for both additive and multiplicative models. +Finally, we plot prior predictive samples to make sure our priors make sense. + +```{julia} +@model function decomp_model(t, c, op) + α ~ Normal(0, 10) + βt ~ Normal(0, 2) + βc ~ MvNormal(Zeros(size(c, 2)), I) + σ ~ truncated(Normal(0, 0.1); lower=0) + + cyclic = c * βc + trend = α .+ βt .* t + μ = op(trend, cyclic) + y ~ MvNormal(μ, σ^2 * I) + return (; trend, cyclic) +end + +y_prior_samples = mapreduce(hcat, 1:100) do _ + rand(decomp_model(t, cyclic_features, +)).y +end +plot(t, y_prior_samples; linewidth=1, alpha=0.5, color=1, label="", title="Prior samples") +scatter!(t, yf; color=2, label="Data") +``` + +With the model specified and with a reasonable prior we can now let Turing decompose the time series for us! + +```{julia} +function mean_ribbon(samples) + qs = quantile(samples) + low = qs[:, Symbol("2.5%")] + up = qs[:, Symbol("97.5%")] + m = mean(samples)[:, :mean] + return m, (m - low, up - m) +end + +function get_decomposition(model, x, cyclic_features, chain, op) + chain_params = Turing.MCMCChains.get_sections(chain, :parameters) + return generated_quantities(model(x, cyclic_features, op), chain_params) +end + +function plot_fit(x, y, decomp, ymax) + trend = mapreduce(x -> x.trend, hcat, decomp) + cyclic = mapreduce(x -> x.cyclic, hcat, decomp) + + trend_plt = plot( + x, + trend .+ ymax; + color=1, + label=nothing, + alpha=0.2, + title="Trend", + xlabel="Time", + ylabel="f₁(t)", + ) + ls = [ones(length(t)) t] \ y + α̂, β̂ = ls[1], ls[2:end] + plot!( + trend_plt, + t, + α̂ .+ t .* β̂ .+ ymax; + label="Least squares trend", + color=5, + linewidth=4, + ) + + scatter!(trend_plt, x, y .+ ymax; label=nothing, color=2, legend=:topleft) + cyclic_plt = plot( + x, + cyclic; + color=1, + label=nothing, + alpha=0.2, + title="Cyclic effect", + xlabel="Time", + ylabel="f₂(t)", + ) + return trend_plt, cyclic_plt +end + +chain = sample(decomp_model(x, cyclic_features, +) | (; y=yf), NUTS(), 2000, progress=false) +yf_samples = predict(decomp_model(x, cyclic_features, +), chain) +m, conf = mean_ribbon(yf_samples) +predictive_plt = plot( + t, + m .+ yf_max; + ribbon=conf, + label="Posterior density", + title="Posterior decomposition", + xlabel="Time", + ylabel="f(t)", +) +scatter!(predictive_plt, t, yf .+ yf_max; color=2, label="Data", legend=:topleft) + +decomp = get_decomposition(decomp_model, x, cyclic_features, chain, +) +decomposed_plt = plot_fit(t, yf, decomp, yf_max) +plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) +``` + +```{julia} +#| echo: false +let + @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" + lower_quantile = m .- conf[1] # 2.5% quantile + upper_quantile = m .+ conf[2] # 97.5% quantile + @assert mean(lower_quantile .≤ yf .≤ upper_quantile) ≥ 0.9 "Surprisingly few observations in predicted 95% interval: $(mean(lower_quantile .≤ yf .≤ upper_quantile))" +end +``` + +Inference is successful and the posterior beautifully captures the data. +We see that the least squares linear fit deviates somewhat from the posterior trend. +Since our model takes cyclic effects into account separately, +we get a better estimate of the true overall trend than if we would have just fitted a line. +But what frequency content did the model identify? + + +```{julia} +function plot_cyclic_features(βsin, βcos) + labels = reshape(["freq = $i" for i in freqs], 1, :) + colors = collect(freqs)' + style = reshape([i <= 10 ? :solid : :dash for i in 1:length(labels)], 1, :) + sin_features_plt = density( + βsin[:, :, 1]; + title="Sine features posterior", + label=labels, + ylabel="Density", + xlabel="Weight", + color=colors, + linestyle=style, + legend=nothing, + ) + cos_features_plt = density( + βcos[:, :, 1]; + title="Cosine features posterior", + ylabel="Density", + xlabel="Weight", + label=nothing, + color=colors, + linestyle=style, + ) + + return seasonal_features_plt = plot( + sin_features_plt, + cos_features_plt; + layout=(2, 1), + size=(800, 600), + legend=:outerright, + ) +end + +βc = Array(group(chain, :βc)) +plot_cyclic_features(βc[:, begin:num_freqs, :], βc[:, (num_freqs + 1):end, :]) +``` + +Plotting the posterior over the cyclic features reveals that the model managed to extract the true frequency content. + +Since we wrote our model to accept a combining operator, we can easily run the same analysis for a multiplicative model. + +```{julia} +yg = g.(t) .+ σ_true .* randn(size(t)) + +y_prior_samples = mapreduce(hcat, 1:100) do _ + rand(decomp_model(t, cyclic_features, .*)).y +end +plot(t, y_prior_samples; linewidth=1, alpha=0.5, color=1, label="", title="Prior samples") +scatter!(t, yf; color=2, label="Data") +``` + +```{julia} +chain = sample(decomp_model(x, cyclic_features, .*) | (; y=yg), NUTS(), 2000, progress=false) +yg_samples = predict(decomp_model(x, cyclic_features, .*), chain) +m, conf = mean_ribbon(yg_samples) +predictive_plt = plot( + t, + m; + ribbon=conf, + label="Posterior density", + title="Posterior decomposition", + xlabel="Time", + ylabel="g(t)", +) +scatter!(predictive_plt, t, yg; color=2, label="Data", legend=:topleft) + +decomp = get_decomposition(decomp_model, x, cyclic_features, chain, .*) +decomposed_plt = plot_fit(t, yg, decomp, 0) +plot(predictive_plt, decomposed_plt...; layout=(3, 1), size=(700, 1000)) +``` + +```{julia} +#| echo: false +let + @assert mean(ess(chain)[:, :ess]) > 500 "Mean ESS: $(mean(ess(chain)[:, :ess])) - not > 500" + lower_quantile = m .- conf[1] # 2.5% quantile + upper_quantile = m .+ conf[2] # 97.5% quantile + @assert mean(lower_quantile .≤ yg .≤ upper_quantile) ≥ 0.9 "Surprisingly few observations in predicted 95% interval: $(mean(lower_quantile .≤ yg .≤ upper_quantile))" +end +``` + +The model fits! What about the infered cyclic components? + +```{julia} +βc = Array(group(chain, :βc)) +plot_cyclic_features(βc[:, begin:num_freqs, :], βc[:, (num_freqs + 1):end, :]) +``` + +While multiplicative model fits to the data, it does not recover the true parameters for this dataset. + +# Wrapping up + +In this tutorial we have seen how to implement and fit time series models using additive and multiplicative decomposition. +We also saw how to visualise the model fit, and how to interpret learned cyclical components. diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/14-minituring/Project.toml b/tutorials/14-minituring/Project.toml old mode 100644 new mode 100755 index 01de61277..421e78f2d --- a/tutorials/14-minituring/Project.toml +++ b/tutorials/14-minituring/Project.toml @@ -1,8 +1,8 @@ -[deps] -AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/14-minituring/index.qmd b/tutorials/14-minituring/index.qmd old mode 100644 new mode 100755 index c1b8a452a..939fb6a60 --- a/tutorials/14-minituring/index.qmd +++ b/tutorials/14-minituring/index.qmd @@ -1,286 +1,293 @@ ---- -title: MiniTuring -engine: julia ---- - -In this tutorial we develop a very simple probabilistic programming language. -The implementation is similar to [DynamicPPL](https://github.com/TuringLang/DynamicPPL.jl). -This is intentional as we want to demonstrate some key ideas from Turing's internal implementation. - -To make things easy to understand and to implement we restrict our language to a very simple subset of the language that Turing actually supports. -Defining an accurate syntax description is not our goal here, instead, we give a simple example and all similar programs should work. - -# Consider a probabilistic model defined by - -$$ -\begin{aligned} -a &\sim \operatorname{Normal}(0.5, 1^2) \\ -b &\sim \operatorname{Normal}(a, 2^2) \\ -x &\sim \operatorname{Normal}(b, 0.5^2) -\end{aligned} -$$ - -We assume that `x` is data, i.e., an observed variable. -In our small language this model will be defined as - -```{julia} -#| eval: false -@mini_model function m(x) - a ~ Normal(0.5, 1) - b ~ Normal(a, 2) - x ~ Normal(b, 0.5) - return nothing -end -``` - -Specifically, we demand that - - - all observed variables are arguments of the program, - - the model definition does not contain any control flow, - - all variables are scalars, and - - the function returns `nothing`. - -First, we import some required packages: - -```{julia} -using MacroTools, Distributions, Random, AbstractMCMC, MCMCChains -``` - -Before getting to the actual "compiler", we first build the data structure for the program trace. -A program trace for a probabilistic programming language needs to at least record the values of stochastic variables and their log-probabilities. - -```{julia} -struct VarInfo{V,L} - values::V - logps::L -end - -VarInfo() = VarInfo(Dict{Symbol,Float64}(), Dict{Symbol,Float64}()) - -function Base.setindex!(varinfo::VarInfo, (value, logp), var_id) - varinfo.values[var_id] = value - varinfo.logps[var_id] = logp - return varinfo -end -``` - -Internally, our probabilistic programming language works with two main functions: - - - `assume` for sampling unobserved variables and computing their log-probabilities, and - - `observe` for computing log-probabilities of observed variables (but not sampling them). - -For different inference algorithms we may have to use different sampling procedures and different log-probability computations. -For instance, in some cases we might want to sample all variables from their prior distributions and in other cases we might only want to compute the log-likelihood of the observations based on a given set of values for the unobserved variables. -Thus depending on the inference algorithm we want to use different `assume` and `observe` implementations. -We can achieve this by providing this `context` information as a function argument to `assume` and `observe`. - -**Note:** *Although the context system in this tutorial is inspired by DynamicPPL, Turing's context system is much more complicated for flexibility and efficiency reasons. -Thus readers are advised to refer to the documentation of DynamicPPL and Turing for more detailed information about their context system.* - -Here we can see the implementation of a sampler that draws values of unobserved variables from the prior and computes the log-probability for every variable. - -```{julia} -struct SamplingContext{S<:AbstractMCMC.AbstractSampler,R<:Random.AbstractRNG} - rng::R - sampler::S -end - -struct PriorSampler <: AbstractMCMC.AbstractSampler end - -function observe(context::SamplingContext, varinfo, dist, var_id, var_value) - logp = logpdf(dist, var_value) - varinfo[var_id] = (var_value, logp) - return nothing -end - -function assume(context::SamplingContext{PriorSampler}, varinfo, dist, var_id) - sample = Random.rand(context.rng, dist) - logp = logpdf(dist, sample) - varinfo[var_id] = (sample, logp) - return sample -end; -``` - -Next we define the "compiler" for our simple programming language. -The term compiler is actually a bit misleading here since its only purpose is to transform the function definition in the `@mini_model` macro by - - - adding the context information (`context`) and the tracing data structure (`varinfo`) as additional arguments, and - - replacing tildes with calls to `assume` and `observe`. - -Afterwards, as usual the Julia compiler will just-in-time compile the model function when it is called. - -The manipulation of Julia expressions is an advanced part of the Julia language. -The [Julia documentation](https://docs.julialang.org/en/v1/manual/metaprogramming/) provides an introduction to and more details about this so-called metaprogramming. - -```{julia} -macro mini_model(expr) - return esc(mini_model(expr)) -end - -function mini_model(expr) - # Split the function definition into a dictionary with its name, arguments, body etc. - def = MacroTools.splitdef(expr) - - # Replace tildes in the function body with calls to `assume` or `observe` - def[:body] = MacroTools.postwalk(def[:body]) do sub_expr - if MacroTools.@capture(sub_expr, var_ ~ dist_) - if var in def[:args] - # If the variable is an argument of the model function, it is observed - return :($(observe)(context, varinfo, $dist, $(Meta.quot(var)), $var)) - else - # Otherwise it is unobserved - return :($var = $(assume)(context, varinfo, $dist, $(Meta.quot(var)))) - end - else - return sub_expr - end - end - - # Add `context` and `varinfo` arguments to the model function - def[:args] = vcat(:varinfo, :context, def[:args]) - - # Reassemble the function definition from its name, arguments, body etc. - return MacroTools.combinedef(def) -end; -``` - -For inference, we make use of the [AbstractMCMC interface](https://turinglang.github.io/AbstractMCMC.jl/dev/). -It provides a default implementation of a `sample` function for sampling a Markov chain. -The default implementation already supports e.g. sampling of multiple chains in parallel, thinning of samples, or discarding initial samples. - -The AbstractMCMC interface requires us to at least - - - define a model that is a subtype of `AbstractMCMC.AbstractModel`, - - define a sampler that is a subtype of `AbstractMCMC.AbstractSampler`, - - implement `AbstractMCMC.step` for our model and sampler. - -Thus here we define a `MiniModel` model. -In this model we store the model function and the observed data. - -```{julia} -struct MiniModel{F,D} <: AbstractMCMC.AbstractModel - f::F - data::D # a NamedTuple of all the data -end -``` - -In the Turing compiler, the model-specific `DynamicPPL.Model` is constructed automatically when calling the model function. -But for the sake of simplicity here we construct the model manually. - -To illustrate probabilistic inference with our mini language we implement an extremely simplistic Random-Walk Metropolis-Hastings sampler. -We hard-code the proposal step as part of the sampler and only allow normal distributions with zero mean and fixed standard deviation. -The Metropolis-Hastings sampler in Turing is more flexible. - -```{julia} -struct MHSampler{T<:Real} <: AbstractMCMC.AbstractSampler - sigma::T -end - -MHSampler() = MHSampler(1) - -function assume(context::SamplingContext{<:MHSampler}, varinfo, dist, var_id) - sampler = context.sampler - old_value = varinfo.values[var_id] - - # propose a random-walk step, i.e, add the current value to a random - # value sampled from a Normal distribution centered at 0 - value = rand(context.rng, Normal(old_value, sampler.sigma)) - logp = Distributions.logpdf(dist, value) - varinfo[var_id] = (value, logp) - - return value -end; -``` - -We need to define two `step` functions, one for the first step and the other for the following steps. -In the first step we sample values from the prior distributions and in the following steps we sample with the random-walk proposal. -The two functions are identified by the different arguments they take. - -```{julia} -# The fist step: Sampling from the prior distributions -function AbstractMCMC.step( - rng::Random.AbstractRNG, model::MiniModel, sampler::MHSampler; kwargs... -) - vi = VarInfo() - ctx = SamplingContext(rng, PriorSampler()) - model.f(vi, ctx, values(model.data)...) - return vi, vi -end - -# The following steps: Sampling with random-walk proposal -function AbstractMCMC.step( - rng::Random.AbstractRNG, - model::MiniModel, - sampler::MHSampler, - prev_state::VarInfo; # is just the old trace - kwargs..., -) - vi = prev_state - new_vi = deepcopy(vi) - ctx = SamplingContext(rng, sampler) - model.f(new_vi, ctx, values(model.data)...) - - # Compute log acceptance probability - # Since the proposal is symmetric the computation can be simplified - logα = sum(values(new_vi.logps)) - sum(values(vi.logps)) - - # Accept proposal with computed acceptance probability - if -randexp(rng) < logα - return new_vi, new_vi - else - return prev_state, prev_state - end -end; -``` - -To make it easier to analyze the samples and compare them with results from Turing, additionally we define a version of `AbstractMCMC.bundle_samples` for our model and sampler that returns a `MCMCChains.Chains` object of samples. - -```{julia} -function AbstractMCMC.bundle_samples( - samples, model::MiniModel, ::MHSampler, ::Any, ::Type{Chains}; kwargs... -) - # We get a vector of traces - values = [sample.values for sample in samples] - params = [key for key in keys(values[1]) if key ∉ keys(model.data)] - vals = reduce(hcat, [value[p] for value in values] for p in params) - # Composing the `Chains` data-structure, of which analyzing infrastructure is provided - chains = Chains(vals, params) - return chains -end; -``` - -Let us check how our mini probabilistic programming language works. -We define the probabilistic model: - -```{julia} -@mini_model function m(x) - a ~ Normal(0.5, 1) - b ~ Normal(a, 2) - x ~ Normal(b, 0.5) - return nothing -end; -``` - -We perform inference with data `x = 3.0`: - -```{julia} -sample(MiniModel(m, (x=3.0,)), MHSampler(), 1_000_000; chain_type=Chains, progress=false) -``` - -We compare these results with Turing. - -```{julia} -using Turing -using PDMats - -@model function turing_m(x) - a ~ Normal(0.5, 1) - b ~ Normal(a, 2) - x ~ Normal(b, 0.5) - return nothing -end - -sample(turing_m(3.0), MH(ScalMat(2, 1.0)), 1_000_000, progress=false) -``` - +--- +title: MiniTuring +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In this tutorial we develop a very simple probabilistic programming language. +The implementation is similar to [DynamicPPL](https://github.com/TuringLang/DynamicPPL.jl). +This is intentional as we want to demonstrate some key ideas from Turing's internal implementation. + +To make things easy to understand and to implement we restrict our language to a very simple subset of the language that Turing actually supports. +Defining an accurate syntax description is not our goal here, instead, we give a simple example and all similar programs should work. + +# Consider a probabilistic model defined by + +$$ +\begin{aligned} +a &\sim \operatorname{Normal}(0.5, 1^2) \\ +b &\sim \operatorname{Normal}(a, 2^2) \\ +x &\sim \operatorname{Normal}(b, 0.5^2) +\end{aligned} +$$ + +We assume that `x` is data, i.e., an observed variable. +In our small language this model will be defined as + +```{julia} +#| eval: false +@mini_model function m(x) + a ~ Normal(0.5, 1) + b ~ Normal(a, 2) + x ~ Normal(b, 0.5) + return nothing +end +``` + +Specifically, we demand that + + - all observed variables are arguments of the program, + - the model definition does not contain any control flow, + - all variables are scalars, and + - the function returns `nothing`. + +First, we import some required packages: + +```{julia} +using MacroTools, Distributions, Random, AbstractMCMC, MCMCChains +``` + +Before getting to the actual "compiler", we first build the data structure for the program trace. +A program trace for a probabilistic programming language needs to at least record the values of stochastic variables and their log-probabilities. + +```{julia} +struct VarInfo{V,L} + values::V + logps::L +end + +VarInfo() = VarInfo(Dict{Symbol,Float64}(), Dict{Symbol,Float64}()) + +function Base.setindex!(varinfo::VarInfo, (value, logp), var_id) + varinfo.values[var_id] = value + varinfo.logps[var_id] = logp + return varinfo +end +``` + +Internally, our probabilistic programming language works with two main functions: + + - `assume` for sampling unobserved variables and computing their log-probabilities, and + - `observe` for computing log-probabilities of observed variables (but not sampling them). + +For different inference algorithms we may have to use different sampling procedures and different log-probability computations. +For instance, in some cases we might want to sample all variables from their prior distributions and in other cases we might only want to compute the log-likelihood of the observations based on a given set of values for the unobserved variables. +Thus depending on the inference algorithm we want to use different `assume` and `observe` implementations. +We can achieve this by providing this `context` information as a function argument to `assume` and `observe`. + +**Note:** *Although the context system in this tutorial is inspired by DynamicPPL, Turing's context system is much more complicated for flexibility and efficiency reasons. +Thus readers are advised to refer to the documentation of DynamicPPL and Turing for more detailed information about their context system.* + +Here we can see the implementation of a sampler that draws values of unobserved variables from the prior and computes the log-probability for every variable. + +```{julia} +struct SamplingContext{S<:AbstractMCMC.AbstractSampler,R<:Random.AbstractRNG} + rng::R + sampler::S +end + +struct PriorSampler <: AbstractMCMC.AbstractSampler end + +function observe(context::SamplingContext, varinfo, dist, var_id, var_value) + logp = logpdf(dist, var_value) + varinfo[var_id] = (var_value, logp) + return nothing +end + +function assume(context::SamplingContext{PriorSampler}, varinfo, dist, var_id) + sample = Random.rand(context.rng, dist) + logp = logpdf(dist, sample) + varinfo[var_id] = (sample, logp) + return sample +end; +``` + +Next we define the "compiler" for our simple programming language. +The term compiler is actually a bit misleading here since its only purpose is to transform the function definition in the `@mini_model` macro by + + - adding the context information (`context`) and the tracing data structure (`varinfo`) as additional arguments, and + - replacing tildes with calls to `assume` and `observe`. + +Afterwards, as usual the Julia compiler will just-in-time compile the model function when it is called. + +The manipulation of Julia expressions is an advanced part of the Julia language. +The [Julia documentation](https://docs.julialang.org/en/v1/manual/metaprogramming/) provides an introduction to and more details about this so-called metaprogramming. + +```{julia} +macro mini_model(expr) + return esc(mini_model(expr)) +end + +function mini_model(expr) + # Split the function definition into a dictionary with its name, arguments, body etc. + def = MacroTools.splitdef(expr) + + # Replace tildes in the function body with calls to `assume` or `observe` + def[:body] = MacroTools.postwalk(def[:body]) do sub_expr + if MacroTools.@capture(sub_expr, var_ ~ dist_) + if var in def[:args] + # If the variable is an argument of the model function, it is observed + return :($(observe)(context, varinfo, $dist, $(Meta.quot(var)), $var)) + else + # Otherwise it is unobserved + return :($var = $(assume)(context, varinfo, $dist, $(Meta.quot(var)))) + end + else + return sub_expr + end + end + + # Add `context` and `varinfo` arguments to the model function + def[:args] = vcat(:varinfo, :context, def[:args]) + + # Reassemble the function definition from its name, arguments, body etc. + return MacroTools.combinedef(def) +end; +``` + +For inference, we make use of the [AbstractMCMC interface](https://turinglang.github.io/AbstractMCMC.jl/dev/). +It provides a default implementation of a `sample` function for sampling a Markov chain. +The default implementation already supports e.g. sampling of multiple chains in parallel, thinning of samples, or discarding initial samples. + +The AbstractMCMC interface requires us to at least + + - define a model that is a subtype of `AbstractMCMC.AbstractModel`, + - define a sampler that is a subtype of `AbstractMCMC.AbstractSampler`, + - implement `AbstractMCMC.step` for our model and sampler. + +Thus here we define a `MiniModel` model. +In this model we store the model function and the observed data. + +```{julia} +struct MiniModel{F,D} <: AbstractMCMC.AbstractModel + f::F + data::D # a NamedTuple of all the data +end +``` + +In the Turing compiler, the model-specific `DynamicPPL.Model` is constructed automatically when calling the model function. +But for the sake of simplicity here we construct the model manually. + +To illustrate probabilistic inference with our mini language we implement an extremely simplistic Random-Walk Metropolis-Hastings sampler. +We hard-code the proposal step as part of the sampler and only allow normal distributions with zero mean and fixed standard deviation. +The Metropolis-Hastings sampler in Turing is more flexible. + +```{julia} +struct MHSampler{T<:Real} <: AbstractMCMC.AbstractSampler + sigma::T +end + +MHSampler() = MHSampler(1) + +function assume(context::SamplingContext{<:MHSampler}, varinfo, dist, var_id) + sampler = context.sampler + old_value = varinfo.values[var_id] + + # propose a random-walk step, i.e, add the current value to a random + # value sampled from a Normal distribution centered at 0 + value = rand(context.rng, Normal(old_value, sampler.sigma)) + logp = Distributions.logpdf(dist, value) + varinfo[var_id] = (value, logp) + + return value +end; +``` + +We need to define two `step` functions, one for the first step and the other for the following steps. +In the first step we sample values from the prior distributions and in the following steps we sample with the random-walk proposal. +The two functions are identified by the different arguments they take. + +```{julia} +# The fist step: Sampling from the prior distributions +function AbstractMCMC.step( + rng::Random.AbstractRNG, model::MiniModel, sampler::MHSampler; kwargs... +) + vi = VarInfo() + ctx = SamplingContext(rng, PriorSampler()) + model.f(vi, ctx, values(model.data)...) + return vi, vi +end + +# The following steps: Sampling with random-walk proposal +function AbstractMCMC.step( + rng::Random.AbstractRNG, + model::MiniModel, + sampler::MHSampler, + prev_state::VarInfo; # is just the old trace + kwargs..., +) + vi = prev_state + new_vi = deepcopy(vi) + ctx = SamplingContext(rng, sampler) + model.f(new_vi, ctx, values(model.data)...) + + # Compute log acceptance probability + # Since the proposal is symmetric the computation can be simplified + logα = sum(values(new_vi.logps)) - sum(values(vi.logps)) + + # Accept proposal with computed acceptance probability + if -randexp(rng) < logα + return new_vi, new_vi + else + return prev_state, prev_state + end +end; +``` + +To make it easier to analyze the samples and compare them with results from Turing, additionally we define a version of `AbstractMCMC.bundle_samples` for our model and sampler that returns a `MCMCChains.Chains` object of samples. + +```{julia} +function AbstractMCMC.bundle_samples( + samples, model::MiniModel, ::MHSampler, ::Any, ::Type{Chains}; kwargs... +) + # We get a vector of traces + values = [sample.values for sample in samples] + params = [key for key in keys(values[1]) if key ∉ keys(model.data)] + vals = reduce(hcat, [value[p] for value in values] for p in params) + # Composing the `Chains` data-structure, of which analyzing infrastructure is provided + chains = Chains(vals, params) + return chains +end; +``` + +Let us check how our mini probabilistic programming language works. +We define the probabilistic model: + +```{julia} +@mini_model function m(x) + a ~ Normal(0.5, 1) + b ~ Normal(a, 2) + x ~ Normal(b, 0.5) + return nothing +end; +``` + +We perform inference with data `x = 3.0`: + +```{julia} +sample(MiniModel(m, (x=3.0,)), MHSampler(), 1_000_000; chain_type=Chains, progress=false) +``` + +We compare these results with Turing. + +```{julia} +using Turing +using PDMats + +@model function turing_m(x) + a ~ Normal(0.5, 1) + b ~ Normal(a, 2) + x ~ Normal(b, 0.5) + return nothing +end + +sample(turing_m(3.0), MH(ScalMat(2, 1.0)), 1_000_000, progress=false) +``` + As you can see, with our simple probabilistic programming language and custom samplers we get similar results as Turing. \ No newline at end of file diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/15-gaussian-processes/Project.toml b/tutorials/15-gaussian-processes/Project.toml old mode 100644 new mode 100755 index 31c233e7f..61c6c8a5c --- a/tutorials/15-gaussian-processes/Project.toml +++ b/tutorials/15-gaussian-processes/Project.toml @@ -1,10 +1,10 @@ -[deps] -AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" -CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +AbstractGPs = "99985d1d-32ba-4be9-9821-2ec096f28918" +CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" +DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe" +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/15-gaussian-processes/index.qmd b/tutorials/15-gaussian-processes/index.qmd old mode 100644 new mode 100755 index abf8689b6..312b617ce --- a/tutorials/15-gaussian-processes/index.qmd +++ b/tutorials/15-gaussian-processes/index.qmd @@ -1,163 +1,167 @@ ---- -title: Introduction to Gaussian Processes using JuliaGPs and Turing.jl -engine: julia ---- - -[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) packages integrate well with Turing.jl because they implement the Distributions.jl -interface. -You should be able to understand what is going on in this tutorial if you know what a GP is. -For a more in-depth understanding of the -[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) functionality -used here, please consult the -[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) docs. - -In this tutorial, we will model the putting dataset discussed in chapter 21 of -[Bayesian Data Analysis](http://www.stat.columbia.edu/%7Egelman/book/). -The dataset comprises the result of measuring how often a golfer successfully gets the ball -in the hole, depending on how far away from it they are. -The goal of inference is to estimate the probability of any given shot being successful at a -given distance. - -### Let's download the data and take a look at it: - -```{julia} -using CSV, DataDeps, DataFrames - -ENV["DATADEPS_ALWAYS_ACCEPT"] = true -register( - DataDep( - "putting", - "Putting data from BDA", - "http://www.stat.columbia.edu/~gelman/book/data/golf.dat", - "fc28d83896af7094d765789714524d5a389532279b64902866574079c1a977cc", - ), -) - -fname = joinpath(datadep"putting", "golf.dat") -df = CSV.read(fname, DataFrame; delim=' ', ignorerepeated=true) -df[1:5, :] -``` - -We've printed the first 5 rows of the dataset (which comprises only 19 rows in total). -Observe it has three columns: - - 1. `distance` -- how far away from the hole. I'll refer to `distance` as `d` throughout the rest of this tutorial - 2. `n` -- how many shots were taken from a given distance - 3. `y` -- how many shots were successful from a given distance - -We will use a Binomial model for the data, whose success probability is parametrised by a -transformation of a GP. Something along the lines of: -$$ -f \sim \operatorname{GP}(0, k) \\ -y_j \mid f(d_j) \sim \operatorname{Binomial}(n_j, g(f(d_j))) \\ -g(x) := \frac{1}{1 + e^{-x}} -$$ - -To do this, let's define our Turing.jl model: - -```{julia} -using AbstractGPs, LogExpFunctions, Turing - -@model function putting_model(d, n; jitter=1e-4) - v ~ Gamma(2, 1) - l ~ Gamma(4, 1) - f = GP(v * with_lengthscale(SEKernel(), l)) - f_latent ~ f(d, jitter) - y ~ product_distribution(Binomial.(n, logistic.(f_latent))) - return (fx=f(d, jitter), f_latent=f_latent, y=y) -end -``` - -We first define an `AbstractGPs.GP`, which represents a distribution over functions, and -is entirely separate from Turing.jl. -We place a prior over its variance `v` and length-scale `l`. -`f(d, jitter)` constructs the multivariate Gaussian comprising the random variables -in `f` whose indices are in `d` (+ a bit of independent Gaussian noise with variance -`jitter` -- see [the docs](https://juliagaussianprocesses.github.io/AbstractGPs.jl/dev/api/#FiniteGP-and-AbstractGP) -for more details). -`f(d, jitter) isa AbstractMvNormal`, and is the bit of AbstractGPs.jl that implements the -Distributions.jl interface, so it's legal to put it on the right hand side -of a `~`. -From this you should deduce that `f_latent` is distributed according to a multivariate -Gaussian. -The remaining lines comprise standard Turing.jl code that is encountered in other tutorials -and Turing documentation. - -Before performing inference, we might want to inspect the prior that our model places over -the data, to see whether there is anything that is obviously wrong. -These kinds of prior predictive checks are straightforward to perform using Turing.jl, since -it is possible to sample from the prior easily by just calling the model: - -```{julia} -m = putting_model(Float64.(df.distance), df.n) -m().y -``` - -We make use of this to see what kinds of datasets we simulate from the prior: - -```{julia} -using Plots - -function plot_data(d, n, y, xticks, yticks) - ylims = (0, round(maximum(n), RoundUp; sigdigits=2)) - margin = -0.5 * Plots.mm - plt = plot(; xticks=xticks, yticks=yticks, ylims=ylims, margin=margin, grid=false) - bar!(plt, d, n; color=:red, label="", alpha=0.5) - bar!(plt, d, y; label="", color=:blue, alpha=0.7) - return plt -end - -# Construct model and run some prior predictive checks. -m = putting_model(Float64.(df.distance), df.n) -hists = map(1:20) do j - xticks = j > 15 ? :auto : nothing - yticks = rem(j, 5) == 1 ? :auto : nothing - return plot_data(df.distance, df.n, m().y, xticks, yticks) -end -plot(hists...; layout=(4, 5)) -``` - -In this case, the only prior knowledge I have is that the proportion of successful shots -ought to decrease monotonically as the distance from the hole increases, which should show -up in the data as the blue lines generally going down as we move from left to right on each -graph. -Unfortunately, there is not a simple way to enforce monotonicity in the samples from a GP, -and we can see this in some of the plots above, so we must hope that we have enough data to -ensure that this relationship approximately holds under the posterior. -In any case, you can judge for yourself whether you think this is the most useful -visualisation that we can perform -- if you think there is something better to look at, -please let us know! - -Moving on, we generate samples from the posterior using the default `NUTS` sampler. -We'll make use of [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl), as it has -better performance than [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl/) on -this example. See Turing.jl's docs on Automatic Differentiation for more info. - - -```{julia} -using Random, ReverseDiff - -Turing.setadbackend(:reversediff) -Turing.setrdcache(true) - -m_post = m | (y=df.y,) -chn = sample(Xoshiro(123456), m_post, NUTS(), 1_000, progress=false) -``` - -We can use these samples and the `posterior` function from `AbstractGPs` to sample from the -posterior probability of success at any distance we choose: - -```{julia} -d_pred = 1:0.2:21 -samples = map(generated_quantities(m_post, chn)[1:10:end]) do x - return logistic.(rand(posterior(x.fx, x.f_latent)(d_pred, 1e-4))) -end -p = plot() -plot!(d_pred, reduce(hcat, samples); label="", color=:blue, alpha=0.2) -scatter!(df.distance, df.y ./ df.n; label="", color=:red) -``` - -We can see that the general trend is indeed down as the distance from the hole increases, -and that if we move away from the data, the posterior uncertainty quickly inflates. -This suggests that the model is probably going to do a reasonable job of interpolating +--- +title: Introduction to Gaussian Processes using JuliaGPs and Turing.jl +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) packages integrate well with Turing.jl because they implement the Distributions.jl +interface. +You should be able to understand what is going on in this tutorial if you know what a GP is. +For a more in-depth understanding of the +[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) functionality +used here, please consult the +[JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) docs. + +In this tutorial, we will model the putting dataset discussed in chapter 21 of +[Bayesian Data Analysis](http://www.stat.columbia.edu/%7Egelman/book/). +The dataset comprises the result of measuring how often a golfer successfully gets the ball +in the hole, depending on how far away from it they are. +The goal of inference is to estimate the probability of any given shot being successful at a +given distance. + +### Let's download the data and take a look at it: + +```{julia} +using CSV, DataDeps, DataFrames + +ENV["DATADEPS_ALWAYS_ACCEPT"] = true +register( + DataDep( + "putting", + "Putting data from BDA", + "http://www.stat.columbia.edu/~gelman/book/data/golf.dat", + "fc28d83896af7094d765789714524d5a389532279b64902866574079c1a977cc", + ), +) + +fname = joinpath(datadep"putting", "golf.dat") +df = CSV.read(fname, DataFrame; delim=' ', ignorerepeated=true) +df[1:5, :] +``` + +We've printed the first 5 rows of the dataset (which comprises only 19 rows in total). +Observe it has three columns: + + 1. `distance` -- how far away from the hole. I'll refer to `distance` as `d` throughout the rest of this tutorial + 2. `n` -- how many shots were taken from a given distance + 3. `y` -- how many shots were successful from a given distance + +We will use a Binomial model for the data, whose success probability is parametrised by a +transformation of a GP. Something along the lines of: +$$ +f \sim \operatorname{GP}(0, k) \\ +y_j \mid f(d_j) \sim \operatorname{Binomial}(n_j, g(f(d_j))) \\ +g(x) := \frac{1}{1 + e^{-x}} +$$ + +To do this, let's define our Turing.jl model: + +```{julia} +using AbstractGPs, LogExpFunctions, Turing + +@model function putting_model(d, n; jitter=1e-4) + v ~ Gamma(2, 1) + l ~ Gamma(4, 1) + f = GP(v * with_lengthscale(SEKernel(), l)) + f_latent ~ f(d, jitter) + y ~ product_distribution(Binomial.(n, logistic.(f_latent))) + return (fx=f(d, jitter), f_latent=f_latent, y=y) +end +``` + +We first define an `AbstractGPs.GP`, which represents a distribution over functions, and +is entirely separate from Turing.jl. +We place a prior over its variance `v` and length-scale `l`. +`f(d, jitter)` constructs the multivariate Gaussian comprising the random variables +in `f` whose indices are in `d` (+ a bit of independent Gaussian noise with variance +`jitter` -- see [the docs](https://juliagaussianprocesses.github.io/AbstractGPs.jl/dev/api/#FiniteGP-and-AbstractGP) +for more details). +`f(d, jitter) isa AbstractMvNormal`, and is the bit of AbstractGPs.jl that implements the +Distributions.jl interface, so it's legal to put it on the right hand side +of a `~`. +From this you should deduce that `f_latent` is distributed according to a multivariate +Gaussian. +The remaining lines comprise standard Turing.jl code that is encountered in other tutorials +and Turing documentation. + +Before performing inference, we might want to inspect the prior that our model places over +the data, to see whether there is anything that is obviously wrong. +These kinds of prior predictive checks are straightforward to perform using Turing.jl, since +it is possible to sample from the prior easily by just calling the model: + +```{julia} +m = putting_model(Float64.(df.distance), df.n) +m().y +``` + +We make use of this to see what kinds of datasets we simulate from the prior: + +```{julia} +using Plots + +function plot_data(d, n, y, xticks, yticks) + ylims = (0, round(maximum(n), RoundUp; sigdigits=2)) + margin = -0.5 * Plots.mm + plt = plot(; xticks=xticks, yticks=yticks, ylims=ylims, margin=margin, grid=false) + bar!(plt, d, n; color=:red, label="", alpha=0.5) + bar!(plt, d, y; label="", color=:blue, alpha=0.7) + return plt +end + +# Construct model and run some prior predictive checks. +m = putting_model(Float64.(df.distance), df.n) +hists = map(1:20) do j + xticks = j > 15 ? :auto : nothing + yticks = rem(j, 5) == 1 ? :auto : nothing + return plot_data(df.distance, df.n, m().y, xticks, yticks) +end +plot(hists...; layout=(4, 5)) +``` + +In this case, the only prior knowledge I have is that the proportion of successful shots +ought to decrease monotonically as the distance from the hole increases, which should show +up in the data as the blue lines generally going down as we move from left to right on each +graph. +Unfortunately, there is not a simple way to enforce monotonicity in the samples from a GP, +and we can see this in some of the plots above, so we must hope that we have enough data to +ensure that this relationship approximately holds under the posterior. +In any case, you can judge for yourself whether you think this is the most useful +visualisation that we can perform -- if you think there is something better to look at, +please let us know! + +Moving on, we generate samples from the posterior using the default `NUTS` sampler. +We'll make use of [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl), as it has +better performance than [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl/) on +this example. See Turing.jl's docs on Automatic Differentiation for more info. + + +```{julia} +using Random, ReverseDiff + +m_post = m | (y=df.y,) +chn = sample(Xoshiro(123456), m_post, NUTS(;adtype=AutoReverseDiff()), 1_000, progress=false) +``` + +We can use these samples and the `posterior` function from `AbstractGPs` to sample from the +posterior probability of success at any distance we choose: + +```{julia} +d_pred = 1:0.2:21 +samples = map(generated_quantities(m_post, chn)[1:10:end]) do x + return logistic.(rand(posterior(x.fx, x.f_latent)(d_pred, 1e-4))) +end +p = plot() +plot!(d_pred, reduce(hcat, samples); label="", color=:blue, alpha=0.2) +scatter!(df.distance, df.y ./ df.n; label="", color=:red) +``` + +We can see that the general trend is indeed down as the distance from the hole increases, +and that if we move away from the data, the posterior uncertainty quickly inflates. +This suggests that the model is probably going to do a reasonable job of interpolating between observed data, but less good a job at extrapolating to larger distances. \ No newline at end of file diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index e84d6b8e6..4039e97d5 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.0" +julia_version = "1.10.3" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" @@ -383,7 +383,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+1" +version = "1.1.1+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -1238,7 +1238,7 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+2" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/docs-00-getting-started/index.qmd b/tutorials/docs-00-getting-started/index.qmd index c7f2de4e8..3a726782c 100644 --- a/tutorials/docs-00-getting-started/index.qmd +++ b/tutorials/docs-00-getting-started/index.qmd @@ -3,6 +3,13 @@ title: Getting Started engine: julia --- +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + ### Installation To use Turing, you need to install Julia first and then install Turing. diff --git a/tutorials/docs-01-contributing-guide/index.qmd b/tutorials/docs-01-contributing-guide/index.qmd old mode 100644 new mode 100755 index 1ddab05f7..ccc9492c3 --- a/tutorials/docs-01-contributing-guide/index.qmd +++ b/tutorials/docs-01-contributing-guide/index.qmd @@ -1,27 +1,27 @@ ---- -title: Contributing ---- - -Turing is an open source project. If you feel that you have some relevant skills and are interested in contributing, then please do get in touch. You can contribute by opening issues on GitHub or implementing things yourself and making a pull request. We would also appreciate example models written using Turing. - -Turing has a [style guide]({{< meta site-url >}}/dev/docs/contributing/style-guide). It is not strictly necessary to review it before making a pull request, but you may be asked to change portions of your code to conform with the style guide before it is merged. - -## How to Contribute - -### Getting Started - - - [Fork this repository](https://github.com/TuringLang/Turing.jl#fork-destination-box). - - - Clone your fork on your local machine: `git clone https://github.com/your_username/Turing.jl`. - - - Add a remote corresponding to this repository: - -`git remote add upstream https://github.com/TuringLang/Turing.jl`. - -### What Can I Do? - -Look at the [issues](https://github.com/TuringLang/Turing.jl/issues) page to find an outstanding issue. For instance, you could implement new features, fix bugs or write example models. - -### Git Workflow - +--- +title: Contributing +--- + +Turing is an open source project. If you feel that you have some relevant skills and are interested in contributing, then please do get in touch. You can contribute by opening issues on GitHub or implementing things yourself and making a pull request. We would also appreciate example models written using Turing. + +Turing has a [style guide]({{< meta site-url >}}/dev/docs/contributing/style-guide). It is not strictly necessary to review it before making a pull request, but you may be asked to change portions of your code to conform with the style guide before it is merged. + +## How to Contribute + +### Getting Started + + - [Fork this repository](https://github.com/TuringLang/Turing.jl#fork-destination-box). + + - Clone your fork on your local machine: `git clone https://github.com/your_username/Turing.jl`. + + - Add a remote corresponding to this repository: + +`git remote add upstream https://github.com/TuringLang/Turing.jl`. + +### What Can I Do? + +Look at the [issues](https://github.com/TuringLang/Turing.jl/issues) page to find an outstanding issue. For instance, you could implement new features, fix bugs or write example models. + +### Git Workflow + For more information on how the Git workflow typically functions, please see the [GitHub's introduction](https://guides.github.com/introduction/flow/) or [Julia's contribution guide](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md). \ No newline at end of file diff --git a/tutorials/docs-02-contributing-style-guide/index.qmd b/tutorials/docs-02-contributing-style-guide/index.qmd old mode 100644 new mode 100755 index cd031df97..82eba6946 --- a/tutorials/docs-02-contributing-style-guide/index.qmd +++ b/tutorials/docs-02-contributing-style-guide/index.qmd @@ -1,107 +1,107 @@ ---- -title: Style Guide -engine: julia ---- - -Most Turing code follows the [Invenia](https://invenia.ca/labs/)'s style guide. We would like to thank them for allowing us to access and use it. Please don't let not having read it stop you from contributing to Turing! No one will be annoyed if you open a PR with style that doesn't follow these conventions; we will just help you correct it before it gets merged. - -These conventions were originally written at Invenia, taking inspiration from a variety of sources including Python's [PEP8](http://legacy.python.org/dev/peps/pep-0008), Julia's [Notes for Contributors](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md), and Julia's [Style Guide](https://docs.julialang.org/en/v1/manual/style-guide/). - -What follows is a mixture of a verbatim copy of Invenia's original guide and some of our own modifications. - -## A Word on Consistency - -When adhering to this style it's important to realize that these are guidelines and not rules. This is [stated best in the PEP8](http://legacy.python.org/dev/peps/pep-0008/#a-foolish-consistency-is-the-hobgoblin-of-little-minds): - -> A style guide is about consistency. Consistency with this style guide is important. Consistency within a project is more important. Consistency within one module or function is most important. - -> But most importantly: know when to be inconsistent – sometimes the style guide just doesn't apply. When in doubt, use your best judgment. Look at other examples and decide what looks best. And don't hesitate to ask! - -## Synopsis - -Attempt to follow the [Julia Contribution Guidelines](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md#general-formatting-guidelines-for-julia-code-contributions), the [Julia Style Guide](https://docs.julialang.org/en/v1/manual/style-guide/), and this guide. When convention guidelines conflict, this guide takes precedence (known conflicts will be noted in this guide). - - - Use 4 spaces per indentation level, no tabs. - - Try to adhere to a 92 character line length limit. - - Use upper camel case convention for [modules](https://docs.julialang.org/en/v1/manual/modules/) and [types](https://docs.julialang.org/en/v1/manual/types/). - - Use lower case with underscores for method names (note: Julia code likes to use lower case without underscores). - - Comments are good, try to explain the intentions of the code. - - Use whitespace to make the code more readable. - - No whitespace at the end of a line (trailing whitespace). - - Avoid padding brackets with spaces. ex. `Int64(value)` preferred over `Int64( value )`. - -## Editor Configuration - -### Sublime Text Settings - -If you are a user of Sublime Text we recommend that you have the following options in your Julia syntax specific settings. To modify these settings first open any Julia file (`*.jl`) in Sublime Text. Then navigate to: `Preferences > Settings - More > Syntax Specific - User` - -```{json} -{ - "translate_tabs_to_spaces": true, - "tab_size": 4, - "trim_trailing_white_space_on_save": true, - "ensure_newline_at_eof_on_save": true, - "rulers": [92] -} -``` - -### Vim Settings - -If you are a user of Vim we recommend that you add the following options to your `.vimrc` file. - -``` -set tabstop=4 " Sets tabstops to a width of four columns. -set softtabstop=4 " Determines the behaviour of TAB and BACKSPACE keys with expandtab. -set shiftwidth=4 " Determines the results of >>, <<, and ==. - -au FileType julia setlocal expandtab " Replaces tabs with spaces. -au FileType julia setlocal colorcolumn=93 " Highlights column 93 to help maintain the 92 character line limit. -``` - -By default, Vim seems to guess that `.jl` files are written in Lisp. To ensure that Vim recognizes Julia files you can manually have it check for the `.jl` extension, but a better solution is to install [Julia-Vim](https://github.com/JuliaLang/julia-vim), which also includes proper syntax highlighting and a few cool other features. - -## Test Formatting - -### Testsets - -Julia provides [test sets](https://docs.julialang.org/en/v1/stdlib/Test/#Working-with-Test-Sets-1) which allows developers to group tests into logical groupings. Test sets can be nested and ideally packages should only have a single "root" test set. It is recommended that the "runtests.jl" file contains the root test set which contains the remainder of the tests: - -```{julia} -#| eval: false -@testset "PkgExtreme" begin - include("arithmetic.jl") - include("utils.jl") -end -``` - -The file structure of the `test` folder should mirror that of the `src` folder. Every file in `src` should have a complementary file in the `test` folder, containing tests relevant to that file's contents. - -### Comparisons - -Most tests are written in the form `@test x == y`. Since the `==` function doesn't take types into account, tests like the following are valid: `@test 1.0 == 1`. Avoid adding visual noise into test comparisons: - -```{julia} -#| eval: false -# Yes: -@test value == 0 - -# No: -@test value == 0.0 -``` - -In cases where you are checking the numerical validity of a model's parameter estimates, please use the `check_numerical` function found in `test/test_utils/numerical_tests.jl`. This function will evaluate a model's parameter estimates using tolerance levels `atol` and `rtol`. Testing will only be performed if you are running the test suite locally or if Travis is executing the "Numerical" testing stage. - -Here is an example of usage: - -```{julia} -#| eval: false -# Check that m and s are plus or minus one from 1.5 and 2.2, respectively. -check_numerical(chain, [:m, :s], [1.5, 2.2]; atol=1.0) - -# Checks the estimates for a default gdemo model using values 1.5 and 2.0. -check_gdemo(chain; atol=0.1) - -# Checks the estimates for a default MoG model. -check_MoGtest_default(chain; atol=0.1) +--- +title: Style Guide +engine: julia +--- + +Most Turing code follows the [Invenia](https://invenia.ca/labs/)'s style guide. We would like to thank them for allowing us to access and use it. Please don't let not having read it stop you from contributing to Turing! No one will be annoyed if you open a PR with style that doesn't follow these conventions; we will just help you correct it before it gets merged. + +These conventions were originally written at Invenia, taking inspiration from a variety of sources including Python's [PEP8](http://legacy.python.org/dev/peps/pep-0008), Julia's [Notes for Contributors](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md), and Julia's [Style Guide](https://docs.julialang.org/en/v1/manual/style-guide/). + +What follows is a mixture of a verbatim copy of Invenia's original guide and some of our own modifications. + +## A Word on Consistency + +When adhering to this style it's important to realize that these are guidelines and not rules. This is [stated best in the PEP8](http://legacy.python.org/dev/peps/pep-0008/#a-foolish-consistency-is-the-hobgoblin-of-little-minds): + +> A style guide is about consistency. Consistency with this style guide is important. Consistency within a project is more important. Consistency within one module or function is most important. + +> But most importantly: know when to be inconsistent – sometimes the style guide just doesn't apply. When in doubt, use your best judgment. Look at other examples and decide what looks best. And don't hesitate to ask! + +## Synopsis + +Attempt to follow the [Julia Contribution Guidelines](https://github.com/JuliaLang/julia/blob/master/CONTRIBUTING.md#general-formatting-guidelines-for-julia-code-contributions), the [Julia Style Guide](https://docs.julialang.org/en/v1/manual/style-guide/), and this guide. When convention guidelines conflict, this guide takes precedence (known conflicts will be noted in this guide). + + - Use 4 spaces per indentation level, no tabs. + - Try to adhere to a 92 character line length limit. + - Use upper camel case convention for [modules](https://docs.julialang.org/en/v1/manual/modules/) and [types](https://docs.julialang.org/en/v1/manual/types/). + - Use lower case with underscores for method names (note: Julia code likes to use lower case without underscores). + - Comments are good, try to explain the intentions of the code. + - Use whitespace to make the code more readable. + - No whitespace at the end of a line (trailing whitespace). + - Avoid padding brackets with spaces. ex. `Int64(value)` preferred over `Int64( value )`. + +## Editor Configuration + +### Sublime Text Settings + +If you are a user of Sublime Text we recommend that you have the following options in your Julia syntax specific settings. To modify these settings first open any Julia file (`*.jl`) in Sublime Text. Then navigate to: `Preferences > Settings - More > Syntax Specific - User` + +```{json} +{ + "translate_tabs_to_spaces": true, + "tab_size": 4, + "trim_trailing_white_space_on_save": true, + "ensure_newline_at_eof_on_save": true, + "rulers": [92] +} +``` + +### Vim Settings + +If you are a user of Vim we recommend that you add the following options to your `.vimrc` file. + +``` +set tabstop=4 " Sets tabstops to a width of four columns. +set softtabstop=4 " Determines the behaviour of TAB and BACKSPACE keys with expandtab. +set shiftwidth=4 " Determines the results of >>, <<, and ==. + +au FileType julia setlocal expandtab " Replaces tabs with spaces. +au FileType julia setlocal colorcolumn=93 " Highlights column 93 to help maintain the 92 character line limit. +``` + +By default, Vim seems to guess that `.jl` files are written in Lisp. To ensure that Vim recognizes Julia files you can manually have it check for the `.jl` extension, but a better solution is to install [Julia-Vim](https://github.com/JuliaLang/julia-vim), which also includes proper syntax highlighting and a few cool other features. + +## Test Formatting + +### Testsets + +Julia provides [test sets](https://docs.julialang.org/en/v1/stdlib/Test/#Working-with-Test-Sets-1) which allows developers to group tests into logical groupings. Test sets can be nested and ideally packages should only have a single "root" test set. It is recommended that the "runtests.jl" file contains the root test set which contains the remainder of the tests: + +```{julia} +#| eval: false +@testset "PkgExtreme" begin + include("arithmetic.jl") + include("utils.jl") +end +``` + +The file structure of the `test` folder should mirror that of the `src` folder. Every file in `src` should have a complementary file in the `test` folder, containing tests relevant to that file's contents. + +### Comparisons + +Most tests are written in the form `@test x == y`. Since the `==` function doesn't take types into account, tests like the following are valid: `@test 1.0 == 1`. Avoid adding visual noise into test comparisons: + +```{julia} +#| eval: false +# Yes: +@test value == 0 + +# No: +@test value == 0.0 +``` + +In cases where you are checking the numerical validity of a model's parameter estimates, please use the `check_numerical` function found in `test/test_utils/numerical_tests.jl`. This function will evaluate a model's parameter estimates using tolerance levels `atol` and `rtol`. Testing will only be performed if you are running the test suite locally or if Travis is executing the "Numerical" testing stage. + +Here is an example of usage: + +```{julia} +#| eval: false +# Check that m and s are plus or minus one from 1.5 and 2.2, respectively. +check_numerical(chain, [:m, :s], [1.5, 2.2]; atol=1.0) + +# Checks the estimates for a default gdemo model using values 1.5 and 2.0. +check_gdemo(chain; atol=0.1) + +# Checks the estimates for a default MoG model. +check_MoGtest_default(chain; atol=0.1) ``` \ No newline at end of file diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml old mode 100644 new mode 100755 index c78798405..5e83c0a6e --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Project.toml @@ -1,2 +1,2 @@ -[deps] -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/hierarchy.png b/tutorials/docs-04-for-developers-abstractmcmc-turing/hierarchy.png old mode 100644 new mode 100755 diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd old mode 100644 new mode 100755 index c98f35aec..e66d5f7ef --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd @@ -1,296 +1,303 @@ ---- -title: How Turing implements AbstractMCMC -engine: julia ---- - -Prerequisite: [Interface guide](../interface/). - -## Introduction - -Consider the following Turing, code block: - -```{julia} -using Turing - -@model function gdemo(x, y) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - x ~ Normal(m, sqrt(s²)) - return y ~ Normal(m, sqrt(s²)) -end - -mod = gdemo(1.5, 2) -alg = IS() -n_samples = 1000 - -chn = sample(mod, alg, n_samples, progress=false) -``` - -The function `sample` is part of the AbstractMCMC interface. As explained in the [interface guide](https://turinglang.org/dev/docs/for-developers/interface), building a a sampling method that can be used by `sample` consists in overloading the structs and functions in `AbstractMCMC`. The interface guide also gives a standalone example of their implementation, [`AdvancedMH.jl`](). - -Turing sampling methods (most of which are written [here](https://github.com/TuringLang/Turing.jl/tree/master/src/inference)) also implement `AbstractMCMC`. Turing defines a particular architecture for `AbstractMCMC` implementations, that enables working with models defined by the `@model` macro, and uses DynamicPPL as a backend. The goal of this page is to describe this architecture, and how you would go about implementing your own sampling method in Turing, using Importance Sampling as an example. I don't go into all the details: for instance, I don't address selectors or parallelism. - -First, we explain how Importance Sampling works in the abstract. Consider the model defined in the first code block. Mathematically, it can be written: - -```{.cell-bg} -\begin{align*} -s &\sim \text{InverseGamma}(2, 3), \\\\ -m &\sim \text{Normal}(0, \sqrt{s}), \\\\ -x &\sim \text{Normal}(m, \sqrt{s}), \\\\ -y &\sim \text{Normal}(m, \sqrt{s}). -\end{align*} -``` - -The **latent** variables are ``s`` and ``m``, the **observed** variables are ``x`` and ``y``. The model **joint** distribution ``p(s,m,x,y)`` decomposes into the **prior** ``p(s,m)`` and the **likelihood** ``p(x,y \mid s,m).`` Since ``x = 1.5`` and ``y = 2`` are observed, the goal is to infer the **posterior** distribution ``p(s,m \mid x,y).`` - -Importance Sampling produces independent samples ``(s_i, m_i)`` from the prior distribution. It also outputs unnormalized weights - -```{.cell-bg} -w_i = \frac {p(x,y,s_i,m_i)} {p(s_i, m_i)} = p(x,y \mid s_i, m_i) -``` - -such that the empirical distribution - -```{.cell-bg} -\frac{1}{N} \sum_{i =1}^N \frac {w_i} {\sum_{j=1}^N w_j} \delta_{(s_i, m_i)} -``` - -is a good approximation of the posterior. - -## 1. Define a Sampler - -Recall the last line of the above code block: - -```{julia} -chn = sample(mod, alg, n_samples, progress=false) -``` - -Here `sample` takes as arguments a **model** `mod`, an **algorithm** `alg`, and a **number of samples** `n_samples`, and returns an instance `chn` of `Chains` which can be analysed using the functions in `MCMCChains`. - -### Models - -To define a **model**, you declare a joint distribution on variables in the `@model` macro, and specify which variables are observed and which should be inferred, as well as the value of the observed variables. Thus, when implementing Importance Sampling, - -```{julia} -mod = gdemo(1.5, 2) -``` - -creates an instance `mod` of the struct `Model`, which corresponds to the observations of a value of `1.5` for `x`, and a value of `2` for `y`. - -This is all handled by DynamicPPL, more specifically [here](https://github.com/TuringLang/DynamicPPL.jl/blob/master/src/model.jl). I will return to how models are used to inform sampling algorithms [below](#assumeobserve). - -### Algorithms - -An **algorithm** is just a sampling method: in Turing, it is a subtype of the abstract type `InferenceAlgorithm`. Defining an algorithm may require specifying a few high-level parameters. For example, "Hamiltonian Monte-Carlo" may be too vague, but "Hamiltonian Monte Carlo with 10 leapfrog steps per proposal and a stepsize of 0.01" is an algorithm. "Metropolis-Hastings" may be too vague, but "Metropolis-Hastings with proposal distribution `p`" is an algorithm. -Thus - -```{julia} -stepsize = 0.01 -L = 10 -alg = HMC(stepsize, L) -``` - -defines a Hamiltonian Monte-Carlo algorithm, an instance of `HMC`, which is a subtype of `InferenceAlgorithm`. - -In the case of Importance Sampling, there is no need to specify additional parameters: - -```{julia} -alg = IS() -``` - -defines an Importance Sampling algorithm, an instance of `IS` which is a subtype of `InferenceAlgorithm`. - -When creating your own Turing sampling method, you must therefore build a subtype of `InferenceAlgorithm` corresponding to your method. - -### Samplers - -Samplers are **not** the same as algorithms. An algorithm is a generic sampling method, a sampler is an object that stores information about how algorithm and model interact during sampling, and is modified as sampling progresses. The `Sampler` struct is defined in DynamicPPL. - -Turing implements `AbstractMCMC`'s `AbstractSampler` with the `Sampler` struct defined in `DynamicPPL`. The most important attributes of an instance `spl` of `Sampler` are: - -- `spl.alg`: the sampling method used, an instance of a subtype of `InferenceAlgorithm` -- `spl.state`: information about the sampling process, see [below](#states) - -When you call `sample(mod, alg, n_samples)`, Turing first uses `model` and `alg` to build an instance `spl` of `Sampler` , then calls the native `AbstractMCMC` function `sample(mod, spl, n_samples)`. - -When you define your own Turing sampling method, you must therefore build: - -- a **sampler constructor** that uses a model and an algorithm to initialize an instance of `Sampler`. For Importance Sampling: - -```{julia} -#| eval: false -function Sampler(alg::IS, model::Model, s::Selector) - info = Dict{Symbol,Any}() - state = ISState(model) - return Sampler(alg, info, s, state) -end -``` - -- a **state** struct implementing `AbstractSamplerState` corresponding to your method: we cover this in the following paragraph. - -### States - -The `vi` field contains all the important information about sampling: first and foremost, the values of all the samples, but also the distributions from which they are sampled, the names of model parameters, and other metadata. As we will see below, many important steps during sampling correspond to queries or updates to `spl.state.vi`. - -By default, you can use `SamplerState`, a concrete type defined in `inference/Inference.jl`, which extends `AbstractSamplerState` and has no field except for `vi`: - -```{julia} -#| eval: false -mutable struct SamplerState{VIType<:VarInfo} <: AbstractSamplerState - vi::VIType -end -``` - -When doing Importance Sampling, we care not only about the values of the samples but also their weights. We will see below that the weight of each sample is also added to `spl.state.vi`. Moreover, the average - -```{.cell-bg} -\frac 1 N \sum_{j=1}^N w_i = \frac 1 N \sum_{j=1}^N p(x,y \mid s_i, m_i) -``` - -of the sample weights is a particularly important quantity: - -- it is used to **normalize** the **empirical approximation** of the posterior distribution -- its logarithm is the importance sampling **estimate** of the **log evidence** ``\log p(x, y)`` - -To avoid having to compute it over and over again, `is.jl`defines an IS-specific concrete type `ISState` for sampler states, with an additional field `final_logevidence` containing - -```{.cell-bg} -\log \frac 1 N \sum_{j=1}^N w_i. -``` - -```{julia} -#| eval: false -mutable struct ISState{V<:VarInfo,F<:AbstractFloat} <: AbstractSamplerState - vi::V - final_logevidence::F -end - -# additional constructor -ISState(model::Model) = ISState(VarInfo(model), 0.0) -``` - -The following diagram summarizes the hierarchy presented above. - -![](hierarchy.png) - -## 2. Overload the functions used inside mcmcsample - -A lot of the things here are method-specific. However Turing also has some functions that make it easier for you to implement these functions, for examples . - -### Transitions - -`AbstractMCMC` stores information corresponding to each individual sample in objects called `transition`, but does not specify what the structure of these objects could be. You could decide to implement a type `MyTransition` for transitions corresponding to the specifics of your methods. However, there are many situations in which the only information you need for each sample is: - -- its value: ``\theta`` -- log of the joint probability of the observed data and this sample: `lp` - -`Inference.jl` [defines](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/Inference.jl#L103) a struct `Transition`, which corresponds to this default situation - -```{julia} -#| eval: false -struct Transition{T,F<:AbstractFloat} - θ::T - lp::F -end -``` - -It also [contains](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/Inference.jl#L108) a constructor that builds an instance of `Transition` from an instance `spl` of `Sampler`: ``\theta`` is `spl.state.vi` converted to a `namedtuple`, and `lp` is `getlogp(spl.state.vi)`. `is.jl` uses this default constructor at the end of the `step!` function [here](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/is.jl#L58). - -### How `sample` works - -A crude summary, which ignores things like parallelism, is the following: - -`sample` calls `mcmcsample`, which calls - -- `sample_init!` to set things up -- `step!` repeatedly to produce multiple new transitions -- `sample_end!` to perform operations once all samples have been obtained -- `bundle_samples` to convert a vector of transitions into a more palatable type, for instance a `Chain`. - -You can of course implement all of these functions, but `AbstractMCMC` as well as Turing also provide default implementations for simple cases. For instance, importance sampling uses the default implementations of `sample_init!` and `bundle_samples`, which is why you don't see code for them inside `is.jl`. - -## 3. Overload assume and observe - -The functions mentioned above, such as `sample_init!`, `step!`, etc., must of course use information about the model in order to generate samples! In particular, these functions may need **samples from distributions** defined in the model, or to **evaluate the density of these distributions** at some values of the corresponding parameters or observations. - -For an example of the former, consider **Importance Sampling** as defined in `is.jl`. This implementation of Importance Sampling uses the model prior distribution as a proposal distribution, and therefore requires **samples from the prior distribution** of the model. Another example is **Approximate Bayesian Computation**, which requires multiple **samples from the model prior and likelihood distributions** in order to generate a single sample. - -An example of the latter is the **Metropolis-Hastings** algorithm. At every step of sampling from a target posterior - -```{.cell-bg} -p(\theta \mid x_{\text{obs}}), -``` - -in order to compute the acceptance ratio, you need to **evaluate the model joint density** - -```{.cell-bg} -p\left(\theta_{\text{prop}}, x_{\text{obs}}\right) -``` - -with ``\theta_{\text{prop}}`` a sample from the proposal and ``x_{\text{obs}}`` the observed data. - -This begs the question: how can these functions access model information during sampling? Recall that the model is stored as an instance `m` of `Model`. One of the attributes of `m` is the model evaluation function `m.f`, which is built by compiling the `@model` macro. Executing `f` runs the tilde statements of the model in order, and adds model information to the sampler (the instance of `Sampler` that stores information about the ongoing sampling process) at each step (see [here](https://turinglang.org/dev/docs/for-developers/compiler) for more information about how the `@model` macro is compiled). The DynamicPPL functions `assume` and `observe` determine what kind of information to add to the sampler for every tilde statement. - -Consider an instance `m` of `Model` and a sampler `spl`, with associated `VarInfo` `vi = spl.state.vi`. At some point during the sampling process, an AbstractMCMC function such as `step!` calls `m(vi, ...)`, which calls the model evaluation function `m.f(vi, ...)`. - - - for every tilde statement in the `@model` macro, `m.f(vi, ...)` returns model-related information (samples, value of the model density, etc.), and adds it to `vi`. How does it do that? - - + recall that the code for `m.f(vi, ...)` is automatically generated by compilation of the `@model` macro - - + for every tilde statement in the `@model` declaration, this code contains a call to `assume(vi, ...)` if the variable on the LHS of the tilde is a **model parameter to infer**, and `observe(vi, ...)` if the variable on the LHS of the tilde is an **observation** - - + in the file corresponding to your sampling method (ie in `Turing.jl/src/inference/.jl`), you have **overloaded** `assume` and `observe`, so that they can modify `vi` to include the information and samples that you care about! - - + at a minimum, `assume` and `observe` return the log density `lp` of the sample or observation. the model evaluation function then immediately calls `acclogp!!(vi, lp)`, which adds `lp` to the value of the log joint density stored in `vi`. - -Here's what `assume` looks like for Importance Sampling: - -```{julia} -#| eval: false -function DynamicPPL.assume(rng, spl::Sampler{<:IS}, dist::Distribution, vn::VarName, vi) - r = rand(rng, dist) - push!(vi, vn, r, dist, spl) - return r, 0 -end -``` - -The function first generates a sample `r` from the distribution `dist` (the right hand side of the tilde statement). It then adds `r` to `vi`, and returns `r` and 0. - -The `observe` function is even simpler: - -```{julia} -#| eval: false -function DynamicPPL.observe(spl::Sampler{<:IS}, dist::Distribution, value, vi) - return logpdf(dist, value) -end -``` - -It simply returns the density (in the discrete case, the probability) of the observed value under the distribution `dist`. - -## 4. Summary: Importance Sampling step by step - -We focus on the AbstractMCMC functions that are overridden in `is.jl` and executed inside `mcmcsample`: `step!`, which is called `n_samples` times, and `sample_end!`, which is executed once after those `n_samples` iterations. - - - During the ``i``-th iteration, `step!` does 3 things: - - + `empty!!(spl.state.vi)`: remove information about the previous sample from the sampler's `VarInfo` - - + `model(rng, spl.state.vi, spl)`: call the model evaluation function - - * calls to `assume` add the samples from the prior ``s_i`` and ``m_i`` to `spl.state.vi` - - * calls to both `assume` or `observe` are followed by the line `acclogp!!(vi, lp)`, where `lp` is an output of `assume` and `observe` - - * `lp` is set to 0 after `assume`, and to the value of the density at the observation after `observe` - - * when all the tilde statements have been covered, `spl.state.vi.logp[]` is the sum of the `lp`, i.e., the likelihood ``\log p(x, y \mid s_i, m_i) = \log p(x \mid s_i, m_i) + \log p(y \mid s_i, m_i)`` of the observations given the latent variable samples ``s_i`` and ``m_i``. - - + `return Transition(spl)`: build a transition from the sampler, and return that transition - - * the transition's `vi` field is simply `spl.state.vi` - - * the `lp` field contains the likelihood `spl.state.vi.logp[]` - - - When the, `n_samples` iterations are completed, `sample_end!` fills the `final_logevidence` field of `spl.state` - +--- +title: How Turing implements AbstractMCMC +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +Prerequisite: [Interface guide](../interface/). + +## Introduction + +Consider the following Turing, code block: + +```{julia} +using Turing + +@model function gdemo(x, y) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + x ~ Normal(m, sqrt(s²)) + return y ~ Normal(m, sqrt(s²)) +end + +mod = gdemo(1.5, 2) +alg = IS() +n_samples = 1000 + +chn = sample(mod, alg, n_samples, progress=false) +``` + +The function `sample` is part of the AbstractMCMC interface. As explained in the [interface guide](https://turinglang.org/dev/docs/for-developers/interface), building a a sampling method that can be used by `sample` consists in overloading the structs and functions in `AbstractMCMC`. The interface guide also gives a standalone example of their implementation, [`AdvancedMH.jl`](). + +Turing sampling methods (most of which are written [here](https://github.com/TuringLang/Turing.jl/tree/master/src/inference)) also implement `AbstractMCMC`. Turing defines a particular architecture for `AbstractMCMC` implementations, that enables working with models defined by the `@model` macro, and uses DynamicPPL as a backend. The goal of this page is to describe this architecture, and how you would go about implementing your own sampling method in Turing, using Importance Sampling as an example. I don't go into all the details: for instance, I don't address selectors or parallelism. + +First, we explain how Importance Sampling works in the abstract. Consider the model defined in the first code block. Mathematically, it can be written: + +```{.cell-bg} +\begin{align*} +s &\sim \text{InverseGamma}(2, 3), \\\\ +m &\sim \text{Normal}(0, \sqrt{s}), \\\\ +x &\sim \text{Normal}(m, \sqrt{s}), \\\\ +y &\sim \text{Normal}(m, \sqrt{s}). +\end{align*} +``` + +The **latent** variables are ``s`` and ``m``, the **observed** variables are ``x`` and ``y``. The model **joint** distribution ``p(s,m,x,y)`` decomposes into the **prior** ``p(s,m)`` and the **likelihood** ``p(x,y \mid s,m).`` Since ``x = 1.5`` and ``y = 2`` are observed, the goal is to infer the **posterior** distribution ``p(s,m \mid x,y).`` + +Importance Sampling produces independent samples ``(s_i, m_i)`` from the prior distribution. It also outputs unnormalized weights + +```{.cell-bg} +w_i = \frac {p(x,y,s_i,m_i)} {p(s_i, m_i)} = p(x,y \mid s_i, m_i) +``` + +such that the empirical distribution + +```{.cell-bg} +\frac{1}{N} \sum_{i =1}^N \frac {w_i} {\sum_{j=1}^N w_j} \delta_{(s_i, m_i)} +``` + +is a good approximation of the posterior. + +## 1. Define a Sampler + +Recall the last line of the above code block: + +```{julia} +chn = sample(mod, alg, n_samples, progress=false) +``` + +Here `sample` takes as arguments a **model** `mod`, an **algorithm** `alg`, and a **number of samples** `n_samples`, and returns an instance `chn` of `Chains` which can be analysed using the functions in `MCMCChains`. + +### Models + +To define a **model**, you declare a joint distribution on variables in the `@model` macro, and specify which variables are observed and which should be inferred, as well as the value of the observed variables. Thus, when implementing Importance Sampling, + +```{julia} +mod = gdemo(1.5, 2) +``` + +creates an instance `mod` of the struct `Model`, which corresponds to the observations of a value of `1.5` for `x`, and a value of `2` for `y`. + +This is all handled by DynamicPPL, more specifically [here](https://github.com/TuringLang/DynamicPPL.jl/blob/master/src/model.jl). I will return to how models are used to inform sampling algorithms [below](#assumeobserve). + +### Algorithms + +An **algorithm** is just a sampling method: in Turing, it is a subtype of the abstract type `InferenceAlgorithm`. Defining an algorithm may require specifying a few high-level parameters. For example, "Hamiltonian Monte-Carlo" may be too vague, but "Hamiltonian Monte Carlo with 10 leapfrog steps per proposal and a stepsize of 0.01" is an algorithm. "Metropolis-Hastings" may be too vague, but "Metropolis-Hastings with proposal distribution `p`" is an algorithm. +Thus + +```{julia} +stepsize = 0.01 +L = 10 +alg = HMC(stepsize, L) +``` + +defines a Hamiltonian Monte-Carlo algorithm, an instance of `HMC`, which is a subtype of `InferenceAlgorithm`. + +In the case of Importance Sampling, there is no need to specify additional parameters: + +```{julia} +alg = IS() +``` + +defines an Importance Sampling algorithm, an instance of `IS` which is a subtype of `InferenceAlgorithm`. + +When creating your own Turing sampling method, you must therefore build a subtype of `InferenceAlgorithm` corresponding to your method. + +### Samplers + +Samplers are **not** the same as algorithms. An algorithm is a generic sampling method, a sampler is an object that stores information about how algorithm and model interact during sampling, and is modified as sampling progresses. The `Sampler` struct is defined in DynamicPPL. + +Turing implements `AbstractMCMC`'s `AbstractSampler` with the `Sampler` struct defined in `DynamicPPL`. The most important attributes of an instance `spl` of `Sampler` are: + +- `spl.alg`: the sampling method used, an instance of a subtype of `InferenceAlgorithm` +- `spl.state`: information about the sampling process, see [below](#states) + +When you call `sample(mod, alg, n_samples)`, Turing first uses `model` and `alg` to build an instance `spl` of `Sampler` , then calls the native `AbstractMCMC` function `sample(mod, spl, n_samples)`. + +When you define your own Turing sampling method, you must therefore build: + +- a **sampler constructor** that uses a model and an algorithm to initialize an instance of `Sampler`. For Importance Sampling: + +```{julia} +#| eval: false +function Sampler(alg::IS, model::Model, s::Selector) + info = Dict{Symbol,Any}() + state = ISState(model) + return Sampler(alg, info, s, state) +end +``` + +- a **state** struct implementing `AbstractSamplerState` corresponding to your method: we cover this in the following paragraph. + +### States + +The `vi` field contains all the important information about sampling: first and foremost, the values of all the samples, but also the distributions from which they are sampled, the names of model parameters, and other metadata. As we will see below, many important steps during sampling correspond to queries or updates to `spl.state.vi`. + +By default, you can use `SamplerState`, a concrete type defined in `inference/Inference.jl`, which extends `AbstractSamplerState` and has no field except for `vi`: + +```{julia} +#| eval: false +mutable struct SamplerState{VIType<:VarInfo} <: AbstractSamplerState + vi::VIType +end +``` + +When doing Importance Sampling, we care not only about the values of the samples but also their weights. We will see below that the weight of each sample is also added to `spl.state.vi`. Moreover, the average + +```{.cell-bg} +\frac 1 N \sum_{j=1}^N w_i = \frac 1 N \sum_{j=1}^N p(x,y \mid s_i, m_i) +``` + +of the sample weights is a particularly important quantity: + +- it is used to **normalize** the **empirical approximation** of the posterior distribution +- its logarithm is the importance sampling **estimate** of the **log evidence** ``\log p(x, y)`` + +To avoid having to compute it over and over again, `is.jl`defines an IS-specific concrete type `ISState` for sampler states, with an additional field `final_logevidence` containing + +```{.cell-bg} +\log \frac 1 N \sum_{j=1}^N w_i. +``` + +```{julia} +#| eval: false +mutable struct ISState{V<:VarInfo,F<:AbstractFloat} <: AbstractSamplerState + vi::V + final_logevidence::F +end + +# additional constructor +ISState(model::Model) = ISState(VarInfo(model), 0.0) +``` + +The following diagram summarizes the hierarchy presented above. + +![](hierarchy.png) + +## 2. Overload the functions used inside mcmcsample + +A lot of the things here are method-specific. However Turing also has some functions that make it easier for you to implement these functions, for examples . + +### Transitions + +`AbstractMCMC` stores information corresponding to each individual sample in objects called `transition`, but does not specify what the structure of these objects could be. You could decide to implement a type `MyTransition` for transitions corresponding to the specifics of your methods. However, there are many situations in which the only information you need for each sample is: + +- its value: ``\theta`` +- log of the joint probability of the observed data and this sample: `lp` + +`Inference.jl` [defines](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/Inference.jl#L103) a struct `Transition`, which corresponds to this default situation + +```{julia} +#| eval: false +struct Transition{T,F<:AbstractFloat} + θ::T + lp::F +end +``` + +It also [contains](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/Inference.jl#L108) a constructor that builds an instance of `Transition` from an instance `spl` of `Sampler`: ``\theta`` is `spl.state.vi` converted to a `namedtuple`, and `lp` is `getlogp(spl.state.vi)`. `is.jl` uses this default constructor at the end of the `step!` function [here](https://github.com/TuringLang/Turing.jl/blob/master/src/inference/is.jl#L58). + +### How `sample` works + +A crude summary, which ignores things like parallelism, is the following: + +`sample` calls `mcmcsample`, which calls + +- `sample_init!` to set things up +- `step!` repeatedly to produce multiple new transitions +- `sample_end!` to perform operations once all samples have been obtained +- `bundle_samples` to convert a vector of transitions into a more palatable type, for instance a `Chain`. + +You can of course implement all of these functions, but `AbstractMCMC` as well as Turing also provide default implementations for simple cases. For instance, importance sampling uses the default implementations of `sample_init!` and `bundle_samples`, which is why you don't see code for them inside `is.jl`. + +## 3. Overload assume and observe + +The functions mentioned above, such as `sample_init!`, `step!`, etc., must of course use information about the model in order to generate samples! In particular, these functions may need **samples from distributions** defined in the model, or to **evaluate the density of these distributions** at some values of the corresponding parameters or observations. + +For an example of the former, consider **Importance Sampling** as defined in `is.jl`. This implementation of Importance Sampling uses the model prior distribution as a proposal distribution, and therefore requires **samples from the prior distribution** of the model. Another example is **Approximate Bayesian Computation**, which requires multiple **samples from the model prior and likelihood distributions** in order to generate a single sample. + +An example of the latter is the **Metropolis-Hastings** algorithm. At every step of sampling from a target posterior + +```{.cell-bg} +p(\theta \mid x_{\text{obs}}), +``` + +in order to compute the acceptance ratio, you need to **evaluate the model joint density** + +```{.cell-bg} +p\left(\theta_{\text{prop}}, x_{\text{obs}}\right) +``` + +with ``\theta_{\text{prop}}`` a sample from the proposal and ``x_{\text{obs}}`` the observed data. + +This begs the question: how can these functions access model information during sampling? Recall that the model is stored as an instance `m` of `Model`. One of the attributes of `m` is the model evaluation function `m.f`, which is built by compiling the `@model` macro. Executing `f` runs the tilde statements of the model in order, and adds model information to the sampler (the instance of `Sampler` that stores information about the ongoing sampling process) at each step (see [here](https://turinglang.org/dev/docs/for-developers/compiler) for more information about how the `@model` macro is compiled). The DynamicPPL functions `assume` and `observe` determine what kind of information to add to the sampler for every tilde statement. + +Consider an instance `m` of `Model` and a sampler `spl`, with associated `VarInfo` `vi = spl.state.vi`. At some point during the sampling process, an AbstractMCMC function such as `step!` calls `m(vi, ...)`, which calls the model evaluation function `m.f(vi, ...)`. + + - for every tilde statement in the `@model` macro, `m.f(vi, ...)` returns model-related information (samples, value of the model density, etc.), and adds it to `vi`. How does it do that? + + + recall that the code for `m.f(vi, ...)` is automatically generated by compilation of the `@model` macro + + + for every tilde statement in the `@model` declaration, this code contains a call to `assume(vi, ...)` if the variable on the LHS of the tilde is a **model parameter to infer**, and `observe(vi, ...)` if the variable on the LHS of the tilde is an **observation** + + + in the file corresponding to your sampling method (ie in `Turing.jl/src/inference/.jl`), you have **overloaded** `assume` and `observe`, so that they can modify `vi` to include the information and samples that you care about! + + + at a minimum, `assume` and `observe` return the log density `lp` of the sample or observation. the model evaluation function then immediately calls `acclogp!!(vi, lp)`, which adds `lp` to the value of the log joint density stored in `vi`. + +Here's what `assume` looks like for Importance Sampling: + +```{julia} +#| eval: false +function DynamicPPL.assume(rng, spl::Sampler{<:IS}, dist::Distribution, vn::VarName, vi) + r = rand(rng, dist) + push!(vi, vn, r, dist, spl) + return r, 0 +end +``` + +The function first generates a sample `r` from the distribution `dist` (the right hand side of the tilde statement). It then adds `r` to `vi`, and returns `r` and 0. + +The `observe` function is even simpler: + +```{julia} +#| eval: false +function DynamicPPL.observe(spl::Sampler{<:IS}, dist::Distribution, value, vi) + return logpdf(dist, value) +end +``` + +It simply returns the density (in the discrete case, the probability) of the observed value under the distribution `dist`. + +## 4. Summary: Importance Sampling step by step + +We focus on the AbstractMCMC functions that are overridden in `is.jl` and executed inside `mcmcsample`: `step!`, which is called `n_samples` times, and `sample_end!`, which is executed once after those `n_samples` iterations. + + - During the ``i``-th iteration, `step!` does 3 things: + + + `empty!!(spl.state.vi)`: remove information about the previous sample from the sampler's `VarInfo` + + + `model(rng, spl.state.vi, spl)`: call the model evaluation function + + * calls to `assume` add the samples from the prior ``s_i`` and ``m_i`` to `spl.state.vi` + + * calls to both `assume` or `observe` are followed by the line `acclogp!!(vi, lp)`, where `lp` is an output of `assume` and `observe` + + * `lp` is set to 0 after `assume`, and to the value of the density at the observation after `observe` + + * when all the tilde statements have been covered, `spl.state.vi.logp[]` is the sum of the `lp`, i.e., the likelihood ``\log p(x, y \mid s_i, m_i) = \log p(x \mid s_i, m_i) + \log p(y \mid s_i, m_i)`` of the observations given the latent variable samples ``s_i`` and ``m_i``. + + + `return Transition(spl)`: build a transition from the sampler, and return that transition + + * the transition's `vi` field is simply `spl.state.vi` + + * the `lp` field contains the likelihood `spl.state.vi.logp[]` + + - When the, `n_samples` iterations are completed, `sample_end!` fills the `final_logevidence` field of `spl.state` + + it simply takes the logarithm of the average of the sample weights, using the log weights for numerical stability \ No newline at end of file diff --git a/tutorials/docs-05-for-developers-compiler/index.qmd b/tutorials/docs-05-for-developers-compiler/index.qmd old mode 100644 new mode 100755 index b5314ea5a..fcd7c35d9 --- a/tutorials/docs-05-for-developers-compiler/index.qmd +++ b/tutorials/docs-05-for-developers-compiler/index.qmd @@ -1,296 +1,303 @@ ---- -title: Turing Compiler Design -engine: julia ---- - -In this section, the current design of Turing's model "compiler" is described which enables Turing to perform various types of Bayesian inference without changing the model definition. The "compiler" is essentially just a macro that rewrites the user's model definition to a function that generates a `Model` struct that Julia's dispatch can operate on and that Julia's compiler can successfully do type inference on for efficient machine code generation. - -# Overview - -The following terminology will be used in this section: - - - `D`: observed data variables conditioned upon in the posterior, - - `P`: parameter variables distributed according to the prior distributions, these will also be referred to as random variables, - - `Model`: a fully defined probabilistic model with input data - -`Turing`'s `@model` macro rewrites the user-provided function definition such that it can be used to instantiate a `Model` by passing in the observed data `D`. - -The following are the main jobs of the `@model` macro: - - 1. Parse `~` and `.~` lines, e.g. `y .~ Normal.(c*x, 1.0)` - 2. Figure out if a variable belongs to the data `D` and or to the parameters `P` - 3. Enable the handling of missing data variables in `D` when defining a `Model` and treating them as parameter variables in `P` instead - 4. Enable the tracking of random variables using the data structures `VarName` and `VarInfo` - 5. Change `~`/`.~` lines with a variable in `P` on the LHS to a call to `tilde_assume` or `dot_tilde_assume` - 6. Change `~`/`.~` lines with a variable in `D` on the LHS to a call to `tilde_observe` or `dot_tilde_observe` - 7. Enable type stable automatic differentiation of the model using type parameters - -## The model - -A `model::Model` is a callable struct that one can sample from by calling - -```{julia} -#| eval: false -(model::Model)([rng, varinfo, sampler, context]) -``` - -where `rng` is a random number generator (default: `Random.default_rng()`), `varinfo` is a data structure that stores information -about the random variables (default: `DynamicPPL.VarInfo()`), `sampler` is a sampling algorithm (default: `DynamicPPL.SampleFromPrior()`), -and `context` is a sampling context that can, e.g., modify how the log probability is accumulated (default: `DynamicPPL.DefaultContext()`). - -Sampling resets the log joint probability of `varinfo` and increases the evaluation counter of `sampler`. If `context` is a `LikelihoodContext`, -only the log likelihood will be accumulated. With the `DefaultContext` the log joint probability of `P` and `D` is accumulated. - -The `Model` struct contains the three internal fields `f`, `args` and `defaults`. -When `model::Model` is called, then the internal function `model.f` is called as `model.f(rng, varinfo, sampler, context, model.args...)` -(for multithreaded sampling, instead of `varinfo` a threadsafe wrapper is passed to `model.f`). -The positional and keyword arguments that were passed to the user-defined model function when the model was created are saved as a `NamedTuple` -in `model.args`. The default values of the positional and keyword arguments of the user-defined model functions, if any, are saved as a `NamedTuple` -in `model.defaults`. They are used for constructing model instances with different arguments by the `logprob` and `prob` string macros. - -# Example - -Let's take the following model as an example: - -```{julia} -#| eval: false -@model function gauss( - x=missing, y=1.0, ::Type{TV}=Vector{Float64} -) where {TV<:AbstractVector} - if x === missing - x = TV(undef, 3) - end - p = TV(undef, 2) - p[1] ~ InverseGamma(2, 3) - p[2] ~ Normal(0, 1.0) - @. x[1:2] ~ Normal(p[2], sqrt(p[1])) - x[3] ~ Normal() - return y ~ Normal(p[2], sqrt(p[1])) -end -``` - -The above call of the `@model` macro defines the function `gauss` with positional arguments `x`, `y`, and `::Type{TV}`, rewritten in -such a way that every call of it returns a `model::Model`. Note that only the function body is modified by the `@model` macro, and the -function signature is left untouched. It is also possible to implement models with keyword arguments such as - -```{julia} -#| eval: false -@model function gauss( - ::Type{TV}=Vector{Float64}; x=missing, y=1.0 -) where {TV<:AbstractVector} - return ... -end -``` - -This would allow us to generate a model by calling `gauss(; x = rand(3))`. - -If an argument has a default value `missing`, it is treated as a random variable. For variables which require an initialization because we -need to loop or broadcast over its elements, such as `x` above, the following needs to be done: - -```{julia} -#| eval: false -if x === missing - x = ... -end -``` - -Note that since `gauss` behaves like a regular function it is possible to define additional dispatches in a second step as well. For -instance, we could achieve the same behaviour by - -```{julia} -#| eval: false -@model function gauss(x, y=1.0, ::Type{TV}=Vector{Float64}) where {TV<:AbstractVector} - p = TV(undef, 2) - return ... -end - -function gauss(::Missing, y=1.0, ::Type{TV}=Vector{Float64}) where {TV<:AbstractVector} - return gauss(TV(undef, 3), y, TV) -end -``` - -If `x` is sampled as a whole from a distribution and not indexed, e.g., `x ~ Normal(...)` or `x ~ MvNormal(...)`, -there is no need to initialize it in an `if`-block. - -## Step 1: Break up the model definition - -First, the `@model` macro breaks up the user-provided function definition using `DynamicPPL.build_model_info`. This function -returns a dictionary consisting of: - - - `allargs_exprs`: The expressions of the positional and keyword arguments, without default values. - - `allargs_syms`: The names of the positional and keyword arguments, e.g., `[:x, :y, :TV]` above. - - `allargs_namedtuple`: An expression that constructs a `NamedTuple` of the positional and keyword arguments, e.g., `:((x = x, y = y, TV = TV))` above. - - `defaults_namedtuple`: An expression that constructs a `NamedTuple` of the default positional and keyword arguments, if any, e.g., `:((x = missing, y = 1, TV = Vector{Float64}))` above. - - `modeldef`: A dictionary with the name, arguments, and function body of the model definition, as returned by `MacroTools.splitdef`. - -## Step 2: Generate the body of the internal model function - -In a second step, `DynamicPPL.generate_mainbody` generates the main part of the transformed function body using the user-provided function body -and the provided function arguments, without default values, for figuring out if a variable denotes an observation or a random variable. -Hereby the function `DynamicPPL.generate_tilde` replaces the `L ~ R` lines in the model and the function `DynamicPPL.generate_dot_tilde` replaces -the `@. L ~ R` and `L .~ R` lines in the model. - -In the above example, `p[1] ~ InverseGamma(2, 3)` is replaced with something similar to - -```{julia} -#| eval: false -#= REPL[25]:6 =# -begin - var"##tmpright#323" = InverseGamma(2, 3) - var"##tmpright#323" isa Union{Distribution,AbstractVector{<:Distribution}} || throw( - ArgumentError( - "Right-hand side of a ~ must be subtype of Distribution or a vector of Distributions.", - ), - ) - var"##vn#325" = (DynamicPPL.VarName)(:p, ((1,),)) - var"##inds#326" = ((1,),) - p[1] = (DynamicPPL.tilde_assume)( - _rng, - _context, - _sampler, - var"##tmpright#323", - var"##vn#325", - var"##inds#326", - _varinfo, - ) -end -``` - -Here the first line is a so-called line number node that enables more helpful error messages by providing users with the exact location -of the error in their model definition. Then the right hand side (RHS) of the `~` is assigned to a variable (with an automatically generated name). -We check that the RHS is a distribution or an array of distributions, otherwise an error is thrown. -Next we extract a compact representation of the variable with its name and index (or indices). Finally, the `~` expression is replaced with -a call to `DynamicPPL.tilde_assume` since the compiler figured out that `p[1]` is a random variable using the following -heuristic: - - 1. If the symbol on the LHS of `~`, `:p` in this case, is not among the arguments to the model, `(:x, :y, :T)` in this case, it is a random variable. - 2. If the symbol on the LHS of `~`, `:p` in this case, is among the arguments to the model but has a value of `missing`, it is a random variable. - 3. If the value of the LHS of `~`, `p[1]` in this case, is `missing`, then it is a random variable. - 4. Otherwise, it is treated as an observation. - -The `DynamicPPL.tilde_assume` function takes care of sampling the random variable, if needed, and updating its value and the accumulated log joint -probability in the `_varinfo` object. If `L ~ R` is an observation, `DynamicPPL.tilde_observe` is called with the same arguments except the -random number generator `_rng` (since observations are never sampled). - -A similar transformation is performed for expressions of the form `@. L ~ R` and `L .~ R`. For instance, -`@. x[1:2] ~ Normal(p[2], sqrt(p[1]))` is replaced with - -```{julia} -#| eval: false -#= REPL[25]:8 =# -begin - var"##tmpright#331" = Normal.(p[2], sqrt.(p[1])) - var"##tmpright#331" isa Union{Distribution,AbstractVector{<:Distribution}} || throw( - ArgumentError( - "Right-hand side of a ~ must be subtype of Distribution or a vector of Distributions.", - ), - ) - var"##vn#333" = (DynamicPPL.VarName)(:x, ((1:2,),)) - var"##inds#334" = ((1:2,),) - var"##isassumption#335" = begin - let var"##vn#336" = (DynamicPPL.VarName)(:x, ((1:2,),)) - if !((DynamicPPL.inargnames)(var"##vn#336", _model)) || - (DynamicPPL.inmissings)(var"##vn#336", _model) - true - else - x[1:2] === missing - end - end - end - if var"##isassumption#335" - x[1:2] .= (DynamicPPL.dot_tilde_assume)( - _rng, - _context, - _sampler, - var"##tmpright#331", - x[1:2], - var"##vn#333", - var"##inds#334", - _varinfo, - ) - else - (DynamicPPL.dot_tilde_observe)( - _context, - _sampler, - var"##tmpright#331", - x[1:2], - var"##vn#333", - var"##inds#334", - _varinfo, - ) - end -end -``` - -The main difference in the expanded code between `L ~ R` and `@. L ~ R` is that the former doesn't assume `L` to be defined, it can be a new Julia variable in the scope, while the latter assumes `L` already exists. Moreover, `DynamicPPL.dot_tilde_assume` and `DynamicPPL.dot_tilde_observe` are called -instead of `DynamicPPL.tilde_assume` and `DynamicPPL.tilde_observe`. - -## Step 3: Replace the user-provided function body - -Finally, we replace the user-provided function body using `DynamicPPL.build_output`. This function uses `MacroTools.combinedef` to reassemble -the user-provided function with a new function body. In the modified function body an anonymous function is created whose function body -was generated in step 2 above and whose arguments are - - - a random number generator `_rng`, - - a model `_model`, - - a datastructure `_varinfo`, - - a sampler `_sampler`, - - a sampling context `_context`, - - and all positional and keyword arguments of the user-provided model function as positional arguments - without any default values. Finally, in the new function body a `model::Model` with this anonymous function as internal function is returned. - -# `VarName` - -In order to track random variables in the sampling process, `Turing` uses the `VarName` struct which acts as a random variable identifier generated at runtime. The `VarName` of a random variable is generated from the expression on the LHS of a `~` statement when the symbol on the LHS is in the set `P` of unobserved random variables. Every `VarName` instance has a type parameter `sym` which is the symbol of the Julia variable in the model that the random variable belongs to. For example, `x[1] ~ Normal()` will generate an instance of `VarName{:x}` assuming `x` is an unobserved random variable. Every `VarName` also has a field `indexing`, which stores the indices required to access the random variable from the Julia variable indicated by `sym` as a tuple of tuples. Each element of the tuple thereby contains the indices of one indexing operation (`VarName` also supports hierarchical arrays and range indexing). Some examples: - - - `x ~ Normal()` will generate a `VarName(:x, ())`. - - `x[1] ~ Normal()` will generate a `VarName(:x, ((1,),))`. - - `x[:,1] ~ MvNormal(zeros(2), I)` will generate a `VarName(:x, ((Colon(), 1),))`. - - `x[:,1][1+1] ~ Normal()` will generate a `VarName(:x, ((Colon(), 1), (2,)))`. - -The easiest way to manually construct a `VarName` is to use the `@varname` macro on an indexing expression, which will take the `sym` value from the actual variable name, and put the index values appropriately into the constructor. - -# `VarInfo` - -## Overview - -`VarInfo` is the data structure in `Turing` that facilitates tracking random variables and certain metadata about them that are required for sampling. For instance, the distribution of every random variable is stored in `VarInfo` because we need to know the support of every random variable when sampling using HMC for example. Random variables whose distributions have a constrained support are transformed using a bijector from [Bijectors.jl](https://github.com/TuringLang/Bijectors.jl) so that the sampling happens in the unconstrained space. Different samplers require different metadata about the random variables. - -The definition of `VarInfo` in `Turing` is: - -```{julia} -#| eval: false -struct VarInfo{Tmeta, Tlogp} <: AbstractVarInfo - metadata::Tmeta - logp::Base.RefValue{Tlogp} - num_produce::Base.RefValue{Int} -end -``` - -Based on the type of `metadata`, the `VarInfo` is either aliased `UntypedVarInfo` or `TypedVarInfo`. `metadata` can be either a subtype of the union type `Metadata` or a `NamedTuple` of multiple such subtypes. Let `vi` be an instance of `VarInfo`. If `vi isa VarInfo{<:Metadata}`, then it is called an `UntypedVarInfo`. If `vi isa VarInfo{<:NamedTuple}`, then `vi.metadata` would be a `NamedTuple` mapping each symbol in `P` to an instance of `Metadata`. `vi` would then be called a `TypedVarInfo`. The other fields of `VarInfo` include `logp` which is used to accumulate the log probability or log probability density of the variables in `P` and `D`. `num_produce` keeps track of how many observations have been made in the model so far. This is incremented when running a `~` statement when the symbol on the LHS is in `D`. - -## `Metadata` - -The `Metadata` struct stores some metadata about the random variables sampled. This helps -query certain information about a variable such as: its distribution, which samplers -sample this variable, its value and whether this value is transformed to real space or -not. Let `md` be an instance of `Metadata`: - - - `md.vns` is the vector of all `VarName` instances. Let `vn` be an arbitrary element of `md.vns` - - `md.idcs` is the dictionary that maps each `VarName` instance to its index in - `md.vns`, `md.ranges`, `md.dists`, `md.orders` and `md.flags`. - - `md.vns[md.idcs[vn]] == vn`. - - `md.dists[md.idcs[vn]]` is the distribution of `vn`. - - `md.gids[md.idcs[vn]]` is the set of algorithms used to sample `vn`. This is used in - the Gibbs sampling process. - - `md.orders[md.idcs[vn]]` is the number of `observe` statements before `vn` is sampled. - - `md.ranges[md.idcs[vn]]` is the index range of `vn` in `md.vals`. - - `md.vals[md.ranges[md.idcs[vn]]]` is the linearized vector of values of corresponding to `vn`. - - `md.flags` is a dictionary of true/false flags. `md.flags[flag][md.idcs[vn]]` is the - value of `flag` corresponding to `vn`. - -Note that in order to make `md::Metadata` type stable, all the `md.vns` must have the same symbol and distribution type. However, one can have a single Julia variable, e.g. `x`, that is a matrix or a hierarchical array sampled in partitions, e.g. `x[1][:] ~ MvNormal(zeros(2), I); x[2][:] ~ MvNormal(ones(2), I)`. The symbol `x` can still be managed by a single `md::Metadata` without hurting the type stability since all the distributions on the RHS of `~` are of the same type. - -However, in `Turing` models one cannot have this restriction, so we must use a type unstable `Metadata` if we want to use one `Metadata` instance for the whole model. This is what `UntypedVarInfo` does. A type unstable `Metadata` will still work but will have inferior performance. - +--- +title: Turing Compiler Design +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +In this section, the current design of Turing's model "compiler" is described which enables Turing to perform various types of Bayesian inference without changing the model definition. The "compiler" is essentially just a macro that rewrites the user's model definition to a function that generates a `Model` struct that Julia's dispatch can operate on and that Julia's compiler can successfully do type inference on for efficient machine code generation. + +# Overview + +The following terminology will be used in this section: + + - `D`: observed data variables conditioned upon in the posterior, + - `P`: parameter variables distributed according to the prior distributions, these will also be referred to as random variables, + - `Model`: a fully defined probabilistic model with input data + +`Turing`'s `@model` macro rewrites the user-provided function definition such that it can be used to instantiate a `Model` by passing in the observed data `D`. + +The following are the main jobs of the `@model` macro: + + 1. Parse `~` and `.~` lines, e.g. `y .~ Normal.(c*x, 1.0)` + 2. Figure out if a variable belongs to the data `D` and or to the parameters `P` + 3. Enable the handling of missing data variables in `D` when defining a `Model` and treating them as parameter variables in `P` instead + 4. Enable the tracking of random variables using the data structures `VarName` and `VarInfo` + 5. Change `~`/`.~` lines with a variable in `P` on the LHS to a call to `tilde_assume` or `dot_tilde_assume` + 6. Change `~`/`.~` lines with a variable in `D` on the LHS to a call to `tilde_observe` or `dot_tilde_observe` + 7. Enable type stable automatic differentiation of the model using type parameters + +## The model + +A `model::Model` is a callable struct that one can sample from by calling + +```{julia} +#| eval: false +(model::Model)([rng, varinfo, sampler, context]) +``` + +where `rng` is a random number generator (default: `Random.default_rng()`), `varinfo` is a data structure that stores information +about the random variables (default: `DynamicPPL.VarInfo()`), `sampler` is a sampling algorithm (default: `DynamicPPL.SampleFromPrior()`), +and `context` is a sampling context that can, e.g., modify how the log probability is accumulated (default: `DynamicPPL.DefaultContext()`). + +Sampling resets the log joint probability of `varinfo` and increases the evaluation counter of `sampler`. If `context` is a `LikelihoodContext`, +only the log likelihood will be accumulated. With the `DefaultContext` the log joint probability of `P` and `D` is accumulated. + +The `Model` struct contains the three internal fields `f`, `args` and `defaults`. +When `model::Model` is called, then the internal function `model.f` is called as `model.f(rng, varinfo, sampler, context, model.args...)` +(for multithreaded sampling, instead of `varinfo` a threadsafe wrapper is passed to `model.f`). +The positional and keyword arguments that were passed to the user-defined model function when the model was created are saved as a `NamedTuple` +in `model.args`. The default values of the positional and keyword arguments of the user-defined model functions, if any, are saved as a `NamedTuple` +in `model.defaults`. They are used for constructing model instances with different arguments by the `logprob` and `prob` string macros. + +# Example + +Let's take the following model as an example: + +```{julia} +#| eval: false +@model function gauss( + x=missing, y=1.0, ::Type{TV}=Vector{Float64} +) where {TV<:AbstractVector} + if x === missing + x = TV(undef, 3) + end + p = TV(undef, 2) + p[1] ~ InverseGamma(2, 3) + p[2] ~ Normal(0, 1.0) + @. x[1:2] ~ Normal(p[2], sqrt(p[1])) + x[3] ~ Normal() + return y ~ Normal(p[2], sqrt(p[1])) +end +``` + +The above call of the `@model` macro defines the function `gauss` with positional arguments `x`, `y`, and `::Type{TV}`, rewritten in +such a way that every call of it returns a `model::Model`. Note that only the function body is modified by the `@model` macro, and the +function signature is left untouched. It is also possible to implement models with keyword arguments such as + +```{julia} +#| eval: false +@model function gauss( + ::Type{TV}=Vector{Float64}; x=missing, y=1.0 +) where {TV<:AbstractVector} + return ... +end +``` + +This would allow us to generate a model by calling `gauss(; x = rand(3))`. + +If an argument has a default value `missing`, it is treated as a random variable. For variables which require an initialization because we +need to loop or broadcast over its elements, such as `x` above, the following needs to be done: + +```{julia} +#| eval: false +if x === missing + x = ... +end +``` + +Note that since `gauss` behaves like a regular function it is possible to define additional dispatches in a second step as well. For +instance, we could achieve the same behaviour by + +```{julia} +#| eval: false +@model function gauss(x, y=1.0, ::Type{TV}=Vector{Float64}) where {TV<:AbstractVector} + p = TV(undef, 2) + return ... +end + +function gauss(::Missing, y=1.0, ::Type{TV}=Vector{Float64}) where {TV<:AbstractVector} + return gauss(TV(undef, 3), y, TV) +end +``` + +If `x` is sampled as a whole from a distribution and not indexed, e.g., `x ~ Normal(...)` or `x ~ MvNormal(...)`, +there is no need to initialize it in an `if`-block. + +## Step 1: Break up the model definition + +First, the `@model` macro breaks up the user-provided function definition using `DynamicPPL.build_model_info`. This function +returns a dictionary consisting of: + + - `allargs_exprs`: The expressions of the positional and keyword arguments, without default values. + - `allargs_syms`: The names of the positional and keyword arguments, e.g., `[:x, :y, :TV]` above. + - `allargs_namedtuple`: An expression that constructs a `NamedTuple` of the positional and keyword arguments, e.g., `:((x = x, y = y, TV = TV))` above. + - `defaults_namedtuple`: An expression that constructs a `NamedTuple` of the default positional and keyword arguments, if any, e.g., `:((x = missing, y = 1, TV = Vector{Float64}))` above. + - `modeldef`: A dictionary with the name, arguments, and function body of the model definition, as returned by `MacroTools.splitdef`. + +## Step 2: Generate the body of the internal model function + +In a second step, `DynamicPPL.generate_mainbody` generates the main part of the transformed function body using the user-provided function body +and the provided function arguments, without default values, for figuring out if a variable denotes an observation or a random variable. +Hereby the function `DynamicPPL.generate_tilde` replaces the `L ~ R` lines in the model and the function `DynamicPPL.generate_dot_tilde` replaces +the `@. L ~ R` and `L .~ R` lines in the model. + +In the above example, `p[1] ~ InverseGamma(2, 3)` is replaced with something similar to + +```{julia} +#| eval: false +#= REPL[25]:6 =# +begin + var"##tmpright#323" = InverseGamma(2, 3) + var"##tmpright#323" isa Union{Distribution,AbstractVector{<:Distribution}} || throw( + ArgumentError( + "Right-hand side of a ~ must be subtype of Distribution or a vector of Distributions.", + ), + ) + var"##vn#325" = (DynamicPPL.VarName)(:p, ((1,),)) + var"##inds#326" = ((1,),) + p[1] = (DynamicPPL.tilde_assume)( + _rng, + _context, + _sampler, + var"##tmpright#323", + var"##vn#325", + var"##inds#326", + _varinfo, + ) +end +``` + +Here the first line is a so-called line number node that enables more helpful error messages by providing users with the exact location +of the error in their model definition. Then the right hand side (RHS) of the `~` is assigned to a variable (with an automatically generated name). +We check that the RHS is a distribution or an array of distributions, otherwise an error is thrown. +Next we extract a compact representation of the variable with its name and index (or indices). Finally, the `~` expression is replaced with +a call to `DynamicPPL.tilde_assume` since the compiler figured out that `p[1]` is a random variable using the following +heuristic: + + 1. If the symbol on the LHS of `~`, `:p` in this case, is not among the arguments to the model, `(:x, :y, :T)` in this case, it is a random variable. + 2. If the symbol on the LHS of `~`, `:p` in this case, is among the arguments to the model but has a value of `missing`, it is a random variable. + 3. If the value of the LHS of `~`, `p[1]` in this case, is `missing`, then it is a random variable. + 4. Otherwise, it is treated as an observation. + +The `DynamicPPL.tilde_assume` function takes care of sampling the random variable, if needed, and updating its value and the accumulated log joint +probability in the `_varinfo` object. If `L ~ R` is an observation, `DynamicPPL.tilde_observe` is called with the same arguments except the +random number generator `_rng` (since observations are never sampled). + +A similar transformation is performed for expressions of the form `@. L ~ R` and `L .~ R`. For instance, +`@. x[1:2] ~ Normal(p[2], sqrt(p[1]))` is replaced with + +```{julia} +#| eval: false +#= REPL[25]:8 =# +begin + var"##tmpright#331" = Normal.(p[2], sqrt.(p[1])) + var"##tmpright#331" isa Union{Distribution,AbstractVector{<:Distribution}} || throw( + ArgumentError( + "Right-hand side of a ~ must be subtype of Distribution or a vector of Distributions.", + ), + ) + var"##vn#333" = (DynamicPPL.VarName)(:x, ((1:2,),)) + var"##inds#334" = ((1:2,),) + var"##isassumption#335" = begin + let var"##vn#336" = (DynamicPPL.VarName)(:x, ((1:2,),)) + if !((DynamicPPL.inargnames)(var"##vn#336", _model)) || + (DynamicPPL.inmissings)(var"##vn#336", _model) + true + else + x[1:2] === missing + end + end + end + if var"##isassumption#335" + x[1:2] .= (DynamicPPL.dot_tilde_assume)( + _rng, + _context, + _sampler, + var"##tmpright#331", + x[1:2], + var"##vn#333", + var"##inds#334", + _varinfo, + ) + else + (DynamicPPL.dot_tilde_observe)( + _context, + _sampler, + var"##tmpright#331", + x[1:2], + var"##vn#333", + var"##inds#334", + _varinfo, + ) + end +end +``` + +The main difference in the expanded code between `L ~ R` and `@. L ~ R` is that the former doesn't assume `L` to be defined, it can be a new Julia variable in the scope, while the latter assumes `L` already exists. Moreover, `DynamicPPL.dot_tilde_assume` and `DynamicPPL.dot_tilde_observe` are called +instead of `DynamicPPL.tilde_assume` and `DynamicPPL.tilde_observe`. + +## Step 3: Replace the user-provided function body + +Finally, we replace the user-provided function body using `DynamicPPL.build_output`. This function uses `MacroTools.combinedef` to reassemble +the user-provided function with a new function body. In the modified function body an anonymous function is created whose function body +was generated in step 2 above and whose arguments are + + - a random number generator `_rng`, + - a model `_model`, + - a datastructure `_varinfo`, + - a sampler `_sampler`, + - a sampling context `_context`, + - and all positional and keyword arguments of the user-provided model function as positional arguments + without any default values. Finally, in the new function body a `model::Model` with this anonymous function as internal function is returned. + +# `VarName` + +In order to track random variables in the sampling process, `Turing` uses the `VarName` struct which acts as a random variable identifier generated at runtime. The `VarName` of a random variable is generated from the expression on the LHS of a `~` statement when the symbol on the LHS is in the set `P` of unobserved random variables. Every `VarName` instance has a type parameter `sym` which is the symbol of the Julia variable in the model that the random variable belongs to. For example, `x[1] ~ Normal()` will generate an instance of `VarName{:x}` assuming `x` is an unobserved random variable. Every `VarName` also has a field `indexing`, which stores the indices required to access the random variable from the Julia variable indicated by `sym` as a tuple of tuples. Each element of the tuple thereby contains the indices of one indexing operation (`VarName` also supports hierarchical arrays and range indexing). Some examples: + + - `x ~ Normal()` will generate a `VarName(:x, ())`. + - `x[1] ~ Normal()` will generate a `VarName(:x, ((1,),))`. + - `x[:,1] ~ MvNormal(zeros(2), I)` will generate a `VarName(:x, ((Colon(), 1),))`. + - `x[:,1][1+1] ~ Normal()` will generate a `VarName(:x, ((Colon(), 1), (2,)))`. + +The easiest way to manually construct a `VarName` is to use the `@varname` macro on an indexing expression, which will take the `sym` value from the actual variable name, and put the index values appropriately into the constructor. + +# `VarInfo` + +## Overview + +`VarInfo` is the data structure in `Turing` that facilitates tracking random variables and certain metadata about them that are required for sampling. For instance, the distribution of every random variable is stored in `VarInfo` because we need to know the support of every random variable when sampling using HMC for example. Random variables whose distributions have a constrained support are transformed using a bijector from [Bijectors.jl](https://github.com/TuringLang/Bijectors.jl) so that the sampling happens in the unconstrained space. Different samplers require different metadata about the random variables. + +The definition of `VarInfo` in `Turing` is: + +```{julia} +#| eval: false +struct VarInfo{Tmeta, Tlogp} <: AbstractVarInfo + metadata::Tmeta + logp::Base.RefValue{Tlogp} + num_produce::Base.RefValue{Int} +end +``` + +Based on the type of `metadata`, the `VarInfo` is either aliased `UntypedVarInfo` or `TypedVarInfo`. `metadata` can be either a subtype of the union type `Metadata` or a `NamedTuple` of multiple such subtypes. Let `vi` be an instance of `VarInfo`. If `vi isa VarInfo{<:Metadata}`, then it is called an `UntypedVarInfo`. If `vi isa VarInfo{<:NamedTuple}`, then `vi.metadata` would be a `NamedTuple` mapping each symbol in `P` to an instance of `Metadata`. `vi` would then be called a `TypedVarInfo`. The other fields of `VarInfo` include `logp` which is used to accumulate the log probability or log probability density of the variables in `P` and `D`. `num_produce` keeps track of how many observations have been made in the model so far. This is incremented when running a `~` statement when the symbol on the LHS is in `D`. + +## `Metadata` + +The `Metadata` struct stores some metadata about the random variables sampled. This helps +query certain information about a variable such as: its distribution, which samplers +sample this variable, its value and whether this value is transformed to real space or +not. Let `md` be an instance of `Metadata`: + + - `md.vns` is the vector of all `VarName` instances. Let `vn` be an arbitrary element of `md.vns` + - `md.idcs` is the dictionary that maps each `VarName` instance to its index in + `md.vns`, `md.ranges`, `md.dists`, `md.orders` and `md.flags`. + - `md.vns[md.idcs[vn]] == vn`. + - `md.dists[md.idcs[vn]]` is the distribution of `vn`. + - `md.gids[md.idcs[vn]]` is the set of algorithms used to sample `vn`. This is used in + the Gibbs sampling process. + - `md.orders[md.idcs[vn]]` is the number of `observe` statements before `vn` is sampled. + - `md.ranges[md.idcs[vn]]` is the index range of `vn` in `md.vals`. + - `md.vals[md.ranges[md.idcs[vn]]]` is the linearized vector of values of corresponding to `vn`. + - `md.flags` is a dictionary of true/false flags. `md.flags[flag][md.idcs[vn]]` is the + value of `flag` corresponding to `vn`. + +Note that in order to make `md::Metadata` type stable, all the `md.vns` must have the same symbol and distribution type. However, one can have a single Julia variable, e.g. `x`, that is a matrix or a hierarchical array sampled in partitions, e.g. `x[1][:] ~ MvNormal(zeros(2), I); x[2][:] ~ MvNormal(ones(2), I)`. The symbol `x` can still be managed by a single `md::Metadata` without hurting the type stability since all the distributions on the RHS of `~` are of the same type. + +However, in `Turing` models one cannot have this restriction, so we must use a type unstable `Metadata` if we want to use one `Metadata` instance for the whole model. This is what `UntypedVarInfo` does. A type unstable `Metadata` will still work but will have inferior performance. + To strike a balance between flexibility and performance when constructing the `spl::Sampler` instance, the model is first run by sampling the parameters in `P` from their priors using an `UntypedVarInfo`, i.e. a type unstable `Metadata` is used for all the variables. Then once all the symbols and distribution types have been identified, a `vi::TypedVarInfo` is constructed where `vi.metadata` is a `NamedTuple` mapping each symbol in `P` to a specialized instance of `Metadata`. So as long as each symbol in `P` is sampled from only one type of distributions, `vi::TypedVarInfo` will have fully concretely typed fields which brings out the peak performance of Julia. \ No newline at end of file diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-06-for-developers-interface/Project.toml b/tutorials/docs-06-for-developers-interface/Project.toml old mode 100644 new mode 100755 index fbde35d4c..65c256b21 --- a/tutorials/docs-06-for-developers-interface/Project.toml +++ b/tutorials/docs-06-for-developers-interface/Project.toml @@ -1,4 +1,4 @@ -[deps] -AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +[deps] +AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" diff --git a/tutorials/docs-06-for-developers-interface/index.qmd b/tutorials/docs-06-for-developers-interface/index.qmd old mode 100644 new mode 100755 index c2196b1bf..29e20d84e --- a/tutorials/docs-06-for-developers-interface/index.qmd +++ b/tutorials/docs-06-for-developers-interface/index.qmd @@ -1,313 +1,320 @@ ---- -title: Interface Guide -engine: julia ---- - -# The sampling interface - -Turing implements a sampling interface (hosted at [AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl)) that is intended to provide a common framework for Markov chain Monte Carlo samplers. The interface presents several structures and functions that one needs to overload in order to implement an interface-compatible sampler. - -This guide will demonstrate how to implement the interface without Turing. - -## Interface overview - -Any implementation of an inference method that uses the AbstractMCMC interface should implement a subset of the following types and functions: - -1. A subtype of `AbstractSampler`, defined as a mutable struct containing state information or sampler parameters. -2. A function `sample_init!` which performs any necessary set-up (default: do not perform any set-up). -3. A function `step!` which returns a transition that represents a single draw from the sampler. -4. A function `transitions_init` which returns a container for the transitions obtained from the sampler (default: return a `Vector{T}` of length `N` where `T` is the type of the transition obtained in the first step and `N` is the number of requested samples). -5. A function `transitions_save!` which saves transitions to the container (default: save the transition of iteration `i` at position `i` in the vector of transitions). -6. A function `sample_end!` which handles any sampler wrap-up (default: do not perform any wrap-up). -7. A function `bundle_samples` which accepts the container of transitions and returns a collection of samples (default: return the vector of transitions). - -The interface methods with exclamation points are those that are intended to allow for state mutation. Any mutating function is meant to allow mutation where needed -- you might use: - -- `sample_init!` to run some kind of sampler preparation, before sampling begins. This could mutate a sampler's state. -- `step!` might mutate a sampler flag after each sample. -- `sample_end!` contains any wrap-up you might need to do. If you were sampling in a transformed space, this might be where you convert everything back to a constrained space. - -## Why do you have an interface? - -The motivation for the interface is to allow Julia's fantastic probabilistic programming language community to have a set of standards and common implementations so we can all thrive together. Markov chain Monte Carlo methods tend to have a very similar framework to one another, and so a common interface should help more great inference methods built in single-purpose packages to experience more use among the community. - -## Implementing Metropolis-Hastings without Turing - -[Metropolis-Hastings](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo) is often the first sampling method that people are exposed to. It is a very straightforward algorithm and is accordingly the easiest to implement, so it makes for a good example. In this section, you will learn how to use the types and functions listed above to implement the Metropolis-Hastings sampler using the MCMC interface. - -The full code for this implementation is housed in [AdvancedMH.jl](https://github.com/TuringLang/AdvancedMH.jl). - -### Imports - -Let's begin by importing the relevant libraries. We'll import `AbstractMCMC`, which contains the interface framework we'll fill out. We also need `Distributions` and `Random`. - -```{julia} -# Import the relevant libraries. -using AbstractMCMC: AbstractMCMC -using Distributions -using Random -``` - -An interface extension (like the one we're writing right now) typically requires that you overload or implement several functions. Specifically, you should `import` the functions you intend to overload. This next code block accomplishes that. - -From `Distributions`, we need `Sampleable`, `VariateForm`, and `ValueSupport`, three abstract types that define a distribution. Models in the interface are assumed to be subtypes of `Sampleable{VariateForm, ValueSupport}`. In this section our model is going be be extremely simple, so we will not end up using these except to make sure that the inference functions are dispatching correctly. - -### Sampler - -Let's begin our sampler definition by defining a sampler called `MetropolisHastings` which is a subtype of `AbstractSampler`. Correct typing is very important for proper interface implementation -- if you are missing a subtype, your method may not be dispatched to when you call `sample`. - -```{julia} -# Define a sampler type. -struct MetropolisHastings{T,D} <: AbstractMCMC.AbstractSampler - init_θ::T - proposal::D -end - -# Default constructors. -MetropolisHastings(init_θ::Real) = MetropolisHastings(init_θ, Normal(0, 1)) -function MetropolisHastings(init_θ::Vector{<:Real}) - return MetropolisHastings(init_θ, MvNormal(zero(init_θ), I)) -end -``` - -Above, we have defined a sampler that stores the initial parameterization of the prior, and a distribution object from which proposals are drawn. You can have a struct that has no fields, and simply use it for dispatching onto the relevant functions, or you can store a large amount of state information in your sampler. - -The general intuition for what to store in your sampler struct is that anything you may need to perform inference between samples but you don't want to store in a transition should go into the sampler struct. It's the only way you can carry non-sample related state information between `step!` calls. - -### Model - -Next, we need to have a model of some kind. A model is a struct that's a subtype of `AbstractModel` that contains whatever information is necessary to perform inference on your problem. In our case we want to know the mean and variance parameters for a standard Normal distribution, so we can keep our model to the log density of a Normal. - -Note that we only have to do this because we are not yet integrating the sampler with Turing -- Turing has a very sophisticated modelling engine that removes the need to define custom model structs. - -```{julia} -# Define a model type. Stores the log density function. -struct DensityModel{F<:Function} <: AbstractMCMC.AbstractModel - ℓπ::F -end -``` - -### Transition - -The next step is to define some transition which we will return from each `step!` call. We'll keep it simple by just defining a wrapper struct that contains the parameter draws and the log density of that draw: - -```{julia} -# Create a very basic Transition type, only stores the -# parameter draws and the log probability of the draw. -struct Transition{T,L} - θ::T - lp::L -end - -# Store the new draw and its log density. -Transition(model::DensityModel, θ) = Transition(θ, ℓπ(model, θ)) -``` - -`Transition` can now store any type of parameter, whether it's a vector of draws from multiple parameters or a single univariate draw. - -### Metropolis-Hastings - -Now it's time to get into the actual inference. We've defined all of the core pieces we need, but we need to implement the `step!` function which actually performs inference. - -As a refresher, Metropolis-Hastings implements a very basic algorithm: - -1. Pick some initial state, ``\theta_0``. - -2. For ``t`` in ``[1,N],`` do - - + Generate a proposal parameterization ``\theta^\prime_t \sim q(\theta^\prime_t \mid \theta_{t-1}).`` - - + Calculate the acceptance probability, ``\alpha = \text{min}\left[1,\frac{\pi(\theta'_t)}{\pi(\theta_{t-1})} \frac{q(\theta_{t-1} \mid \theta'_t)}{q(\theta'_t \mid \theta_{t-1})}) \right].`` - - + If ``U \le \alpha`` where ``U \sim [0,1],`` then ``\theta_t = \theta'_t.`` Otherwise, ``\theta_t = \theta_{t-1}.`` - -Of course, it's much easier to do this in the log space, so the acceptance probability is more commonly written as - -```{.cell-bg} -\log \alpha = \min\left[0, \log \pi(\theta'_t) - \log \pi(\theta_{t-1}) + \log q(\theta_{t-1} \mid \theta^\prime_t) - \log q(\theta\prime_t \mid \theta_{t-1}) \right]. -``` - -In interface terms, we should do the following: - -1. Make a new transition containing a proposed sample. -2. Calculate the acceptance probability. -3. If we accept, return the new transition, otherwise, return the old one. - -### Steps - -The `step!` function is the function that performs the bulk of your inference. In our case, we will implement two `step!` functions -- one for the very first iteration, and one for every subsequent iteration. - -```{julia} -#| eval: false -# Define the first step! function, which is called at the -# beginning of sampling. Return the initial parameter used -# to define the sampler. -function AbstractMCMC.step!( - rng::AbstractRNG, - model::DensityModel, - spl::MetropolisHastings, - N::Integer, - ::Nothing; - kwargs..., -) - return Transition(model, spl.init_θ) -end -``` - -The first `step!` function just packages up the initial parameterization inside the sampler, and returns it. We implicitly accept the very first parameterization. - -The other `step!` function performs the usual steps from Metropolis-Hastings. Included are several helper functions, `proposal` and `q`, which are designed to replicate the functions in the pseudocode above. - -- `proposal` generates a new proposal in the form of a `Transition`, which can be univariate if the value passed in is univariate, or it can be multivariate if the `Transition` given is multivariate. Proposals use a basic `Normal` or `MvNormal` proposal distribution. -- `q` returns the log density of one parameterization conditional on another, according to the proposal distribution. -- `step!` generates a new proposal, checks the acceptance probability, and then returns either the previous transition or the proposed transition. - - -```{julia} -#| eval: false -# Define a function that makes a basic proposal depending on a univariate -# parameterization or a multivariate parameterization. -function propose(spl::MetropolisHastings, model::DensityModel, θ::Real) - return Transition(model, θ + rand(spl.proposal)) -end -function propose(spl::MetropolisHastings, model::DensityModel, θ::Vector{<:Real}) - return Transition(model, θ + rand(spl.proposal)) -end -function propose(spl::MetropolisHastings, model::DensityModel, t::Transition) - return propose(spl, model, t.θ) -end - -# Calculates the probability `q(θ|θcond)`, using the proposal distribution `spl.proposal`. -q(spl::MetropolisHastings, θ::Real, θcond::Real) = logpdf(spl.proposal, θ - θcond) -function q(spl::MetropolisHastings, θ::Vector{<:Real}, θcond::Vector{<:Real}) - return logpdf(spl.proposal, θ - θcond) -end -q(spl::MetropolisHastings, t1::Transition, t2::Transition) = q(spl, t1.θ, t2.θ) - -# Calculate the density of the model given some parameterization. -ℓπ(model::DensityModel, θ) = model.ℓπ(θ) -ℓπ(model::DensityModel, t::Transition) = t.lp - -# Define the other step function. Returns a Transition containing -# either a new proposal (if accepted) or the previous proposal -# (if not accepted). -function AbstractMCMC.step!( - rng::AbstractRNG, - model::DensityModel, - spl::MetropolisHastings, - ::Integer, - θ_prev::Transition; - kwargs..., -) - # Generate a new proposal. - θ = propose(spl, model, θ_prev) - - # Calculate the log acceptance probability. - α = ℓπ(model, θ) - ℓπ(model, θ_prev) + q(spl, θ_prev, θ) - q(spl, θ, θ_prev) - - # Decide whether to return the previous θ or the new one. - if log(rand(rng)) < min(α, 0.0) - return θ - else - return θ_prev - end -end -``` - -### Chains - -In the default implementation, `sample` just returns a vector of all transitions. If instead you would like to obtain a `Chains` object (e.g., to simplify downstream analysis), you have to implement the `bundle_samples` function as well. It accepts the vector of transitions and returns a collection of samples. Fortunately, our `Transition` is incredibly simple, and we only need to build a little bit of functionality to accept custom parameter names passed in by the user. - -```{julia} -#| eval: false -# A basic chains constructor that works with the Transition struct we defined. -function AbstractMCMC.bundle_samples( - rng::AbstractRNG, - ℓ::DensityModel, - s::MetropolisHastings, - N::Integer, - ts::Vector{<:Transition}, - chain_type::Type{Any}; - param_names=missing, - kwargs..., -) - # Turn all the transitions into a vector-of-vectors. - vals = copy(reduce(hcat, [vcat(t.θ, t.lp) for t in ts])') - - # Check if we received any parameter names. - if ismissing(param_names) - param_names = ["Parameter $i" for i in 1:(length(first(vals)) - 1)] - end - - # Add the log density field to the parameter names. - push!(param_names, "lp") - - # Bundle everything up and return a Chains struct. - return Chains(vals, param_names, (internals=["lp"],)) -end -``` - -All done! - -You can even implement different output formats by implementing `bundle_samples` for different `chain_type`s, which can be provided as keyword argument to `sample`. As default `sample` uses `chain_type = Any`. - -### Testing the implementation - -Now that we have all the pieces, we should test the implementation by defining a model to calculate the mean and variance parameters of a Normal distribution. We can do this by constructing a target density function, providing a sample of data, and then running the sampler with `sample`. - -```{julia} -#| eval: false -# Generate a set of data from the posterior we want to estimate. -data = rand(Normal(5, 3), 30) - -# Define the components of a basic model. -insupport(θ) = θ[2] >= 0 -dist(θ) = Normal(θ[1], θ[2]) -density(θ) = insupport(θ) ? sum(logpdf.(dist(θ), data)) : -Inf - -# Construct a DensityModel. -model = DensityModel(density) - -# Set up our sampler with initial parameters. -spl = MetropolisHastings([0.0, 0.0]) - -# Sample from the posterior. -chain = sample(model, spl, 100000; param_names=["μ", "σ"]) -``` - -If all the interface functions have been extended properly, you should get an output from `display(chain)` that looks something like this: - -```{.cell-bg} -Object of type Chains, with data of type 100000×3×1 Array{Float64,3} - -Iterations = 1:100000 -Thinning interval = 1 -Chains = 1 -Samples per chain = 100000 -internals = lp -parameters = μ, σ - -2-element Array{ChainDataFrame,1} - -Summary Statistics - -│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │ -│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │ -├─────┼────────────┼─────────┼──────────┼────────────┼────────────┼─────────┼─────────┤ -│ 1 │ μ │ 5.33157 │ 0.854193 │ 0.0027012 │ 0.00893069 │ 8344.75 │ 1.00009 │ -│ 2 │ σ │ 4.54992 │ 0.632916 │ 0.00200146 │ 0.00534942 │ 14260.8 │ 1.00005 │ - -Quantiles - -│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │ -│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ -├─────┼────────────┼─────────┼─────────┼─────────┼─────────┼─────────┤ -│ 1 │ μ │ 3.6595 │ 4.77754 │ 5.33182 │ 5.89509 │ 6.99651 │ -│ 2 │ σ │ 3.5097 │ 4.09732 │ 4.47805 │ 4.93094 │ 5.96821 │ -``` - -It looks like we're extremely close to our true parameters of `Normal(5,3)`, though with a fairly high variance due to the low sample size. - -## Conclusion - +--- +title: Interface Guide +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +# The sampling interface + +Turing implements a sampling interface (hosted at [AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl)) that is intended to provide a common framework for Markov chain Monte Carlo samplers. The interface presents several structures and functions that one needs to overload in order to implement an interface-compatible sampler. + +This guide will demonstrate how to implement the interface without Turing. + +## Interface overview + +Any implementation of an inference method that uses the AbstractMCMC interface should implement a subset of the following types and functions: + +1. A subtype of `AbstractSampler`, defined as a mutable struct containing state information or sampler parameters. +2. A function `sample_init!` which performs any necessary set-up (default: do not perform any set-up). +3. A function `step!` which returns a transition that represents a single draw from the sampler. +4. A function `transitions_init` which returns a container for the transitions obtained from the sampler (default: return a `Vector{T}` of length `N` where `T` is the type of the transition obtained in the first step and `N` is the number of requested samples). +5. A function `transitions_save!` which saves transitions to the container (default: save the transition of iteration `i` at position `i` in the vector of transitions). +6. A function `sample_end!` which handles any sampler wrap-up (default: do not perform any wrap-up). +7. A function `bundle_samples` which accepts the container of transitions and returns a collection of samples (default: return the vector of transitions). + +The interface methods with exclamation points are those that are intended to allow for state mutation. Any mutating function is meant to allow mutation where needed -- you might use: + +- `sample_init!` to run some kind of sampler preparation, before sampling begins. This could mutate a sampler's state. +- `step!` might mutate a sampler flag after each sample. +- `sample_end!` contains any wrap-up you might need to do. If you were sampling in a transformed space, this might be where you convert everything back to a constrained space. + +## Why do you have an interface? + +The motivation for the interface is to allow Julia's fantastic probabilistic programming language community to have a set of standards and common implementations so we can all thrive together. Markov chain Monte Carlo methods tend to have a very similar framework to one another, and so a common interface should help more great inference methods built in single-purpose packages to experience more use among the community. + +## Implementing Metropolis-Hastings without Turing + +[Metropolis-Hastings](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo) is often the first sampling method that people are exposed to. It is a very straightforward algorithm and is accordingly the easiest to implement, so it makes for a good example. In this section, you will learn how to use the types and functions listed above to implement the Metropolis-Hastings sampler using the MCMC interface. + +The full code for this implementation is housed in [AdvancedMH.jl](https://github.com/TuringLang/AdvancedMH.jl). + +### Imports + +Let's begin by importing the relevant libraries. We'll import `AbstractMCMC`, which contains the interface framework we'll fill out. We also need `Distributions` and `Random`. + +```{julia} +# Import the relevant libraries. +using AbstractMCMC: AbstractMCMC +using Distributions +using Random +``` + +An interface extension (like the one we're writing right now) typically requires that you overload or implement several functions. Specifically, you should `import` the functions you intend to overload. This next code block accomplishes that. + +From `Distributions`, we need `Sampleable`, `VariateForm`, and `ValueSupport`, three abstract types that define a distribution. Models in the interface are assumed to be subtypes of `Sampleable{VariateForm, ValueSupport}`. In this section our model is going be be extremely simple, so we will not end up using these except to make sure that the inference functions are dispatching correctly. + +### Sampler + +Let's begin our sampler definition by defining a sampler called `MetropolisHastings` which is a subtype of `AbstractSampler`. Correct typing is very important for proper interface implementation -- if you are missing a subtype, your method may not be dispatched to when you call `sample`. + +```{julia} +# Define a sampler type. +struct MetropolisHastings{T,D} <: AbstractMCMC.AbstractSampler + init_θ::T + proposal::D +end + +# Default constructors. +MetropolisHastings(init_θ::Real) = MetropolisHastings(init_θ, Normal(0, 1)) +function MetropolisHastings(init_θ::Vector{<:Real}) + return MetropolisHastings(init_θ, MvNormal(zero(init_θ), I)) +end +``` + +Above, we have defined a sampler that stores the initial parameterization of the prior, and a distribution object from which proposals are drawn. You can have a struct that has no fields, and simply use it for dispatching onto the relevant functions, or you can store a large amount of state information in your sampler. + +The general intuition for what to store in your sampler struct is that anything you may need to perform inference between samples but you don't want to store in a transition should go into the sampler struct. It's the only way you can carry non-sample related state information between `step!` calls. + +### Model + +Next, we need to have a model of some kind. A model is a struct that's a subtype of `AbstractModel` that contains whatever information is necessary to perform inference on your problem. In our case we want to know the mean and variance parameters for a standard Normal distribution, so we can keep our model to the log density of a Normal. + +Note that we only have to do this because we are not yet integrating the sampler with Turing -- Turing has a very sophisticated modelling engine that removes the need to define custom model structs. + +```{julia} +# Define a model type. Stores the log density function. +struct DensityModel{F<:Function} <: AbstractMCMC.AbstractModel + ℓπ::F +end +``` + +### Transition + +The next step is to define some transition which we will return from each `step!` call. We'll keep it simple by just defining a wrapper struct that contains the parameter draws and the log density of that draw: + +```{julia} +# Create a very basic Transition type, only stores the +# parameter draws and the log probability of the draw. +struct Transition{T,L} + θ::T + lp::L +end + +# Store the new draw and its log density. +Transition(model::DensityModel, θ) = Transition(θ, ℓπ(model, θ)) +``` + +`Transition` can now store any type of parameter, whether it's a vector of draws from multiple parameters or a single univariate draw. + +### Metropolis-Hastings + +Now it's time to get into the actual inference. We've defined all of the core pieces we need, but we need to implement the `step!` function which actually performs inference. + +As a refresher, Metropolis-Hastings implements a very basic algorithm: + +1. Pick some initial state, ``\theta_0``. + +2. For ``t`` in ``[1,N],`` do + + + Generate a proposal parameterization ``\theta^\prime_t \sim q(\theta^\prime_t \mid \theta_{t-1}).`` + + + Calculate the acceptance probability, ``\alpha = \text{min}\left[1,\frac{\pi(\theta'_t)}{\pi(\theta_{t-1})} \frac{q(\theta_{t-1} \mid \theta'_t)}{q(\theta'_t \mid \theta_{t-1})}) \right].`` + + + If ``U \le \alpha`` where ``U \sim [0,1],`` then ``\theta_t = \theta'_t.`` Otherwise, ``\theta_t = \theta_{t-1}.`` + +Of course, it's much easier to do this in the log space, so the acceptance probability is more commonly written as + +```{.cell-bg} +\log \alpha = \min\left[0, \log \pi(\theta'_t) - \log \pi(\theta_{t-1}) + \log q(\theta_{t-1} \mid \theta^\prime_t) - \log q(\theta\prime_t \mid \theta_{t-1}) \right]. +``` + +In interface terms, we should do the following: + +1. Make a new transition containing a proposed sample. +2. Calculate the acceptance probability. +3. If we accept, return the new transition, otherwise, return the old one. + +### Steps + +The `step!` function is the function that performs the bulk of your inference. In our case, we will implement two `step!` functions -- one for the very first iteration, and one for every subsequent iteration. + +```{julia} +#| eval: false +# Define the first step! function, which is called at the +# beginning of sampling. Return the initial parameter used +# to define the sampler. +function AbstractMCMC.step!( + rng::AbstractRNG, + model::DensityModel, + spl::MetropolisHastings, + N::Integer, + ::Nothing; + kwargs..., +) + return Transition(model, spl.init_θ) +end +``` + +The first `step!` function just packages up the initial parameterization inside the sampler, and returns it. We implicitly accept the very first parameterization. + +The other `step!` function performs the usual steps from Metropolis-Hastings. Included are several helper functions, `proposal` and `q`, which are designed to replicate the functions in the pseudocode above. + +- `proposal` generates a new proposal in the form of a `Transition`, which can be univariate if the value passed in is univariate, or it can be multivariate if the `Transition` given is multivariate. Proposals use a basic `Normal` or `MvNormal` proposal distribution. +- `q` returns the log density of one parameterization conditional on another, according to the proposal distribution. +- `step!` generates a new proposal, checks the acceptance probability, and then returns either the previous transition or the proposed transition. + + +```{julia} +#| eval: false +# Define a function that makes a basic proposal depending on a univariate +# parameterization or a multivariate parameterization. +function propose(spl::MetropolisHastings, model::DensityModel, θ::Real) + return Transition(model, θ + rand(spl.proposal)) +end +function propose(spl::MetropolisHastings, model::DensityModel, θ::Vector{<:Real}) + return Transition(model, θ + rand(spl.proposal)) +end +function propose(spl::MetropolisHastings, model::DensityModel, t::Transition) + return propose(spl, model, t.θ) +end + +# Calculates the probability `q(θ|θcond)`, using the proposal distribution `spl.proposal`. +q(spl::MetropolisHastings, θ::Real, θcond::Real) = logpdf(spl.proposal, θ - θcond) +function q(spl::MetropolisHastings, θ::Vector{<:Real}, θcond::Vector{<:Real}) + return logpdf(spl.proposal, θ - θcond) +end +q(spl::MetropolisHastings, t1::Transition, t2::Transition) = q(spl, t1.θ, t2.θ) + +# Calculate the density of the model given some parameterization. +ℓπ(model::DensityModel, θ) = model.ℓπ(θ) +ℓπ(model::DensityModel, t::Transition) = t.lp + +# Define the other step function. Returns a Transition containing +# either a new proposal (if accepted) or the previous proposal +# (if not accepted). +function AbstractMCMC.step!( + rng::AbstractRNG, + model::DensityModel, + spl::MetropolisHastings, + ::Integer, + θ_prev::Transition; + kwargs..., +) + # Generate a new proposal. + θ = propose(spl, model, θ_prev) + + # Calculate the log acceptance probability. + α = ℓπ(model, θ) - ℓπ(model, θ_prev) + q(spl, θ_prev, θ) - q(spl, θ, θ_prev) + + # Decide whether to return the previous θ or the new one. + if log(rand(rng)) < min(α, 0.0) + return θ + else + return θ_prev + end +end +``` + +### Chains + +In the default implementation, `sample` just returns a vector of all transitions. If instead you would like to obtain a `Chains` object (e.g., to simplify downstream analysis), you have to implement the `bundle_samples` function as well. It accepts the vector of transitions and returns a collection of samples. Fortunately, our `Transition` is incredibly simple, and we only need to build a little bit of functionality to accept custom parameter names passed in by the user. + +```{julia} +#| eval: false +# A basic chains constructor that works with the Transition struct we defined. +function AbstractMCMC.bundle_samples( + rng::AbstractRNG, + ℓ::DensityModel, + s::MetropolisHastings, + N::Integer, + ts::Vector{<:Transition}, + chain_type::Type{Any}; + param_names=missing, + kwargs..., +) + # Turn all the transitions into a vector-of-vectors. + vals = copy(reduce(hcat, [vcat(t.θ, t.lp) for t in ts])') + + # Check if we received any parameter names. + if ismissing(param_names) + param_names = ["Parameter $i" for i in 1:(length(first(vals)) - 1)] + end + + # Add the log density field to the parameter names. + push!(param_names, "lp") + + # Bundle everything up and return a Chains struct. + return Chains(vals, param_names, (internals=["lp"],)) +end +``` + +All done! + +You can even implement different output formats by implementing `bundle_samples` for different `chain_type`s, which can be provided as keyword argument to `sample`. As default `sample` uses `chain_type = Any`. + +### Testing the implementation + +Now that we have all the pieces, we should test the implementation by defining a model to calculate the mean and variance parameters of a Normal distribution. We can do this by constructing a target density function, providing a sample of data, and then running the sampler with `sample`. + +```{julia} +#| eval: false +# Generate a set of data from the posterior we want to estimate. +data = rand(Normal(5, 3), 30) + +# Define the components of a basic model. +insupport(θ) = θ[2] >= 0 +dist(θ) = Normal(θ[1], θ[2]) +density(θ) = insupport(θ) ? sum(logpdf.(dist(θ), data)) : -Inf + +# Construct a DensityModel. +model = DensityModel(density) + +# Set up our sampler with initial parameters. +spl = MetropolisHastings([0.0, 0.0]) + +# Sample from the posterior. +chain = sample(model, spl, 100000; param_names=["μ", "σ"]) +``` + +If all the interface functions have been extended properly, you should get an output from `display(chain)` that looks something like this: + +```{.cell-bg} +Object of type Chains, with data of type 100000×3×1 Array{Float64,3} + +Iterations = 1:100000 +Thinning interval = 1 +Chains = 1 +Samples per chain = 100000 +internals = lp +parameters = μ, σ + +2-element Array{ChainDataFrame,1} + +Summary Statistics + +│ Row │ parameters │ mean │ std │ naive_se │ mcse │ ess │ r_hat │ +│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Any │ Any │ +├─────┼────────────┼─────────┼──────────┼────────────┼────────────┼─────────┼─────────┤ +│ 1 │ μ │ 5.33157 │ 0.854193 │ 0.0027012 │ 0.00893069 │ 8344.75 │ 1.00009 │ +│ 2 │ σ │ 4.54992 │ 0.632916 │ 0.00200146 │ 0.00534942 │ 14260.8 │ 1.00005 │ + +Quantiles + +│ Row │ parameters │ 2.5% │ 25.0% │ 50.0% │ 75.0% │ 97.5% │ +│ │ Symbol │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ +├─────┼────────────┼─────────┼─────────┼─────────┼─────────┼─────────┤ +│ 1 │ μ │ 3.6595 │ 4.77754 │ 5.33182 │ 5.89509 │ 6.99651 │ +│ 2 │ σ │ 3.5097 │ 4.09732 │ 4.47805 │ 4.93094 │ 5.96821 │ +``` + +It looks like we're extremely close to our true parameters of `Normal(5,3)`, though with a fairly high variance due to the low sample size. + +## Conclusion + We've seen how to implement the sampling interface for general projects. Turing's interface methods are ever-evolving, so please open an issue at [AbstractMCMC](https://github.com/TuringLang/AbstractMCMC.jl) with feature requests or problems. \ No newline at end of file diff --git a/tutorials/docs-07-for-developers-variational-inference/index.qmd b/tutorials/docs-07-for-developers-variational-inference/index.qmd old mode 100644 new mode 100755 index 9f7fe921f..a9a18915a --- a/tutorials/docs-07-for-developers-variational-inference/index.qmd +++ b/tutorials/docs-07-for-developers-variational-inference/index.qmd @@ -1,321 +1,328 @@ ---- -title: Variational Inference -engine: julia ---- - -# Overview - -In this post we'll have a look at what's known as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods. In particular, we will focus on one of the more standard VI methods called **Automatic Differentiation Variational Inference (ADVI)**. - -Here we'll have a look at the theory behind VI, but if you're interested in how to use ADVI in Turing.jl, [check out this tutorial](../../tutorials/09-variational-inference). - -# Motivation - -In Bayesian inference one usually specifies a model as follows: given data ``\\{x_i\\}_{i = 1}^n``, - -```{.cell-bg} -\begin{align*} - \text{prior:} \quad z &\sim p(z) \\\\ - \text{likelihood:} \quad x_i &\overset{\text{i.i.d.}}{\sim} p(x \mid z) \quad \text{where} \quad i = 1, \dots, n -\end{align*} -``` - -where ``\overset{\text{i.i.d.}}{\sim}`` denotes that the samples are identically independently distributed. Our goal in Bayesian inference is then to find the _posterior_ - -```{.cell-bg} -p(z \mid \\{ x\_i \\}\_{i = 1}^n) \propto p(z) \prod\_{i=1}^{n} p(x\_i \mid z). -``` - -In general one cannot obtain a closed form expression for ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)``, but one might still be able to _sample_ from ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` with guarantees of converging to the target posterior ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` as the number of samples go to ``\infty``, e.g. MCMC. - -As you are hopefully already aware, Turing.jl provides a lot of different methods with asymptotic exactness guarantees that we can apply to such a problem! - -Unfortunately, these unbiased samplers can be prohibitively expensive to run. As the model ``p`` increases in complexity, the convergence of these unbiased samplers can slow down dramatically. Still, in the _infinite_ limit, these methods should converge to the true posterior! But infinity is fairly large, like, _at least_ more than 12, so this might take a while. - -In such a case it might be desirable to sacrifice some of these asymptotic guarantees, and instead _approximate_ the posterior ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` using some other model which we'll denote ``q(z)``. - -There are multiple approaches to take in this case, one of which is **variational inference (VI)**. - -# Variational Inference (VI) - -In VI, we're looking to approximate ``p(z \mid \\{ x_i \\}_{i = 1}^n )`` using some _approximate_ or _variational_ posterior ``q(z)``. - -To approximate something you need a notion of what "close" means. In the context of probability densities a standard such "measure" of closeness is the _Kullback-Leibler (KL) divergence_ , though this is far from the only one. The KL-divergence is defined between two densities ``q(z)`` and ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` as - -```{.cell-bg} -\begin{align*} - \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \int \log \left( \frac{q(z)}{\prod\_{i = 1}^n p(z \mid x\_i)} \right) q(z) \mathrm{d}{z} \\\\ - &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) - \sum\_{i = 1}^n \log p(z \mid x\_i) \right] \\\\ - &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(z \mid x\_i) \right]. -\end{align*} -``` - -It's worth noting that unfortunately the KL-divergence is _not_ a metric/distance in the analysis-sense due to its lack of symmetry. On the other hand, it turns out that minimizing the KL-divergence that it's actually equivalent to maximizing the log-likelihood! Also, under reasonable restrictions on the densities at hand, - -```{.cell-bg} -\mathrm{D\_{KL}}\left(q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = 0 \quad \iff \quad q(z) = p(z \mid \\{ x\_i \\}\_{i = 1}^n), \quad \forall z. -``` - -Therefore one could (and we will) attempt to approximate ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` using a density ``q(z)`` by minimizing the KL-divergence between these two! - -One can also show that ``\mathrm{D_{KL}} \ge 0``, which we'll need later. Finally notice that the KL-divergence is only well-defined when in fact ``q(z)`` is zero everywhere ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` is zero, i.e. - -```{.cell-bg} -\mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right). -``` - -Otherwise, there might be a point ``z_0 \sim q(z)`` such that ``p(z_0 \mid \\{ x_i \\}_{i = 1}^n) = 0``, resulting in ``\log\left(\frac{q(z)}{0}\right)`` which doesn't make sense! - -One major problem: as we can see in the definition of the KL-divergence, we need ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` for any ``z`` if we want to compute the KL-divergence between this and ``q(z)``. We don't have that. The entire reason we even do Bayesian inference is that we don't know the posterior! Cleary this isn't going to work. _Or is it?!_ - -## Computing KL-divergence without knowing the posterior - -First off, recall that - -```{.cell-bg} -p(z \mid x\_i) = \frac{p(x\_i, z)}{p(x\_i)} -``` - -so we can write - -```{.cell-bg} -\begin{align*} -\mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) - \log p(x\_i) \right] \\\\ - &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] + \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x_i) \right] \\\\ - &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] + \sum\_{i = 1}^n \log p(x\_i), -\end{align*} -``` - -where in the last equality we used the fact that ``p(x_i)`` is independent of ``z``. - -Now you're probably thinking "Oh great! Now you've introduced ``p(x_i)`` which we _also_ can't compute (in general)!". Woah. Calm down human. Let's do some more algebra. The above expression can be rearranged to - -```{.cell-bg} -\mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) + \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right]}\_{=: \mathrm{ELBO}(q)} = \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i) \right]}\_{\text{constant}}. -``` - -See? The left-hand side is _constant_ and, as we mentioned before, ``\mathrm{D_{KL}} \ge 0``. What happens if we try to _maximize_ the term we just gave the completely arbitrary name ``\mathrm{ELBO}``? Well, if ``\mathrm{ELBO}`` goes up while ``p(x_i)`` stays constant then ``\mathrm{D_{KL}}`` _has to_ go down! That is, the ``q(z)`` which _minimizes_ the KL-divergence is the same ``q(z)`` which _maximizes_ ``\mathrm{ELBO}(q)``: - -```{.cell-bg} -\underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = \underset{q}{\mathrm{argmax}} \ \mathrm{ELBO}(q) -``` - -where - -```{.cell-bg} -\begin{align*} -\mathrm{ELBO}(q) &:= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] \\\\ - &= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) + \mathbb{H}\left( q(z) \right) -\end{align*} -``` - -and ``\mathbb{H} \left(q(z) \right)`` denotes the [(differential) entropy](https://www.wikiwand.com/en/Differential_entropy) of ``q(z)``. - -Assuming joint ``p(x_i, z)`` and the entropy ``\mathbb{H}\left(q(z)\right)`` are both tractable, we can use a Monte-Carlo for the remaining expectation. This leaves us with the following tractable expression - -```{.cell-bg} -\underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) \approx \underset{q}{\mathrm{argmax}} \ \widehat{\mathrm{ELBO}}(q) -``` - -where - -```{.cell-bg} -\widehat{\mathrm{ELBO}}(q) = \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \log p(x\_i, z\_k) \right) + \mathbb{H} \left(q(z)\right) \quad \text{where} \quad z\_k \sim q(z) \quad \forall k = 1, \dots, m. -``` - -Hence, as long as we can sample from ``q(z)`` somewhat efficiently, we can indeed minimize the KL-divergence! Neat, eh? - -Sidenote: in the case where ``q(z)`` is tractable but ``\mathbb{H} \left(q(z) \right)`` is _not_ , we can use an Monte-Carlo estimate for this term too but this generally results in a higher-variance estimate. - -Also, I fooled you real good: the ELBO _isn't_ an arbitrary name, hah! In fact it's an abbreviation for the **expected lower bound (ELBO)** because it, uhmm, well, it's the _expected_ lower bound (remember ``\mathrm{D_{KL}} \ge 0``). Yup. - -## Maximizing the ELBO - -Finding the optimal ``q`` over _all_ possible densities of course isn't feasible. Instead we consider a family of _parameterized_ densities ``\mathscr{D}\_{\Theta}`` where ``\Theta`` denotes the space of possible parameters. Each density in this family ``q\_{\theta} \in \mathscr{D}\_{\Theta}`` is parameterized by a unique ``\theta \in \Theta``. Moreover, we'll assume - - 1. ``q\_{\theta}(z)``, i.e. evaluating the probability density ``q`` at any point ``z``, is differentiable - 2. ``z \sim q\_{\theta}(z)``, i.e. the process of sampling from ``q\_{\theta}(z)``, is differentiable - -(1) is fairly straight-forward, but (2) is a bit tricky. What does it even mean for a _sampling process_ to be differentiable? This is quite an interesting problem in its own right and would require something like a [50-page paper to properly review the different approaches (highly recommended read)](https://arxiv.org/abs/1906.10652). - -We're going to make use of a particular such approach which goes under a bunch of different names: _reparametrization trick_, _path derivative_, etc. This refers to making the assumption that all elements ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` can be considered as reparameterizations of some base density, say ``\bar{q}(z)``. That is, if ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` then - -```{.cell-bg} -z \sim q\_{\theta}(z) \quad \iff \quad z := g\_{\theta}(\tilde{z}) \quad \text{where} \quad \bar{z} \sim \bar{q}(z) -``` - -for some function ``g\_{\theta}`` differentiable wrt. ``\theta``. So all ``q_{\theta} \in \mathscr{Q}\_{\Theta}`` are using the *same* reparameterization-function ``g`` but each ``q\_{\theta}`` correspond to different choices of ``\theta`` for ``f\_{\theta}``. - -Under this assumption we can differentiate the sampling process by taking the derivative of ``g\_{\theta}`` wrt. ``\theta``, and thus we can differentiate the entire ``\widehat{\mathrm{ELBO}}(q\_{\theta})`` wrt. ``\theta``! With the gradient available we can either try to solve for optimality either by setting the gradient equal to zero or maximize ``\widehat{\mathrm{ELBO}}(q\_{\theta})`` stepwise by traversing ``\mathscr{Q}\_{\Theta}`` in the direction of steepest ascent. For the sake of generality, we're going to go with the stepwise approach. - -With all this nailed down, we eventually reach the section on **Automatic Differentiation Variational Inference (ADVI)**. - -## Automatic Differentiation Variational Inference (ADVI) - -So let's revisit the assumptions we've made at this point: - - 1. The variational posterior ``q\_{\theta}`` is in a parameterized family of densities denoted ``\mathscr{Q}\_{\Theta}``, with ``\theta \in \Theta``. - - 2. ``\mathscr{Q}\_{\Theta}`` is a space of _reparameterizable_ densities with ``\bar{q}(z)`` as the base-density. - - 3. The parameterization function ``g\_{\theta}`` is differentiable wrt. ``\theta``. - - 4. Evaluation of the probability density ``q\_{\theta}(z)`` is differentiable wrt. ``\theta``. - - 5. ``\mathbb{H}\left(q\_{\theta}(z)\right)`` is tractable. - - 6. Evaluation of the joint density ``p(x, z)`` is tractable and differentiable wrt. ``z`` - - 7. The support of ``q(z)`` is a subspace of the support of ``p(z \mid x)`` : ``\mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right)``. - -All of these are not *necessary* to do VI, but they are very convenient and results in a fairly flexible approach. One distribution which has a density satisfying all of the above assumptions _except_ (7) (we'll get back to this in second) for any tractable and differentiable ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` is the good ole' Gaussian/normal distribution: - -```{.cell-bg} -z \sim \mathcal{N}(\mu, \Sigma) \quad \iff \quad z = g\_{\mu, L}(\bar{z}) := \mu + L^T \tilde{z} \quad \text{where} \quad \bar{z} \sim \bar{q}(z) := \mathcal{N}(1\_d, I\_{d \times d}) -``` - -where ``\Sigma = L L^T,`` with ``L`` obtained from the Cholesky-decomposition. Abusing notation a bit, we're going to write - -```{.cell-bg} -\theta = (\mu, \Sigma) := (\mu\_1, \dots, \mu\_d, L\_{11}, \dots, L\_{1, d}, L\_{2, 1}, \dots, L\_{2, d}, \dots, L\_{d, 1}, \dots, L\_{d, d}). -``` - -With this assumption we finally have a tractable expression for ``\widehat{\mathrm{ELBO}}(q_{\mu, \Sigma})``! Well, assuming (7) is holds. Since a Gaussian has non-zero probability on the entirety of ``\mathbb{R}^d``, we also require ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` to have non-zero probability on all of ``\mathbb{R}^d``. - -Though not necessary, we'll often make a *mean-field* assumption for the variational posterior ``q(z)``, i.e. assume independence between the latent variables. In this case, we'll write - -```{.cell-bg} -\theta = (\mu, \sigma^2) := (\mu\_1, \dots, \mu\_d, \sigma\_1^2, \dots, \sigma\_d^2). -``` - -### Examples - -As a (trivial) example we could apply the approach described above to is the following generative model for ``p(z \mid \\{ x_i \\}\_{i = 1}^n)``: - -```{.cell-bg} -\begin{align*} - m &\sim \mathcal{N}(0, 1) \\\\ - x\_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, 1), \quad i = 1, \dots, n. -\end{align*} -``` - -In this case ``z = m`` and we have the posterior defined ``p(m \mid \\{ x\_i \\}\_{i = 1}^n) = p(m) \prod\_{i = 1}^n p(x\_i \mid m)``. Then the variational posterior would be - -```{.cell-bg} -q\_{\mu, \sigma} = \mathcal{N}(\mu, \sigma^2), \quad \text{where} \quad \mu \in \mathbb{R}, \ \sigma^2 \in \mathbb{R}^{ + }. -``` - -And since prior of ``m``, ``\mathcal{N}(0, 1)``, has non-zero probability on the entirety of ``\mathbb{R}``, same as ``q(m)``, i.e. assumption (7) above holds, everything is fine and life is good. - -But what about this generative model for ``p(z \mid \\{ x_i \\}_{i = 1}^n)``: - -```{.cell-bg} -\begin{align*} - s &\sim \mathrm{InverseGamma}(2, 3), \\\\ - m &\sim \mathcal{N}(0, s), \\\\ - x\_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, s), \quad i = 1, \dots, n, -\end{align*} -``` - -with posterior ``p(s, m \mid \\{ x\_i \\}\_{i = 1}^n) = p(s) p(m \mid s) \prod\_{i = 1}^n p(x\_i \mid s, m)`` and the mean-field variational posterior ``q(s, m)`` will be - -```{.cell-bg} -q\_{\mu\_1, \mu\_2, \sigma\_1^2, \sigma\_2^2}(s, m) = p\_{\mathcal{N}(\mu\_1, \sigma\_1^2)}(s)\ p\_{\mathcal{N}(\mu\_2, \sigma\_2^2)}(m), -``` - -where we've denoted the evaluation of the probability density of a Gaussian as ``p_{\mathcal{N}(\mu, \sigma^2)}(x)``. - -Observe that ``\mathrm{InverseGamma}(2, 3)`` has non-zero probability only on ``\mathbb{R}^{ + } := (0, \infty)`` which is clearly not all of ``\mathbb{R}`` like ``q(s, m)`` has, i.e. - -```{.cell-bg} -\mathrm{supp} \left( q(s, m) \right) \not\subseteq \mathrm{supp} \left( p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right). -``` - -Recall from the definition of the KL-divergence that when this is the case, the KL-divergence isn't well defined. This gets us to the *automatic* part of ADVI. - -### "Automatic"? How? - -For a lot of the standard (continuous) densities ``p`` we can actually construct a probability density ``\tilde{p}`` with non-zero probability on all of ``\mathbb{R}`` by *transforming* the "constrained" probability density ``p`` to ``\tilde{p}``. In fact, in these cases this is a one-to-one relationship. As we'll see, this helps solve the support-issue we've been going on and on about. - -#### Transforming densities using change of variables - -If we want to compute the probability of ``x`` taking a value in some set ``A \subseteq \mathrm{supp} \left( p(x) \right)``, we have to integrate ``p(x)`` over ``A``, i.e. - -```{.cell-bg} -\mathbb{P}_p(x \in A) = \int_A p(x) \mathrm{d}x. -``` - -This means that if we have a differentiable bijection ``f: \mathrm{supp} \left( q(x) \right) \to \mathbb{R}^d`` with differentiable inverse ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(x) \right)``, we can perform a change of variables - -```{.cell-bg} -\mathbb{P}\_p(x \in A) = \int\_{f^{-1}(A)} p \left(f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| \mathrm{d}y, -``` - -where ``\mathcal{J}_{f^{-1}}(x)`` denotes the jacobian of ``f^{-1}`` evaluated at ``x``. Observe that this defines a probability distribution - -```{.cell-bg} -\mathbb{P}\_{\tilde{p}}\left(y \in f^{-1}(A) \right) = \int\_{f^{-1}(A)} \tilde{p}(y) \mathrm{d}y, -``` - -since ``f^{-1}\left(\mathrm{supp} (p(x)) \right) = \mathbb{R}^d`` which has probability 1. This probability distribution has *density* ``\tilde{p}(y)`` with ``\mathrm{supp} \left( \tilde{p}(y) \right) = \mathbb{R}^d``, defined - -```{.cell-bg} -\tilde{p}(y) = p \left( f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| -``` - -or equivalently - -```{.cell-bg} -\tilde{p} \left( f(x) \right) = \frac{p(x)}{\big| \det \mathcal{J}\_{f}(x) \big|} -``` - -due to the fact that - -```{.cell-bg} -\big| \det \mathcal{J}\_{f^{-1}}(y) \big| = \big| \det \mathcal{J}\_{f}(x) \big|^{-1} -``` - -*Note: it's also necessary that the log-abs-det-jacobian term is non-vanishing. This can for example be accomplished by assuming ``f`` to also be elementwise monotonic.* - -#### Back to VI - -So why is this is useful? Well, we're looking to generalize our approach using a normal distribution to cases where the supports don't match up. How about defining ``q(z)`` by - -```{.cell-bg} -\begin{align*} - \eta &\sim \mathcal{N}(\mu, \Sigma), \\\\ - z &= f^{-1}(\eta), -\end{align*} -``` - -where ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(z \mid x) \right)`` is a differentiable bijection with differentiable inverse. Then ``z \sim q_{\mu, \Sigma}(z) \implies z \in \mathrm{supp} \left( p(z \mid x) \right)`` as we wanted. The resulting variational density is - -```{.cell-bg} -q\_{\mu, \Sigma}(z) = p\_{\mathcal{N}(\mu, \Sigma)}\left( f(z) \right) \ \big| \det \mathcal{J}\_{f}(z) \big|. -``` - -Note that the way we've constructed ``q(z)`` here is basically a reverse of the approach we described above. Here we sample from a distribution with support on ``\mathbb{R}`` and transform *to* ``\mathrm{supp} \left( p(z \mid x) \right)``. - -If we want to write the ELBO explicitly in terms of ``\eta`` rather than ``z``, the first term in the ELBO becomes - -```{.cell-bg} -\begin{align*} - \mathbb{E}\_{z \sim q_{\mu, \Sigma}(z)} \left[ \log p(x\_i, z) \right] &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \Bigg[ \log \frac{p\left(x\_i, f^{-1}(\eta) \right)}{\big| \det \mathcal{J}_{f^{-1}}(\eta) \big|} \Bigg] \\\\ - &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \log p\left(x\_i, f^{-1}(\eta) \right) \right] - \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \left| \det \mathcal{J}\_{f^{-1}}(\eta) \right| \right]. -\end{align*} -``` - -The entropy is invariant under change of variables, thus ``\mathbb{H} \left(q\_{\mu, \Sigma}(z)\right)`` is simply the entropy of the normal distribution which is known analytically. - -Hence, the resulting empirical estimate of the ELBO is - -```{.cell-bg} -\begin{align*} -\widehat{\mathrm{ELBO}}(q\_{\mu, \Sigma}) &= \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \left(\log p\left(x\_i, f^{-1}(\eta_k)\right) - \log \big| \det \mathcal{J}\_{f^{-1}}(\eta\_k) \big| \right) \right) + \mathbb{H} \left(p\_{\mathcal{N}(\mu, \Sigma)}(z)\right) \\\\ -& \text{where} \quad z\_k \sim \mathcal{N}(\mu, \Sigma) \quad \forall k = 1, \dots, m -\end{align*}. -``` - -And maximizing this wrt. ``\mu`` and ``\Sigma`` is what's referred to as **Automatic Differentiation Variational Inference (ADVI)**! - +--- +title: Variational Inference +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +# Overview + +In this post we'll have a look at what's known as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods. In particular, we will focus on one of the more standard VI methods called **Automatic Differentiation Variational Inference (ADVI)**. + +Here we'll have a look at the theory behind VI, but if you're interested in how to use ADVI in Turing.jl, [check out this tutorial](../../tutorials/09-variational-inference). + +# Motivation + +In Bayesian inference one usually specifies a model as follows: given data ``\\{x_i\\}_{i = 1}^n``, + +```{.cell-bg} +\begin{align*} + \text{prior:} \quad z &\sim p(z) \\\\ + \text{likelihood:} \quad x_i &\overset{\text{i.i.d.}}{\sim} p(x \mid z) \quad \text{where} \quad i = 1, \dots, n +\end{align*} +``` + +where ``\overset{\text{i.i.d.}}{\sim}`` denotes that the samples are identically independently distributed. Our goal in Bayesian inference is then to find the _posterior_ + +```{.cell-bg} +p(z \mid \\{ x\_i \\}\_{i = 1}^n) \propto p(z) \prod\_{i=1}^{n} p(x\_i \mid z). +``` + +In general one cannot obtain a closed form expression for ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)``, but one might still be able to _sample_ from ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` with guarantees of converging to the target posterior ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` as the number of samples go to ``\infty``, e.g. MCMC. + +As you are hopefully already aware, Turing.jl provides a lot of different methods with asymptotic exactness guarantees that we can apply to such a problem! + +Unfortunately, these unbiased samplers can be prohibitively expensive to run. As the model ``p`` increases in complexity, the convergence of these unbiased samplers can slow down dramatically. Still, in the _infinite_ limit, these methods should converge to the true posterior! But infinity is fairly large, like, _at least_ more than 12, so this might take a while. + +In such a case it might be desirable to sacrifice some of these asymptotic guarantees, and instead _approximate_ the posterior ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` using some other model which we'll denote ``q(z)``. + +There are multiple approaches to take in this case, one of which is **variational inference (VI)**. + +# Variational Inference (VI) + +In VI, we're looking to approximate ``p(z \mid \\{ x_i \\}_{i = 1}^n )`` using some _approximate_ or _variational_ posterior ``q(z)``. + +To approximate something you need a notion of what "close" means. In the context of probability densities a standard such "measure" of closeness is the _Kullback-Leibler (KL) divergence_ , though this is far from the only one. The KL-divergence is defined between two densities ``q(z)`` and ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` as + +```{.cell-bg} +\begin{align*} + \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \int \log \left( \frac{q(z)}{\prod\_{i = 1}^n p(z \mid x\_i)} \right) q(z) \mathrm{d}{z} \\\\ + &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) - \sum\_{i = 1}^n \log p(z \mid x\_i) \right] \\\\ + &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(z \mid x\_i) \right]. +\end{align*} +``` + +It's worth noting that unfortunately the KL-divergence is _not_ a metric/distance in the analysis-sense due to its lack of symmetry. On the other hand, it turns out that minimizing the KL-divergence that it's actually equivalent to maximizing the log-likelihood! Also, under reasonable restrictions on the densities at hand, + +```{.cell-bg} +\mathrm{D\_{KL}}\left(q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = 0 \quad \iff \quad q(z) = p(z \mid \\{ x\_i \\}\_{i = 1}^n), \quad \forall z. +``` + +Therefore one could (and we will) attempt to approximate ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` using a density ``q(z)`` by minimizing the KL-divergence between these two! + +One can also show that ``\mathrm{D_{KL}} \ge 0``, which we'll need later. Finally notice that the KL-divergence is only well-defined when in fact ``q(z)`` is zero everywhere ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` is zero, i.e. + +```{.cell-bg} +\mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right). +``` + +Otherwise, there might be a point ``z_0 \sim q(z)`` such that ``p(z_0 \mid \\{ x_i \\}_{i = 1}^n) = 0``, resulting in ``\log\left(\frac{q(z)}{0}\right)`` which doesn't make sense! + +One major problem: as we can see in the definition of the KL-divergence, we need ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` for any ``z`` if we want to compute the KL-divergence between this and ``q(z)``. We don't have that. The entire reason we even do Bayesian inference is that we don't know the posterior! Cleary this isn't going to work. _Or is it?!_ + +## Computing KL-divergence without knowing the posterior + +First off, recall that + +```{.cell-bg} +p(z \mid x\_i) = \frac{p(x\_i, z)}{p(x\_i)} +``` + +so we can write + +```{.cell-bg} +\begin{align*} +\mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) - \log p(x\_i) \right] \\\\ + &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] + \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x_i) \right] \\\\ + &= \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] - \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] + \sum\_{i = 1}^n \log p(x\_i), +\end{align*} +``` + +where in the last equality we used the fact that ``p(x_i)`` is independent of ``z``. + +Now you're probably thinking "Oh great! Now you've introduced ``p(x_i)`` which we _also_ can't compute (in general)!". Woah. Calm down human. Let's do some more algebra. The above expression can be rearranged to + +```{.cell-bg} +\mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) + \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right]}\_{=: \mathrm{ELBO}(q)} = \underbrace{\sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i) \right]}\_{\text{constant}}. +``` + +See? The left-hand side is _constant_ and, as we mentioned before, ``\mathrm{D_{KL}} \ge 0``. What happens if we try to _maximize_ the term we just gave the completely arbitrary name ``\mathrm{ELBO}``? Well, if ``\mathrm{ELBO}`` goes up while ``p(x_i)`` stays constant then ``\mathrm{D_{KL}}`` _has to_ go down! That is, the ``q(z)`` which _minimizes_ the KL-divergence is the same ``q(z)`` which _maximizes_ ``\mathrm{ELBO}(q)``: + +```{.cell-bg} +\underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) = \underset{q}{\mathrm{argmax}} \ \mathrm{ELBO}(q) +``` + +where + +```{.cell-bg} +\begin{align*} +\mathrm{ELBO}(q) &:= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) - \mathbb{E}\_{z \sim q(z)} \left[ \log q(z) \right] \\\\ + &= \left( \sum\_{i = 1}^n \mathbb{E}\_{z \sim q(z)} \left[ \log p(x\_i, z) \right] \right) + \mathbb{H}\left( q(z) \right) +\end{align*} +``` + +and ``\mathbb{H} \left(q(z) \right)`` denotes the [(differential) entropy](https://www.wikiwand.com/en/Differential_entropy) of ``q(z)``. + +Assuming joint ``p(x_i, z)`` and the entropy ``\mathbb{H}\left(q(z)\right)`` are both tractable, we can use a Monte-Carlo for the remaining expectation. This leaves us with the following tractable expression + +```{.cell-bg} +\underset{q}{\mathrm{argmin}} \ \mathrm{D\_{KL}} \left( q(z), p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right) \approx \underset{q}{\mathrm{argmax}} \ \widehat{\mathrm{ELBO}}(q) +``` + +where + +```{.cell-bg} +\widehat{\mathrm{ELBO}}(q) = \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \log p(x\_i, z\_k) \right) + \mathbb{H} \left(q(z)\right) \quad \text{where} \quad z\_k \sim q(z) \quad \forall k = 1, \dots, m. +``` + +Hence, as long as we can sample from ``q(z)`` somewhat efficiently, we can indeed minimize the KL-divergence! Neat, eh? + +Sidenote: in the case where ``q(z)`` is tractable but ``\mathbb{H} \left(q(z) \right)`` is _not_ , we can use an Monte-Carlo estimate for this term too but this generally results in a higher-variance estimate. + +Also, I fooled you real good: the ELBO _isn't_ an arbitrary name, hah! In fact it's an abbreviation for the **expected lower bound (ELBO)** because it, uhmm, well, it's the _expected_ lower bound (remember ``\mathrm{D_{KL}} \ge 0``). Yup. + +## Maximizing the ELBO + +Finding the optimal ``q`` over _all_ possible densities of course isn't feasible. Instead we consider a family of _parameterized_ densities ``\mathscr{D}\_{\Theta}`` where ``\Theta`` denotes the space of possible parameters. Each density in this family ``q\_{\theta} \in \mathscr{D}\_{\Theta}`` is parameterized by a unique ``\theta \in \Theta``. Moreover, we'll assume + + 1. ``q\_{\theta}(z)``, i.e. evaluating the probability density ``q`` at any point ``z``, is differentiable + 2. ``z \sim q\_{\theta}(z)``, i.e. the process of sampling from ``q\_{\theta}(z)``, is differentiable + +(1) is fairly straight-forward, but (2) is a bit tricky. What does it even mean for a _sampling process_ to be differentiable? This is quite an interesting problem in its own right and would require something like a [50-page paper to properly review the different approaches (highly recommended read)](https://arxiv.org/abs/1906.10652). + +We're going to make use of a particular such approach which goes under a bunch of different names: _reparametrization trick_, _path derivative_, etc. This refers to making the assumption that all elements ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` can be considered as reparameterizations of some base density, say ``\bar{q}(z)``. That is, if ``q\_{\theta} \in \mathscr{Q}\_{\Theta}`` then + +```{.cell-bg} +z \sim q\_{\theta}(z) \quad \iff \quad z := g\_{\theta}(\tilde{z}) \quad \text{where} \quad \bar{z} \sim \bar{q}(z) +``` + +for some function ``g\_{\theta}`` differentiable wrt. ``\theta``. So all ``q_{\theta} \in \mathscr{Q}\_{\Theta}`` are using the *same* reparameterization-function ``g`` but each ``q\_{\theta}`` correspond to different choices of ``\theta`` for ``f\_{\theta}``. + +Under this assumption we can differentiate the sampling process by taking the derivative of ``g\_{\theta}`` wrt. ``\theta``, and thus we can differentiate the entire ``\widehat{\mathrm{ELBO}}(q\_{\theta})`` wrt. ``\theta``! With the gradient available we can either try to solve for optimality either by setting the gradient equal to zero or maximize ``\widehat{\mathrm{ELBO}}(q\_{\theta})`` stepwise by traversing ``\mathscr{Q}\_{\Theta}`` in the direction of steepest ascent. For the sake of generality, we're going to go with the stepwise approach. + +With all this nailed down, we eventually reach the section on **Automatic Differentiation Variational Inference (ADVI)**. + +## Automatic Differentiation Variational Inference (ADVI) + +So let's revisit the assumptions we've made at this point: + + 1. The variational posterior ``q\_{\theta}`` is in a parameterized family of densities denoted ``\mathscr{Q}\_{\Theta}``, with ``\theta \in \Theta``. + + 2. ``\mathscr{Q}\_{\Theta}`` is a space of _reparameterizable_ densities with ``\bar{q}(z)`` as the base-density. + + 3. The parameterization function ``g\_{\theta}`` is differentiable wrt. ``\theta``. + + 4. Evaluation of the probability density ``q\_{\theta}(z)`` is differentiable wrt. ``\theta``. + + 5. ``\mathbb{H}\left(q\_{\theta}(z)\right)`` is tractable. + + 6. Evaluation of the joint density ``p(x, z)`` is tractable and differentiable wrt. ``z`` + + 7. The support of ``q(z)`` is a subspace of the support of ``p(z \mid x)`` : ``\mathrm{supp}\left(q(z)\right) \subseteq \mathrm{supp}\left(p(z \mid x)\right)``. + +All of these are not *necessary* to do VI, but they are very convenient and results in a fairly flexible approach. One distribution which has a density satisfying all of the above assumptions _except_ (7) (we'll get back to this in second) for any tractable and differentiable ``p(z \mid \\{ x\_i \\}\_{i = 1}^n)`` is the good ole' Gaussian/normal distribution: + +```{.cell-bg} +z \sim \mathcal{N}(\mu, \Sigma) \quad \iff \quad z = g\_{\mu, L}(\bar{z}) := \mu + L^T \tilde{z} \quad \text{where} \quad \bar{z} \sim \bar{q}(z) := \mathcal{N}(1\_d, I\_{d \times d}) +``` + +where ``\Sigma = L L^T,`` with ``L`` obtained from the Cholesky-decomposition. Abusing notation a bit, we're going to write + +```{.cell-bg} +\theta = (\mu, \Sigma) := (\mu\_1, \dots, \mu\_d, L\_{11}, \dots, L\_{1, d}, L\_{2, 1}, \dots, L\_{2, d}, \dots, L\_{d, 1}, \dots, L\_{d, d}). +``` + +With this assumption we finally have a tractable expression for ``\widehat{\mathrm{ELBO}}(q_{\mu, \Sigma})``! Well, assuming (7) is holds. Since a Gaussian has non-zero probability on the entirety of ``\mathbb{R}^d``, we also require ``p(z \mid \\{ x_i \\}_{i = 1}^n)`` to have non-zero probability on all of ``\mathbb{R}^d``. + +Though not necessary, we'll often make a *mean-field* assumption for the variational posterior ``q(z)``, i.e. assume independence between the latent variables. In this case, we'll write + +```{.cell-bg} +\theta = (\mu, \sigma^2) := (\mu\_1, \dots, \mu\_d, \sigma\_1^2, \dots, \sigma\_d^2). +``` + +### Examples + +As a (trivial) example we could apply the approach described above to is the following generative model for ``p(z \mid \\{ x_i \\}\_{i = 1}^n)``: + +```{.cell-bg} +\begin{align*} + m &\sim \mathcal{N}(0, 1) \\\\ + x\_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, 1), \quad i = 1, \dots, n. +\end{align*} +``` + +In this case ``z = m`` and we have the posterior defined ``p(m \mid \\{ x\_i \\}\_{i = 1}^n) = p(m) \prod\_{i = 1}^n p(x\_i \mid m)``. Then the variational posterior would be + +```{.cell-bg} +q\_{\mu, \sigma} = \mathcal{N}(\mu, \sigma^2), \quad \text{where} \quad \mu \in \mathbb{R}, \ \sigma^2 \in \mathbb{R}^{ + }. +``` + +And since prior of ``m``, ``\mathcal{N}(0, 1)``, has non-zero probability on the entirety of ``\mathbb{R}``, same as ``q(m)``, i.e. assumption (7) above holds, everything is fine and life is good. + +But what about this generative model for ``p(z \mid \\{ x_i \\}_{i = 1}^n)``: + +```{.cell-bg} +\begin{align*} + s &\sim \mathrm{InverseGamma}(2, 3), \\\\ + m &\sim \mathcal{N}(0, s), \\\\ + x\_i &\overset{\text{i.i.d.}}{=} \mathcal{N}(m, s), \quad i = 1, \dots, n, +\end{align*} +``` + +with posterior ``p(s, m \mid \\{ x\_i \\}\_{i = 1}^n) = p(s) p(m \mid s) \prod\_{i = 1}^n p(x\_i \mid s, m)`` and the mean-field variational posterior ``q(s, m)`` will be + +```{.cell-bg} +q\_{\mu\_1, \mu\_2, \sigma\_1^2, \sigma\_2^2}(s, m) = p\_{\mathcal{N}(\mu\_1, \sigma\_1^2)}(s)\ p\_{\mathcal{N}(\mu\_2, \sigma\_2^2)}(m), +``` + +where we've denoted the evaluation of the probability density of a Gaussian as ``p_{\mathcal{N}(\mu, \sigma^2)}(x)``. + +Observe that ``\mathrm{InverseGamma}(2, 3)`` has non-zero probability only on ``\mathbb{R}^{ + } := (0, \infty)`` which is clearly not all of ``\mathbb{R}`` like ``q(s, m)`` has, i.e. + +```{.cell-bg} +\mathrm{supp} \left( q(s, m) \right) \not\subseteq \mathrm{supp} \left( p(z \mid \\{ x\_i \\}\_{i = 1}^n) \right). +``` + +Recall from the definition of the KL-divergence that when this is the case, the KL-divergence isn't well defined. This gets us to the *automatic* part of ADVI. + +### "Automatic"? How? + +For a lot of the standard (continuous) densities ``p`` we can actually construct a probability density ``\tilde{p}`` with non-zero probability on all of ``\mathbb{R}`` by *transforming* the "constrained" probability density ``p`` to ``\tilde{p}``. In fact, in these cases this is a one-to-one relationship. As we'll see, this helps solve the support-issue we've been going on and on about. + +#### Transforming densities using change of variables + +If we want to compute the probability of ``x`` taking a value in some set ``A \subseteq \mathrm{supp} \left( p(x) \right)``, we have to integrate ``p(x)`` over ``A``, i.e. + +```{.cell-bg} +\mathbb{P}_p(x \in A) = \int_A p(x) \mathrm{d}x. +``` + +This means that if we have a differentiable bijection ``f: \mathrm{supp} \left( q(x) \right) \to \mathbb{R}^d`` with differentiable inverse ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(x) \right)``, we can perform a change of variables + +```{.cell-bg} +\mathbb{P}\_p(x \in A) = \int\_{f^{-1}(A)} p \left(f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| \mathrm{d}y, +``` + +where ``\mathcal{J}_{f^{-1}}(x)`` denotes the jacobian of ``f^{-1}`` evaluated at ``x``. Observe that this defines a probability distribution + +```{.cell-bg} +\mathbb{P}\_{\tilde{p}}\left(y \in f^{-1}(A) \right) = \int\_{f^{-1}(A)} \tilde{p}(y) \mathrm{d}y, +``` + +since ``f^{-1}\left(\mathrm{supp} (p(x)) \right) = \mathbb{R}^d`` which has probability 1. This probability distribution has *density* ``\tilde{p}(y)`` with ``\mathrm{supp} \left( \tilde{p}(y) \right) = \mathbb{R}^d``, defined + +```{.cell-bg} +\tilde{p}(y) = p \left( f^{-1}(y) \right) \ \left| \det \mathcal{J}\_{f^{-1}}(y) \right| +``` + +or equivalently + +```{.cell-bg} +\tilde{p} \left( f(x) \right) = \frac{p(x)}{\big| \det \mathcal{J}\_{f}(x) \big|} +``` + +due to the fact that + +```{.cell-bg} +\big| \det \mathcal{J}\_{f^{-1}}(y) \big| = \big| \det \mathcal{J}\_{f}(x) \big|^{-1} +``` + +*Note: it's also necessary that the log-abs-det-jacobian term is non-vanishing. This can for example be accomplished by assuming ``f`` to also be elementwise monotonic.* + +#### Back to VI + +So why is this is useful? Well, we're looking to generalize our approach using a normal distribution to cases where the supports don't match up. How about defining ``q(z)`` by + +```{.cell-bg} +\begin{align*} + \eta &\sim \mathcal{N}(\mu, \Sigma), \\\\ + z &= f^{-1}(\eta), +\end{align*} +``` + +where ``f^{-1}: \mathbb{R}^d \to \mathrm{supp} \left( p(z \mid x) \right)`` is a differentiable bijection with differentiable inverse. Then ``z \sim q_{\mu, \Sigma}(z) \implies z \in \mathrm{supp} \left( p(z \mid x) \right)`` as we wanted. The resulting variational density is + +```{.cell-bg} +q\_{\mu, \Sigma}(z) = p\_{\mathcal{N}(\mu, \Sigma)}\left( f(z) \right) \ \big| \det \mathcal{J}\_{f}(z) \big|. +``` + +Note that the way we've constructed ``q(z)`` here is basically a reverse of the approach we described above. Here we sample from a distribution with support on ``\mathbb{R}`` and transform *to* ``\mathrm{supp} \left( p(z \mid x) \right)``. + +If we want to write the ELBO explicitly in terms of ``\eta`` rather than ``z``, the first term in the ELBO becomes + +```{.cell-bg} +\begin{align*} + \mathbb{E}\_{z \sim q_{\mu, \Sigma}(z)} \left[ \log p(x\_i, z) \right] &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \Bigg[ \log \frac{p\left(x\_i, f^{-1}(\eta) \right)}{\big| \det \mathcal{J}_{f^{-1}}(\eta) \big|} \Bigg] \\\\ + &= \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \log p\left(x\_i, f^{-1}(\eta) \right) \right] - \mathbb{E}\_{\eta \sim \mathcal{N}(\mu, \Sigma)} \left[ \left| \det \mathcal{J}\_{f^{-1}}(\eta) \right| \right]. +\end{align*} +``` + +The entropy is invariant under change of variables, thus ``\mathbb{H} \left(q\_{\mu, \Sigma}(z)\right)`` is simply the entropy of the normal distribution which is known analytically. + +Hence, the resulting empirical estimate of the ELBO is + +```{.cell-bg} +\begin{align*} +\widehat{\mathrm{ELBO}}(q\_{\mu, \Sigma}) &= \frac{1}{m} \left( \sum\_{k = 1}^m \sum\_{i = 1}^n \left(\log p\left(x\_i, f^{-1}(\eta_k)\right) - \log \big| \det \mathcal{J}\_{f^{-1}}(\eta\_k) \big| \right) \right) + \mathbb{H} \left(p\_{\mathcal{N}(\mu, \Sigma)}(z)\right) \\\\ +& \text{where} \quad z\_k \sim \mathcal{N}(\mu, \Sigma) \quad \forall k = 1, \dots, m +\end{align*}. +``` + +And maximizing this wrt. ``\mu`` and ``\Sigma`` is what's referred to as **Automatic Differentiation Variational Inference (ADVI)**! + Now if you want to try it out, [check out the tutorial on how to use ADVI in Turing.jl](../../tutorials/09-variational-inference)! \ No newline at end of file diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-09-using-turing-advanced/Project.toml b/tutorials/docs-09-using-turing-advanced/Project.toml old mode 100644 new mode 100755 index 60fac0188..e18510f8f --- a/tutorials/docs-09-using-turing-advanced/Project.toml +++ b/tutorials/docs-09-using-turing-advanced/Project.toml @@ -1,6 +1,6 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-09-using-turing-advanced/index.qmd b/tutorials/docs-09-using-turing-advanced/index.qmd old mode 100644 new mode 100755 index 7a3f475c9..dadcb6c5c --- a/tutorials/docs-09-using-turing-advanced/index.qmd +++ b/tutorials/docs-09-using-turing-advanced/index.qmd @@ -1,175 +1,244 @@ ---- -title: Advanced Usage -engine: julia ---- - -```{julia} -#| echo: false -using Distributions, Turing, Random, Bijectors -``` - -## How to Define a Customized Distribution - -`Turing.jl` supports the use of distributions from the Distributions.jl package. By extension, it also supports the use of customized distributions by defining them as subtypes of `Distribution` type of the Distributions.jl package, as well as corresponding functions. - -Below shows a workflow of how to define a customized distribution, using our own implementation of a simple `Uniform` distribution as a simple example. - -### 1. Define the Distribution Type - -First, define a type of the distribution, as a subtype of a corresponding distribution type in the Distributions.jl package. - -```{julia} -struct CustomUniform <: ContinuousUnivariateDistribution end -``` - -### 2. Implement Sampling and Evaluation of the log-pdf - -Second, define `rand` and `logpdf`, which will be used to run the model. - -```{julia} -# sample in [0, 1] -Distributions.rand(rng::AbstractRNG, d::CustomUniform) = rand(rng) - -# p(x) = 1 → logp(x) = 0 -Distributions.logpdf(d::CustomUniform, x::Real) = zero(x) -``` - -### 3. Define Helper Functions - -In most cases, it may be required to define some helper functions. - -#### 3.1 Domain Transformation - -Certain samplers, such as `HMC`, require the domain of the priors to be unbounded. Therefore, to use our `CustomUniform` as a prior in a model we also need to define how to transform samples from `[0, 1]` to `ℝ`. To do this, we simply need to define the corresponding `Bijector` from `Bijectors.jl`, which is what `Turing.jl` uses internally to deal with constrained distributions. - -To transform from `[0, 1]` to `ℝ` we can use the `Logit` bijector: - -```{julia} -Bijectors.bijector(d::CustomUniform) = Logit(0.0, 1.0) -``` - -You'd do the exact same thing for `ContinuousMultivariateDistribution` and `ContinuousMatrixDistribution`. For example, `Wishart` defines a distribution over positive-definite matrices and so `bijector` returns a `PDBijector` when called with a `Wishart` distribution as an argument. For discrete distributions, there is no need to define a bijector; the `Identity` bijector is used by default. - -Alternatively, for `UnivariateDistribution` we can define the `minimum` and `maximum` of the distribution - -```{julia} -Distributions.minimum(d::CustomUniform) = 0.0 -Distributions.maximum(d::CustomUniform) = 1.0 -``` - -and `Bijectors.jl` will return a default `Bijector` called `TruncatedBijector` which makes use of `minimum` and `maximum` derive the correct transformation. - -Internally, Turing basically does the following when it needs to convert a constrained distribution to an unconstrained distribution, e.g. when sampling using `HMC`: - -```{julia} -dist = Gamma(2,3) -b = bijector(dist) -transformed_dist = transformed(dist, b) # results in distribution with transformed support + correction for logpdf -``` - -and then we can call `rand` and `logpdf` as usual, where - -- `rand(transformed_dist)` returns a sample in the unconstrained space, and -- `logpdf(transformed_dist, y)` returns the log density of the original distribution, but with `y` living in the unconstrained space. - -To read more about Bijectors.jl, check out [the project README](https://github.com/TuringLang/Bijectors.jl). - -## Update the accumulated log probability in the model definition - -Turing accumulates log probabilities internally in an internal data structure that is accessible through -the internal variable `__varinfo__` inside of the model definition (see below for more details about model internals). -However, since users should not have to deal with internal data structures, a macro `Turing.@addlogprob!` is provided -that increases the accumulated log probability. For instance, this allows you to -[include arbitrary terms in the likelihood](https://github.com/TuringLang/Turing.jl/issues/1332) - -```{julia} -using Turing - -myloglikelihood(x, μ) = loglikelihood(Normal(μ, 1), x) - -@model function demo(x) - μ ~ Normal() - Turing.@addlogprob! myloglikelihood(x, μ) -end -``` - -and to [reject samples](https://github.com/TuringLang/Turing.jl/issues/1328): - -```{julia} -using Turing -using LinearAlgebra - -@model function demo(x) - m ~ MvNormal(zero(x), I) - if dot(m, x) < 0 - Turing.@addlogprob! -Inf - # Exit the model evaluation early - return nothing - end - - x ~ MvNormal(m, I) - return nothing -end -``` - -Note that `@addlogprob!` always increases the accumulated log probability, regardless of the provided sampling context. For instance, if you do not want to apply `Turing.@addlogprob!` when evaluating the prior of your model but only when computing the log likelihood and the log joint probability, then you should [check the type of the internal variable `__context_`](https://github.com/TuringLang/DynamicPPL.jl/issues/154) such as - -```{julia} -#| eval: false -if DynamicPPL.leafcontext(__context__) !== Turing.PriorContext() - Turing.@addlogprob! myloglikelihood(x, μ) -end -``` - -## Model Internals - -The `@model` macro accepts a function definition and rewrites it such that call of the function generates a `Model` struct for use by the sampler. -Models can be constructed by hand without the use of a macro. -Taking the `gdemo` model as an example, the macro-based definition - -```{julia} -using Turing - -@model function gdemo(x) - # Set priors. - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - - # Observe each value of x. - @. x ~ Normal(m, sqrt(s²)) -end - -model = gdemo([1.5, 2.0]) -``` - -can be implemented also (a bit less generally) with the macro-free version - -```{julia} -using Turing - -# Create the model function. -function gdemo(model, varinfo, context, x) - # Assume s² has an InverseGamma distribution. - s², varinfo = DynamicPPL.tilde_assume!!( - context, InverseGamma(2, 3), Turing.@varname(s²), varinfo - ) - - # Assume m has a Normal distribution. - m, varinfo = DynamicPPL.tilde_assume!!( - context, Normal(0, sqrt(s²)), Turing.@varname(m), varinfo - ) - - # Observe each value of x[i] according to a Normal distribution. - return DynamicPPL.dot_tilde_observe!!( - context, Normal(m, sqrt(s²)), x, Turing.@varname(x), varinfo - ) -end -gdemo(x) = Turing.Model(gdemo, (; x)) - -# Instantiate a Model object with our data variables. -model = gdemo([1.5, 2.0]) -``` - -## Task Copying - +--- +title: Advanced Usage +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +```{julia} +#| echo: false +using Distributions, Turing, Random, Bijectors +``` + +## How to Define a Customized Distribution + +`Turing.jl` supports the use of distributions from the Distributions.jl package. By extension, it also supports the use of customized distributions by defining them as subtypes of `Distribution` type of the Distributions.jl package, as well as corresponding functions. + +Below shows a workflow of how to define a customized distribution, using our own implementation of a simple `Uniform` distribution as a simple example. + +### 1. Define the Distribution Type + +First, define a type of the distribution, as a subtype of a corresponding distribution type in the Distributions.jl package. + +```{julia} +struct CustomUniform <: ContinuousUnivariateDistribution end +``` + +### 2. Implement Sampling and Evaluation of the log-pdf + +Second, define `rand` and `logpdf`, which will be used to run the model. + +```{julia} +# sample in [0, 1] +Distributions.rand(rng::AbstractRNG, d::CustomUniform) = rand(rng) + +# p(x) = 1 → logp(x) = 0 +Distributions.logpdf(d::CustomUniform, x::Real) = zero(x) +``` + +### 3. Define Helper Functions + +In most cases, it may be required to define some helper functions. + +#### 3.1 Domain Transformation + +Certain samplers, such as `HMC`, require the domain of the priors to be unbounded. Therefore, to use our `CustomUniform` as a prior in a model we also need to define how to transform samples from `[0, 1]` to `ℝ`. To do this, we simply need to define the corresponding `Bijector` from `Bijectors.jl`, which is what `Turing.jl` uses internally to deal with constrained distributions. + +To transform from `[0, 1]` to `ℝ` we can use the `Logit` bijector: + +```{julia} +Bijectors.bijector(d::CustomUniform) = Logit(0.0, 1.0) +``` + +You'd do the exact same thing for `ContinuousMultivariateDistribution` and `ContinuousMatrixDistribution`. For example, `Wishart` defines a distribution over positive-definite matrices and so `bijector` returns a `PDBijector` when called with a `Wishart` distribution as an argument. For discrete distributions, there is no need to define a bijector; the `Identity` bijector is used by default. + +Alternatively, for `UnivariateDistribution` we can define the `minimum` and `maximum` of the distribution + +```{julia} +Distributions.minimum(d::CustomUniform) = 0.0 +Distributions.maximum(d::CustomUniform) = 1.0 +``` + +and `Bijectors.jl` will return a default `Bijector` called `TruncatedBijector` which makes use of `minimum` and `maximum` derive the correct transformation. + +Internally, Turing basically does the following when it needs to convert a constrained distribution to an unconstrained distribution, e.g. when sampling using `HMC`: + +```{julia} +dist = Gamma(2,3) +b = bijector(dist) +transformed_dist = transformed(dist, b) # results in distribution with transformed support + correction for logpdf +``` + +and then we can call `rand` and `logpdf` as usual, where + + - `rand(transformed_dist)` returns a sample in the unconstrained space, and + - `logpdf(transformed_dist, y)` returns the log density of the original distribution, but with `y` living in the unconstrained space. + +To read more about Bijectors.jl, check out [the project README](https://github.com/TuringLang/Bijectors.jl). + +## Update the accumulated log probability in the model definition + +Turing accumulates log probabilities internally in an internal data structure that is accessible through +the internal variable `__varinfo__` inside of the model definition (see below for more details about model internals). +However, since users should not have to deal with internal data structures, a macro `Turing.@addlogprob!` is provided +that increases the accumulated log probability. For instance, this allows you to +[include arbitrary terms in the likelihood](https://github.com/TuringLang/Turing.jl/issues/1332) + +```{julia} +using Turing + +myloglikelihood(x, μ) = loglikelihood(Normal(μ, 1), x) + +@model function demo(x) + μ ~ Normal() + Turing.@addlogprob! myloglikelihood(x, μ) +end +``` + +and to [reject samples](https://github.com/TuringLang/Turing.jl/issues/1328): + +```{julia} +using Turing +using LinearAlgebra + +@model function demo(x) + m ~ MvNormal(zero(x), I) + if dot(m, x) < 0 + Turing.@addlogprob! -Inf + # Exit the model evaluation early + return nothing + end + + x ~ MvNormal(m, I) + return nothing +end +``` + +Note that `@addlogprob!` always increases the accumulated log probability, regardless of the provided +sampling context. For instance, if you do not want to apply `Turing.@addlogprob!` when evaluating the +prior of your model but only when computing the log likelihood and the log joint probability, then you +should [check the type of the internal variable `__context_`](https://github.com/TuringLang/DynamicPPL.jl/issues/154) +such as + +```{julia} +#| eval: false +if DynamicPPL.leafcontext(__context__) !== Turing.PriorContext() + Turing.@addlogprob! myloglikelihood(x, μ) +end +``` + +## Model Internals + +The `@model` macro accepts a function definition and rewrites it such that call of the function generates a `Model` struct for use by the sampler. +Models can be constructed by hand without the use of a macro. +Taking the `gdemo` model as an example, the macro-based definition + +```{julia} +using Turing + +@model function gdemo(x) + # Set priors. + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + + # Observe each value of x. + @. x ~ Normal(m, sqrt(s²)) +end + +model = gdemo([1.5, 2.0]) +``` + +can be implemented also (a bit less generally) with the macro-free version + +```{julia} +using Turing + +# Create the model function. +function gdemo(model, varinfo, context, x) + # Assume s² has an InverseGamma distribution. + s², varinfo = DynamicPPL.tilde_assume!!( + context, InverseGamma(2, 3), Turing.@varname(s²), varinfo + ) + + # Assume m has a Normal distribution. + m, varinfo = DynamicPPL.tilde_assume!!( + context, Normal(0, sqrt(s²)), Turing.@varname(m), varinfo + ) + + # Observe each value of x[i] according to a Normal distribution. + return DynamicPPL.dot_tilde_observe!!( + context, Normal(m, sqrt(s²)), x, Turing.@varname(x), varinfo + ) +end +gdemo(x) = Turing.Model(gdemo, (; x)) + +# Instantiate a Model object with our data variables. +model = gdemo([1.5, 2.0]) +``` + +### Reparametrization and generated_quantities + +Often, the most natural parameterization for a model is not the most computationally feasible. Consider the following +(efficiently reparametrized) implementation of Neal's funnel [(Neal, 2003)](https://arxiv.org/abs/physics/0009028): + +```{julia} +#| eval: false +@model function Neal() + # Raw draws + y_raw ~ Normal(0, 1) + x_raw ~ arraydist([Normal(0, 1) for i in 1:9]) + + # Transform: + y = 3 * y_raw + x = exp.(y ./ 2) .* x_raw + + # Return: + return [x; y] +end +``` + +In this case, the random variables exposed in the chain (`x_raw`, `y_raw`) are not in a helpful form — what we're after is the deterministically transformed variables `x, y`. + +More generally, there are often quantities in our models that we might be interested in viewing, but which are not explicitly present in our chain. + +We can generate draws from these variables — in this case, `x, y` — by adding them as a return statement to the model, and then calling `generated_quantities(model, chain)`. Calling this function outputs an array of values specified in the return statement of the model. + +For example, in the above reparametrization, we sample from our model: + +```{julia} +#| eval: false +chain = sample(Neal(), NUTS(), 1000) +``` + +and then call: + +```{julia} +#| eval: false +generated_quantities(Neal(), chain) +``` + +to return an array for each posterior sample containing `x1, x2, ... x9, y`. + +In this case, it might be useful to reorganize our output into a matrix for plotting: + +```{julia} +#| eval: false +reparam_chain = reduce(hcat, generated_quantities(Neal(), chain))' +``` + +Where we can recover a vector of our samples as follows: + +```{julia} +#| eval: false +x1_samples = reparam_chain[:, 1] +y_samples = reparam_chain[:, 10] +``` + +## Task Copying + Turing [copies](https://github.com/JuliaLang/julia/issues/4085) Julia tasks to deliver efficient inference algorithms, but it also provides alternative slower implementation as a fallback. Task copying is enabled by default. Task copying requires us to use the `TapedTask` facility which is provided by [Libtask](https://github.com/TuringLang/Libtask.jl) to create tasks. \ No newline at end of file diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-10-using-turing-autodiff/Project.toml b/tutorials/docs-10-using-turing-autodiff/Project.toml old mode 100644 new mode 100755 index bf112bd66..c2e032937 --- a/tutorials/docs-10-using-turing-autodiff/Project.toml +++ b/tutorials/docs-10-using-turing-autodiff/Project.toml @@ -1,3 +1,3 @@ -[deps] -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-10-using-turing-autodiff/index.qmd b/tutorials/docs-10-using-turing-autodiff/index.qmd old mode 100644 new mode 100755 index 250feb622..734a89ba0 --- a/tutorials/docs-10-using-turing-autodiff/index.qmd +++ b/tutorials/docs-10-using-turing-autodiff/index.qmd @@ -1,58 +1,65 @@ ---- -title: Automatic Differentiation -engine: julia ---- - -## Switching AD Modes - -Turing currently supports four automatic differentiation (AD) backends for sampling: [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD; and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl), [Zygote](https://github.com/FluxML/Zygote.jl), and [Tracker](https://github.com/FluxML/Tracker.jl) for reverse-mode AD. -While `Tracker` is still available, its use is discouraged due to a lack of active maintenance. -`ForwardDiff` is automatically imported by Turing. To utilize `Zygote` or `ReverseDiff` for AD, users must explicitly import them with `using Zygote` or `using ReverseDiff`, alongside `using Turing`. - -As of Turing version v0.30, the global configuration flag for the AD backend has been removed in favour of [`AdTypes.jl`](https://github.com/SciML/ADTypes.jl), allowing users to specify the AD backend for individual samplers independently. -Users can pass the `adtype` keyword argument to the sampler constructor to select the desired AD backend, with the default being `AutoForwardDiff(; chunksize=0)`. - -For `ForwardDiff`, pass `adtype=AutoForwardDiff(; chunksize)` to the sampler constructor. A `chunksize` of 0 permits the chunk size to be automatically determined. For more information regarding the selection of `chunksize`, please refer to [related section of `ForwardDiff`'s documentation](https://juliadiff.org/ForwardDiff.jl/dev/user/advanced/#Configuring-Chunk-Size). -For `ReverseDiff`, pass `adtype=AutoReverseDiff()` to the sampler constructor. An additional argument can be provided to `AutoReverseDiff` to specify whether to to compile the tape only once and cache it for later use (`false` by default, which means no caching tape). Be aware that the use of caching in certain types of models can lead to incorrect results and/or errors. - -Compiled tapes should only be used if you are absolutely certain that the computation doesn't change between different executions of your model. -Thus, e.g., in the model definition and all im- and explicitly called functions in the model all loops should be of fixed size, and `if`-statements should consistently execute the same branches. -For instance, `if`-statements with conditions that can be determined at compile time or conditions that depend only on the data will always execute the same branches during sampling (if the data is constant throughout sampling and, e.g., no mini-batching is used). -However, `if`-statements that depend on the model parameters can take different branches during sampling; hence, the compiled tape might be incorrect. -Thus you must not use compiled tapes when your model makes decisions based on the model parameters, and you should be careful if you compute functions of parameters that those functions do not have branching which might cause them to execute different code for different values of the parameter. - -For `Zygote`, pass `adtype=AutoZygote()` to the sampler constructor. - -And the previously used interface functions including `ADBackend`, `setadbackend`, `setsafe`, `setchunksize`, and `setrdcache` are deprecated and removed. - -## Compositional Sampling with Differing AD Modes - -Turing supports intermixed automatic differentiation methods for different variable spaces. The snippet below shows using `ForwardDiff` to sample the mean (`m`) parameter, and using `ReverseDiff` for the variance (`s`) parameter: - -```{julia} -using Turing -using ReverseDiff - -# Define a simple Normal model with unknown mean and variance. -@model function gdemo(x, y) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - x ~ Normal(m, sqrt(s²)) - return y ~ Normal(m, sqrt(s²)) -end - -# Sample using Gibbs and varying autodiff backends. -c = sample( - gdemo(1.5, 2), - Gibbs( - HMC(0.1, 5, :m; adtype=AutoForwardDiff(; chunksize=0)), - HMC(0.1, 5, :s²; adtype=AutoReverseDiff(false)), - ), - 1000, - progress=false, -) -``` - -Generally, reverse-mode AD, for instance `ReverseDiff`, is faster when sampling from variables of high dimensionality (greater than 20), while forward-mode AD, for instance `ForwardDiff`, is more efficient for lower-dimension variables. This functionality allows those who are performance sensitive to fine tune their automatic differentiation for their specific models. - +--- +title: Automatic Differentiation +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +## Switching AD Modes + +Turing currently supports four automatic differentiation (AD) backends for sampling: [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD; and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl), [Zygote](https://github.com/FluxML/Zygote.jl), and [Tracker](https://github.com/FluxML/Tracker.jl) for reverse-mode AD. +While `Tracker` is still available, its use is discouraged due to a lack of active maintenance. +`ForwardDiff` is automatically imported by Turing. To utilize `Zygote` or `ReverseDiff` for AD, users must explicitly import them with `using Zygote` or `using ReverseDiff`, alongside `using Turing`. + +As of Turing version v0.30, the global configuration flag for the AD backend has been removed in favour of [`AdTypes.jl`](https://github.com/SciML/ADTypes.jl), allowing users to specify the AD backend for individual samplers independently. +Users can pass the `adtype` keyword argument to the sampler constructor to select the desired AD backend, with the default being `AutoForwardDiff(; chunksize=0)`. + +For `ForwardDiff`, pass `adtype=AutoForwardDiff(; chunksize)` to the sampler constructor. A `chunksize` of 0 permits the chunk size to be automatically determined. For more information regarding the selection of `chunksize`, please refer to [related section of `ForwardDiff`'s documentation](https://juliadiff.org/ForwardDiff.jl/dev/user/advanced/#Configuring-Chunk-Size). +For `ReverseDiff`, pass `adtype=AutoReverseDiff()` to the sampler constructor. An additional argument can be provided to `AutoReverseDiff` to specify whether to to compile the tape only once and cache it for later use (`false` by default, which means no caching tape). Be aware that the use of caching in certain types of models can lead to incorrect results and/or errors. + +Compiled tapes should only be used if you are absolutely certain that the computation doesn't change between different executions of your model. +Thus, e.g., in the model definition and all im- and explicitly called functions in the model all loops should be of fixed size, and `if`-statements should consistently execute the same branches. +For instance, `if`-statements with conditions that can be determined at compile time or conditions that depend only on the data will always execute the same branches during sampling (if the data is constant throughout sampling and, e.g., no mini-batching is used). +However, `if`-statements that depend on the model parameters can take different branches during sampling; hence, the compiled tape might be incorrect. +Thus you must not use compiled tapes when your model makes decisions based on the model parameters, and you should be careful if you compute functions of parameters that those functions do not have branching which might cause them to execute different code for different values of the parameter. + +For `Zygote`, pass `adtype=AutoZygote()` to the sampler constructor. + +And the previously used interface functions including `ADBackend`, `setadbackend`, `setsafe`, `setchunksize`, and `setrdcache` are deprecated and removed. + +## Compositional Sampling with Differing AD Modes + +Turing supports intermixed automatic differentiation methods for different variable spaces. The snippet below shows using `ForwardDiff` to sample the mean (`m`) parameter, and using `ReverseDiff` for the variance (`s`) parameter: + +```{julia} +using Turing +using ReverseDiff + +# Define a simple Normal model with unknown mean and variance. +@model function gdemo(x, y) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + x ~ Normal(m, sqrt(s²)) + return y ~ Normal(m, sqrt(s²)) +end + +# Sample using Gibbs and varying autodiff backends. +c = sample( + gdemo(1.5, 2), + Gibbs( + HMC(0.1, 5, :m; adtype=AutoForwardDiff(; chunksize=0)), + HMC(0.1, 5, :s²; adtype=AutoReverseDiff(false)), + ), + 1000, + progress=false, +) +``` + +Generally, reverse-mode AD, for instance `ReverseDiff`, is faster when sampling from variables of high dimensionality (greater than 20), while forward-mode AD, for instance `ForwardDiff`, is more efficient for lower-dimension variables. This functionality allows those who are performance sensitive to fine tune their automatic differentiation for their specific models. + If the differentiation method is not specified in this way, Turing will default to using whatever the global AD backend is. Currently, this defaults to `ForwardDiff`. \ No newline at end of file diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-11-using-turing-dynamichmc/Project.toml b/tutorials/docs-11-using-turing-dynamichmc/Project.toml old mode 100644 new mode 100755 index ec82c32d5..780c1cc34 --- a/tutorials/docs-11-using-turing-dynamichmc/Project.toml +++ b/tutorials/docs-11-using-turing-dynamichmc/Project.toml @@ -1,3 +1,3 @@ -[deps] -DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-11-using-turing-dynamichmc/index.qmd b/tutorials/docs-11-using-turing-dynamichmc/index.qmd old mode 100644 new mode 100755 index 3b7cbe805..b16f68c19 --- a/tutorials/docs-11-using-turing-dynamichmc/index.qmd +++ b/tutorials/docs-11-using-turing-dynamichmc/index.qmd @@ -1,29 +1,36 @@ ---- -title: Using DynamicHMC -engine: julia ---- - -Turing supports the use of [DynamicHMC](https://github.com/tpapp/DynamicHMC.jl) as a sampler through the `DynamicNUTS` function. - -To use the `DynamicNUTS` function, you must import the `DynamicHMC` package as well as Turing. Turing does not formally require `DynamicHMC` but will include additional functionality if both packages are present. - -Here is a brief example: - -### How to apply `DynamicNUTS`: - -```{julia} -# Import Turing and DynamicHMC. -using DynamicHMC, Turing - -# Model definition. -@model function gdemo(x, y) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - x ~ Normal(m, sqrt(s²)) - return y ~ Normal(m, sqrt(s²)) -end - -# Pull 2,000 samples using DynamicNUTS. -dynamic_nuts = externalsampler(DynamicHMC.NUTS()) -chn = sample(gdemo(1.5, 2.0), dynamic_nuts, 2000, progress=false) +--- +title: Using DynamicHMC +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +Turing supports the use of [DynamicHMC](https://github.com/tpapp/DynamicHMC.jl) as a sampler through the `DynamicNUTS` function. + +To use the `DynamicNUTS` function, you must import the `DynamicHMC` package as well as Turing. Turing does not formally require `DynamicHMC` but will include additional functionality if both packages are present. + +Here is a brief example: + +### How to apply `DynamicNUTS`: + +```{julia} +# Import Turing and DynamicHMC. +using DynamicHMC, Turing + +# Model definition. +@model function gdemo(x, y) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + x ~ Normal(m, sqrt(s²)) + return y ~ Normal(m, sqrt(s²)) +end + +# Pull 2,000 samples using DynamicNUTS. +dynamic_nuts = externalsampler(DynamicHMC.NUTS()) +chn = sample(gdemo(1.5, 2.0), dynamic_nuts, 2000, progress=false) ``` \ No newline at end of file diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-12-using-turing-guide/Project.toml b/tutorials/docs-12-using-turing-guide/Project.toml old mode 100644 new mode 100755 index 6fdadab66..8f0177a9b --- a/tutorials/docs-12-using-turing-guide/Project.toml +++ b/tutorials/docs-12-using-turing-guide/Project.toml @@ -1,6 +1,6 @@ -[deps] -Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" -Optim = "429524aa-4258-5aef-a3af-852621145aeb" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" +Optim = "429524aa-4258-5aef-a3af-852621145aeb" +StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-12-using-turing-guide/index.qmd b/tutorials/docs-12-using-turing-guide/index.qmd old mode 100644 new mode 100755 index b2b369dab..2bfaf0dd4 --- a/tutorials/docs-12-using-turing-guide/index.qmd +++ b/tutorials/docs-12-using-turing-guide/index.qmd @@ -1,630 +1,637 @@ ---- -title: Guide -engine: julia ---- - -## Basics - -### Introduction - -A probabilistic program is Julia code wrapped in a `@model` macro. It can use arbitrary Julia code, but to ensure correctness of inference it should not have external effects or modify global state. Stack-allocated variables are safe, but mutable heap-allocated objects may lead to subtle bugs when using task copying. By default Libtask deepcopies `Array` and `Dict` objects when copying task to avoid bugs with data stored in mutable structure in Turing models. - -To specify distributions of random variables, Turing programs should use the `~` notation: - -`x ~ distr` where `x` is a symbol and `distr` is a distribution. If `x` is undefined in the model function, inside the probabilistic program, this puts a random variable named `x`, distributed according to `distr`, in the current scope. `distr` can be a value of any type that implements `rand(distr)`, which samples a value from the distribution `distr`. If `x` is defined, this is used for conditioning in a style similar to [Anglican](https://probprog.github.io/anglican/index.html) (another PPL). In this case, `x` is an observed value, assumed to have been drawn from the distribution `distr`. The likelihood is computed using `logpdf(distr,y)`. The observe statements should be arranged so that every possible run traverses all of them in exactly the same order. This is equivalent to demanding that they are not placed inside stochastic control flow. - -Available inference methods include Importance Sampling (IS), Sequential Monte Carlo (SMC), Particle Gibbs (PG), Hamiltonian Monte Carlo (HMC), Hamiltonian Monte Carlo with Dual Averaging (HMCDA) and The No-U-Turn Sampler (NUTS). - -### Simple Gaussian Demo - -Below is a simple Gaussian demo illustrate the basic usage of Turing.jl. - - -```{julia} -# Import packages. -using Turing -using StatsPlots - -# Define a simple Normal model with unknown mean and variance. -@model function gdemo(x, y) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - x ~ Normal(m, sqrt(s²)) - return y ~ Normal(m, sqrt(s²)) -end -``` - -Note: As a sanity check, the prior expectation of `s²` is `mean(InverseGamma(2, 3)) = 3/(2 - 1) = 3` and the prior expectation of `m` is 0. This can be easily checked using `Prior`: - -```{julia} -#| output: false -setprogress!(false) -``` - -```{julia} -p1 = sample(gdemo(missing, missing), Prior(), 100000) -``` - -We can perform inference by using the `sample` function, the first argument of which is our probabilistic program and the second of which is a sampler. More information on each sampler is located in the [API]({{< meta site-url >}}/library). - -```{julia} -# Run sampler, collect results. -c1 = sample(gdemo(1.5, 2), SMC(), 1000) -c2 = sample(gdemo(1.5, 2), PG(10), 1000) -c3 = sample(gdemo(1.5, 2), HMC(0.1, 5), 1000) -c4 = sample(gdemo(1.5, 2), Gibbs(PG(10, :m), HMC(0.1, 5, :s²)), 1000) -c5 = sample(gdemo(1.5, 2), HMCDA(0.15, 0.65), 1000) -c6 = sample(gdemo(1.5, 2), NUTS(0.65), 1000) -``` - -The `MCMCChains` module (which is re-exported by Turing) provides plotting tools for the `Chain` objects returned by a `sample` function. See the [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) repository for more information on the suite of tools available for diagnosing MCMC chains. - -```{julia} -#| eval: false -# Summarise results -describe(c3) - -# Plot results -plot(c3) -savefig("gdemo-plot.png") -``` - -The arguments for each sampler are: - - - SMC: number of particles. - - PG: number of particles, number of iterations. - - HMC: leapfrog step size, leapfrog step numbers. - - Gibbs: component sampler 1, component sampler 2, ... - - HMCDA: total leapfrog length, target accept ratio. - - NUTS: number of adaptation steps (optional), target accept ratio. - -For detailed information on the samplers, please review Turing.jl's [API]({{< meta site-url >}}/library) documentation. - -### Modelling Syntax Explained - -Using this syntax, a probabilistic model is defined in Turing. The model function generated by Turing can then be used to condition the model onto data. Subsequently, the sample function can be used to generate samples from the posterior distribution. - -In the following example, the defined model is conditioned to the data (arg*1 = 1, arg*2 = 2) by passing (1, 2) to the model function. - -```{julia} -#| eval: false -@model function model_name(arg_1, arg_2) - return ... -end -``` - -The conditioned model can then be passed onto the sample function to run posterior inference. - -```{julia} -#| eval: false -model_func = model_name(1, 2) -chn = sample(model_func, HMC(..)) # Perform inference by sampling using HMC. -``` - -The returned chain contains samples of the variables in the model. - -```{julia} -#| eval: false -var_1 = mean(chn[:var_1]) # Taking the mean of a variable named var_1. -``` - -The key (`:var_1`) can be a `Symbol` or a `String`. For example, to fetch `x[1]`, one can use `chn[Symbol("x[1]")]` or `chn["x[1]"]`. -If you want to retrieve all parameters associated with a specific symbol, you can use `group`. As an example, if you have the -parameters `"x[1]"`, `"x[2]"`, and `"x[3]"`, calling `group(chn, :x)` or `group(chn, "x")` will return a new chain with only `"x[1]"`, `"x[2]"`, and `"x[3]"`. - -Turing does not have a declarative form. More generally, the order in which you place the lines of a `@model` macro matters. For example, the following example works: - -```{julia} -# Define a simple Normal model with unknown mean and variance. -@model function model_function(y) - s ~ Poisson(1) - y ~ Normal(s, 1) - return y -end - -sample(model_function(10), SMC(), 100) -``` - -But if we switch the `s ~ Poisson(1)` and `y ~ Normal(s, 1)` lines, the model will no longer sample correctly: - -```{julia} -#| eval: false -# Define a simple Normal model with unknown mean and variance. -@model function model_function(y) - y ~ Normal(s, 1) - s ~ Poisson(1) - return y -end - -sample(model_function(10), SMC(), 100) -``` - -### Sampling Multiple Chains - -Turing supports distributed and threaded parallel sampling. To do so, call `sample(model, sampler, parallel_type, n, n_chains)`, where `parallel_type` can be either `MCMCThreads()` or `MCMCDistributed()` for thread and parallel sampling, respectively. - -Having multiple chains in the same object is valuable for evaluating convergence. Some diagnostic functions like `gelmandiag` require multiple chains. - -If you do not want parallelism or are on an older version Julia, you can sample multiple chains with the `mapreduce` function: - -```{julia} -#| eval: false -# Replace num_chains below with however many chains you wish to sample. -chains = mapreduce(c -> sample(model_fun, sampler, 1000), chainscat, 1:num_chains) -``` - -The `chains` variable now contains a `Chains` object which can be indexed by chain. To pull out the first chain from the `chains` object, use `chains[:,:,1]`. The method is the same if you use either of the below parallel sampling methods. - -#### Multithreaded sampling - -If you wish to perform multithreaded sampling and are running Julia 1.3 or greater, you can call `sample` with the following signature: - -```{julia} -#| eval: false -using Turing - -@model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end -end - -model = gdemo([1.5, 2.0]) - -# Sample four chains using multiple threads, each with 1000 samples. -sample(model, NUTS(), MCMCThreads(), 1000, 4) -``` - -Be aware that Turing cannot add threads for you -- you must have started your Julia instance with multiple threads to experience any kind of parallelism. See the [Julia documentation](https://docs.julialang.org/en/v1/manual/parallel-computing/#man-multithreading-1) for details on how to achieve this. - -#### Distributed sampling - -To perform distributed sampling (using multiple processes), you must first import `Distributed`. - -Process parallel sampling can be done like so: - -```{julia} -#| eval: false -# Load Distributed to add processes and the @everywhere macro. -using Distributed - -# Load Turing. -using Turing - -# Add four processes to use for sampling. -addprocs(4; exeflags="--project=$(Base.active_project())") - -# Initialize everything on all the processes. -# Note: Make sure to do this after you've already loaded Turing, -# so each process does not have to precompile. -# Parallel sampling may fail silently if you do not do this. -@everywhere using Turing - -# Define a model on all processes. -@everywhere @model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end -end - -# Declare the model instance everywhere. -@everywhere model = gdemo([1.5, 2.0]) - -# Sample four chains using multiple processes, each with 1000 samples. -sample(model, NUTS(), MCMCDistributed(), 1000, 4) -``` - -### Sampling from an Unconditional Distribution (The Prior) - -Turing allows you to sample from a declared model's prior. If you wish to draw a chain from the prior to inspect your prior distributions, you can simply run - -```{julia} -#| eval: false -chain = sample(model, Prior(), n_samples) -``` - -You can also run your model (as if it were a function) from the prior distribution, by calling the model without specifying inputs or a sampler. In the below example, we specify a `gdemo` model which returns two variables, `x` and `y`. The model includes `x` and `y` as arguments, but calling the function without passing in `x` or `y` means that Turing's compiler will assume they are missing values to draw from the relevant distribution. The `return` statement is necessary to retrieve the sampled `x` and `y` values. -Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. - -```{julia} -@model function gdemo(x, y) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - x ~ Normal(m, sqrt(s²)) - y ~ Normal(m, sqrt(s²)) - return x, y -end -``` - -Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. - -```{julia} -# Samples from p(x,y) -g_prior_sample = gdemo(missing, missing) -g_prior_sample() -``` - -### Sampling from a Conditional Distribution (The Posterior) - -#### Treating observations as random variables - -Inputs to the model that have a value `missing` are treated as parameters, aka random variables, to be estimated/sampled. This can be useful if you want to simulate draws for that parameter, or if you are sampling from a conditional distribution. Turing supports the following syntax: - -```{julia} -@model function gdemo(x, ::Type{T}=Float64) where {T} - if x === missing - # Initialize `x` if missing - x = Vector{T}(undef, 2) - end - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end -end - -# Construct a model with x = missing -model = gdemo(missing) -c = sample(model, HMC(0.01, 5), 500) -``` - -Note the need to initialize `x` when missing since we are iterating over its elements later in the model. The generated values for `x` can be extracted from the `Chains` object using `c[:x]`. - -Turing also supports mixed `missing` and non-`missing` values in `x`, where the missing ones will be treated as random variables to be sampled while the others get treated as observations. For example: - -```{julia} -@model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end -end - -# x[1] is a parameter, but x[2] is an observation -model = gdemo([missing, 2.4]) -c = sample(model, HMC(0.01, 5), 500) -``` - -#### Default Values - -Arguments to Turing models can have default values much like how default values work in normal Julia functions. For instance, the following will assign `missing` to `x` and treat it as a random variable. If the default value is not `missing`, `x` will be assigned that value and will be treated as an observation instead. - - -```{julia} -using Turing - -@model function generative(x=missing, ::Type{T}=Float64) where {T<:Real} - if x === missing - # Initialize x when missing - x = Vector{T}(undef, 10) - end - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - for i in 1:length(x) - x[i] ~ Normal(m, sqrt(s²)) - end - return s², m -end - -m = generative() -chain = sample(m, HMC(0.01, 5), 1000) -``` - -#### Access Values inside Chain - -You can access the values inside a chain several ways: - - 1. Turn them into a `DataFrame` object - 2. Use their raw `AxisArray` form - 3. Create a three-dimensional `Array` object - -For example, let `c` be a `Chain`: - - 1. `DataFrame(c)` converts `c` to a `DataFrame`, - 2. `c.value` retrieves the values inside `c` as an `AxisArray`, and - 3. `c.value.data` retrieves the values inside `c` as a 3D `Array`. - -#### Variable Types and Type Parameters - -The element type of a vector (or matrix) of random variables should match the `eltype` of the its prior distribution, `<: Integer` for discrete distributions and `<: AbstractFloat` for continuous distributions. Moreover, if the continuous random variable is to be sampled using a Hamiltonian sampler, the vector's element type needs to either be: - -1. `Real` to enable auto-differentiation through the model which uses special number types that are sub-types of `Real`, or - -2. Some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Float64) where {T}`. Similarly, when using a particle sampler, the Julia variable used should either be: - -3. An `Array`, or - -4. An instance of some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Vector{Float64}) where {T}`. - -### Querying Probabilities from Model or Chain - -Turing offers three functions: [`loglikelihood`](https://turinglang.org/DynamicPPL.jl/dev/api/#StatsAPI.loglikelihood), [`logprior`](https://turinglang.org/DynamicPPL.jl/dev/api/#DynamicPPL.logprior), and [`logjoint`](https://turinglang.org/DynamicPPL.jl/dev/api/#DynamicPPL.logjoint) to query the log-likelihood, log-prior, and log-joint probabilities of a model, respectively. - -Let's look at a simple model called `gdemo`: - -```{julia} -@model function gdemo0() - s ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s)) - return x ~ Normal(m, sqrt(s)) -end -``` - -If we observe x to be 1.0, we can condition the model on this datum using the [`condition`](https://turinglang.org/DynamicPPL.jl/dev/api/#AbstractPPL.condition) syntax: - -```{julia} -model = gdemo0() | (x=1.0,) -``` - -Now, let's compute the log-likelihood of the observation given specific values of the model parameters, `s` and `m`: - -```{julia} -loglikelihood(model, (s=1.0, m=1.0)) -``` - -We can easily verify that value in this case: - -```{julia} -logpdf(Normal(1.0, 1.0), 1.0) -``` - -We can also compute the log-prior probability of the model for the same values of s and m: - -```{julia} -logprior(model, (s=1.0, m=1.0)) -``` - -```{julia} -logpdf(InverseGamma(2, 3), 1.0) + logpdf(Normal(0, sqrt(1.0)), 1.0) -``` - -Finally, we can compute the log-joint probability of the model parameters and data: - -```{julia} -logjoint(model, (s=1.0, m=1.0)) -``` - -```{julia} -logpdf(Normal(1.0, 1.0), 1.0) + -logpdf(InverseGamma(2, 3), 1.0) + -logpdf(Normal(0, sqrt(1.0)), 1.0) -``` - -Querying with `Chains` object is easy as well: - -```{julia} -chn = sample(model, Prior(), 10) -``` - -```{julia} -loglikelihood(model, chn) -``` - -### Maximum likelihood and maximum a posterior estimates - -Turing provides support for two mode estimation techniques, [maximum likelihood estimation](https://en.wikipedia.org/wiki/Maximum_likelihood_estimation) (MLE) and [maximum a posterior](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) (MAP) estimation. Optimization is performed by the [Optim.jl](https://github.com/JuliaNLSolvers/Optim.jl) package. Mode estimation is currently a optional tool, and will not be available to you unless you have manually installed Optim and loaded the package with a `using` statement. To install Optim, run `import Pkg; Pkg.add("Optim")`. - -Mode estimation only works when all model parameters are continuous -- discrete parameters cannot be estimated with MLE/MAP as of yet. - -To understand how mode estimation works, let us first load Turing and Optim to enable mode estimation, and then declare a model: - -```{julia} -# Note that loading Optim explicitly is required for mode estimation to function, -# as Turing does not load the opimization suite unless Optim is loaded as well. -using Turing -using Optim - -@model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end -end -``` - -Once the model is defined, we can construct a model instance as we normally would: - -```{julia} -# Create some data to pass to the model. -data = [1.5, 2.0] - -# Instantiate the gdemo model with our data. -model = gdemo(data) -``` - -Mode estimation is typically quick and easy at this point. Turing extends the function `Optim.optimize` and accepts the structs `MLE()` or `MAP()`, which inform Turing whether to provide an MLE or MAP estimate, respectively. By default, the [LBFGS optimizer](https://julianlsolvers.github.io/Optim.jl/stable/#algo/lbfgs/) is used, though this can be changed. Basic usage is: - -```{julia} -# Generate a MLE estimate. -mle_estimate = optimize(model, MLE()) - -# Generate a MAP estimate. -map_estimate = optimize(model, MAP()) -``` - -If you wish to change to a different optimizer, such as `NelderMead`, simply place your optimizer in the third argument slot: - -```{julia} -#| eval: false -# Use NelderMead -mle_estimate = optimize(model, MLE(), NelderMead()) - -# Use SimulatedAnnealing -mle_estimate = optimize(model, MLE(), SimulatedAnnealing()) - -# Use ParticleSwarm -mle_estimate = optimize(model, MLE(), ParticleSwarm()) - -# Use Newton -mle_estimate = optimize(model, MLE(), Newton()) - -# Use AcceleratedGradientDescent -mle_estimate = optimize(model, MLE(), AcceleratedGradientDescent()) -``` - -Some methods may have trouble calculating the mode because not enough iterations were allowed, or the target function moved upwards between function calls. Turing will warn you if Optim fails to converge by running `Optim.converge`. A typical solution to this might be to add more iterations, or allow the optimizer to increase between function iterations: - -```{julia} -#| eval: false -# Increase the iterations and allow function eval to increase between calls. -mle_estimate = optimize( - model, MLE(), Newton(), Optim.Options(; iterations=10_000, allow_f_increases=true) -) -``` - -More options for Optim are available [here](https://julianlsolvers.github.io/Optim.jl/stable/#user/config/). - -#### Analyzing your mode estimate - -Turing extends several methods from `StatsBase` that can be used to analyze your mode estimation results. Methods implemented include `vcov`, `informationmatrix`, `coeftable`, `params`, and `coef`, among others. - -For example, let's examine our ML estimate from above using `coeftable`: - -```{julia} -#| eval: false -# Import StatsBase to use it's statistical methods. -using StatsBase - -# Print out the coefficient table. -coeftable(mle_estimate) -``` - - - -```{.cell-bg} -───────────────────────────── - estimate stderror tstat -───────────────────────────── -s 0.0625 0.0625 1.0 -m 1.75 0.176777 9.8995 -───────────────────────────── -``` - -Standard errors are calculated from the Fisher information matrix (inverse Hessian of the log likelihood or log joint). t-statistics will be familiar to frequentist statisticians. Warning -- standard errors calculated in this way may not always be appropriate for MAP estimates, so please be cautious in interpreting them. - -#### Sampling with the MAP/MLE as initial states - -You can begin sampling your chain from an MLE/MAP estimate by extracting the vector of parameter values and providing it to the `sample` function with the keyword `initial_params`. For example, here is how to sample from the full posterior using the MAP estimate as the starting point: - -```{julia} -#| eval: false -# Generate an MAP estimate. -map_estimate = optimize(model, MAP()) - -# Sample with the MAP estimate as the starting point. -chain = sample(model, NUTS(), 1_000; initial_params=map_estimate.values.array) -``` - -## Beyond the Basics - -### Compositional Sampling Using Gibbs - -Turing.jl provides a Gibbs interface to combine different samplers. For example, one can combine an `HMC` sampler with a `PG` sampler to run inference for different parameters in a single model as below. - -```{julia} -@model function simple_choice(xs) - p ~ Beta(2, 2) - z ~ Bernoulli(p) - for i in 1:length(xs) - if z == 1 - xs[i] ~ Normal(0, 1) - else - xs[i] ~ Normal(2, 1) - end - end -end - -simple_choice_f = simple_choice([1.5, 2.0, 0.3]) - -chn = sample(simple_choice_f, Gibbs(HMC(0.2, 3, :p), PG(20, :z)), 1000) -``` - -The `Gibbs` sampler can be used to specify unique automatic differentiation backends for different variable spaces. Please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article for more. - -For more details of compositional sampling in Turing.jl, please check the corresponding [paper](https://proceedings.mlr.press/v84/ge18b.html). - -### Working with filldist and arraydist - -Turing provides `filldist(dist::Distribution, n::Int)` and `arraydist(dists::AbstractVector{<:Distribution})` as a simplified interface to construct product distributions, e.g., to model a set of variables that share the same structure but vary by group. - -#### Constructing product distributions with filldist - -The function `filldist` provides a general interface to construct product distributions over distributions of the same type and parameterisation. -Note that, in contrast to the product distribution interface provided by Distributions.jl (`Product`), `filldist` supports product distributions over univariate or multivariate distributions. - -Example usage: - -```{julia} -@model function demo(x, g) - k = length(unique(g)) - a ~ filldist(Exponential(), k) # = Product(fill(Exponential(), k)) - mu = a[g] - return x .~ Normal.(mu) -end -``` - -#### Constructing product distributions with arraydist - -The function `arraydist` provides a general interface to construct product distributions over distributions of varying type and parameterisation. -Note that in contrast to the product distribution interface provided by Distributions.jl (`Product`), `arraydist` supports product distributions over univariate or multivariate distributions. - -Example usage: - -```{julia} -@model function demo(x, g) - k = length(unique(g)) - a ~ arraydist([Exponential(i) for i in 1:k]) - mu = a[g] - return x .~ Normal.(mu) -end -``` - -### Working with MCMCChains.jl - -Turing.jl wraps its samples using `MCMCChains.Chain` so that all the functions working for `MCMCChains.Chain` can be re-used in Turing.jl. Two typical functions are `MCMCChains.describe` and `MCMCChains.plot`, which can be used as follows for an obtained chain `chn`. For more information on `MCMCChains`, please see the [GitHub repository](https://github.com/TuringLang/MCMCChains.jl). - -```{julia} -describe(chn) # Lists statistics of the samples. -plot(chn) # Plots statistics of the samples. -``` - -There are numerous functions in addition to `describe` and `plot` in the `MCMCChains` package, such as those used in convergence diagnostics. For more information on the package, please see the [GitHub repository](https://github.com/TuringLang/MCMCChains.jl). - -### Changing Default Settings - -Some of Turing.jl's default settings can be changed for better usage. - -#### AD Chunk Size - -ForwardDiff (Turing's default AD backend) uses forward-mode chunk-wise AD. The chunk size can be set manually by `setchunksize(new_chunk_size)`. - -#### AD Backend - -Turing supports four packages of automatic differentiation (AD) in the back end during sampling. The default AD backend is [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD. Three reverse-mode AD backends are also supported, namely [Tracker](https://github.com/FluxML/Tracker.jl), [Zygote](https://github.com/FluxML/Zygote.jl) and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl). `Zygote` and `ReverseDiff` are supported optionally if explicitly loaded by the user with `using Zygote` or `using ReverseDiff` next to `using Turing`. - -For more information on Turing's automatic differentiation backend, please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article. - -#### Progress Logging - -`Turing.jl` uses ProgressLogging.jl to log the progress of sampling. Progress -logging is enabled as default but might slow down inference. It can be turned on -or off by setting the keyword argument `progress` of `sample` to `true` or `false`, respectively. Moreover, you can enable or disable progress logging globally by calling `setprogress!(true)` or `setprogress!(false)`, respectively. - -Turing uses heuristics to select an appropriate visualization backend. If you -use [Juno](https://junolab.org/), the progress is displayed with a -[progress bar in the Atom window](http://docs.junolab.org/latest/man/juno_frontend/#Progress-Meters-1). -For Jupyter notebooks the default backend is -[ConsoleProgressMonitor.jl](https://github.com/tkf/ConsoleProgressMonitor.jl). -In all other cases, progress logs are displayed with -[TerminalLoggers.jl](https://github.com/c42f/TerminalLoggers.jl). Alternatively, -if you provide a custom visualization backend, Turing uses it instead of the +--- +title: Guide +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +## Basics + +### Introduction + +A probabilistic program is Julia code wrapped in a `@model` macro. It can use arbitrary Julia code, but to ensure correctness of inference it should not have external effects or modify global state. Stack-allocated variables are safe, but mutable heap-allocated objects may lead to subtle bugs when using task copying. By default Libtask deepcopies `Array` and `Dict` objects when copying task to avoid bugs with data stored in mutable structure in Turing models. + +To specify distributions of random variables, Turing programs should use the `~` notation: + +`x ~ distr` where `x` is a symbol and `distr` is a distribution. If `x` is undefined in the model function, inside the probabilistic program, this puts a random variable named `x`, distributed according to `distr`, in the current scope. `distr` can be a value of any type that implements `rand(distr)`, which samples a value from the distribution `distr`. If `x` is defined, this is used for conditioning in a style similar to [Anglican](https://probprog.github.io/anglican/index.html) (another PPL). In this case, `x` is an observed value, assumed to have been drawn from the distribution `distr`. The likelihood is computed using `logpdf(distr,y)`. The observe statements should be arranged so that every possible run traverses all of them in exactly the same order. This is equivalent to demanding that they are not placed inside stochastic control flow. + +Available inference methods include Importance Sampling (IS), Sequential Monte Carlo (SMC), Particle Gibbs (PG), Hamiltonian Monte Carlo (HMC), Hamiltonian Monte Carlo with Dual Averaging (HMCDA) and The No-U-Turn Sampler (NUTS). + +### Simple Gaussian Demo + +Below is a simple Gaussian demo illustrate the basic usage of Turing.jl. + + +```{julia} +# Import packages. +using Turing +using StatsPlots + +# Define a simple Normal model with unknown mean and variance. +@model function gdemo(x, y) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + x ~ Normal(m, sqrt(s²)) + return y ~ Normal(m, sqrt(s²)) +end +``` + +Note: As a sanity check, the prior expectation of `s²` is `mean(InverseGamma(2, 3)) = 3/(2 - 1) = 3` and the prior expectation of `m` is 0. This can be easily checked using `Prior`: + +```{julia} +#| output: false +setprogress!(false) +``` + +```{julia} +p1 = sample(gdemo(missing, missing), Prior(), 100000) +``` + +We can perform inference by using the `sample` function, the first argument of which is our probabilistic program and the second of which is a sampler. More information on each sampler is located in the [API]({{< meta site-url >}}/library). + +```{julia} +# Run sampler, collect results. +c1 = sample(gdemo(1.5, 2), SMC(), 1000) +c2 = sample(gdemo(1.5, 2), PG(10), 1000) +c3 = sample(gdemo(1.5, 2), HMC(0.1, 5), 1000) +c4 = sample(gdemo(1.5, 2), Gibbs(PG(10, :m), HMC(0.1, 5, :s²)), 1000) +c5 = sample(gdemo(1.5, 2), HMCDA(0.15, 0.65), 1000) +c6 = sample(gdemo(1.5, 2), NUTS(0.65), 1000) +``` + +The `MCMCChains` module (which is re-exported by Turing) provides plotting tools for the `Chain` objects returned by a `sample` function. See the [MCMCChains](https://github.com/TuringLang/MCMCChains.jl) repository for more information on the suite of tools available for diagnosing MCMC chains. + +```{julia} +#| eval: false +# Summarise results +describe(c3) + +# Plot results +plot(c3) +savefig("gdemo-plot.png") +``` + +The arguments for each sampler are: + + - SMC: number of particles. + - PG: number of particles, number of iterations. + - HMC: leapfrog step size, leapfrog step numbers. + - Gibbs: component sampler 1, component sampler 2, ... + - HMCDA: total leapfrog length, target accept ratio. + - NUTS: number of adaptation steps (optional), target accept ratio. + +For detailed information on the samplers, please review Turing.jl's [API]({{< meta site-url >}}/library) documentation. + +### Modelling Syntax Explained + +Using this syntax, a probabilistic model is defined in Turing. The model function generated by Turing can then be used to condition the model onto data. Subsequently, the sample function can be used to generate samples from the posterior distribution. + +In the following example, the defined model is conditioned to the data (arg*1 = 1, arg*2 = 2) by passing (1, 2) to the model function. + +```{julia} +#| eval: false +@model function model_name(arg_1, arg_2) + return ... +end +``` + +The conditioned model can then be passed onto the sample function to run posterior inference. + +```{julia} +#| eval: false +model_func = model_name(1, 2) +chn = sample(model_func, HMC(..)) # Perform inference by sampling using HMC. +``` + +The returned chain contains samples of the variables in the model. + +```{julia} +#| eval: false +var_1 = mean(chn[:var_1]) # Taking the mean of a variable named var_1. +``` + +The key (`:var_1`) can be a `Symbol` or a `String`. For example, to fetch `x[1]`, one can use `chn[Symbol("x[1]")]` or `chn["x[1]"]`. +If you want to retrieve all parameters associated with a specific symbol, you can use `group`. As an example, if you have the +parameters `"x[1]"`, `"x[2]"`, and `"x[3]"`, calling `group(chn, :x)` or `group(chn, "x")` will return a new chain with only `"x[1]"`, `"x[2]"`, and `"x[3]"`. + +Turing does not have a declarative form. More generally, the order in which you place the lines of a `@model` macro matters. For example, the following example works: + +```{julia} +# Define a simple Normal model with unknown mean and variance. +@model function model_function(y) + s ~ Poisson(1) + y ~ Normal(s, 1) + return y +end + +sample(model_function(10), SMC(), 100) +``` + +But if we switch the `s ~ Poisson(1)` and `y ~ Normal(s, 1)` lines, the model will no longer sample correctly: + +```{julia} +#| eval: false +# Define a simple Normal model with unknown mean and variance. +@model function model_function(y) + y ~ Normal(s, 1) + s ~ Poisson(1) + return y +end + +sample(model_function(10), SMC(), 100) +``` + +### Sampling Multiple Chains + +Turing supports distributed and threaded parallel sampling. To do so, call `sample(model, sampler, parallel_type, n, n_chains)`, where `parallel_type` can be either `MCMCThreads()` or `MCMCDistributed()` for thread and parallel sampling, respectively. + +Having multiple chains in the same object is valuable for evaluating convergence. Some diagnostic functions like `gelmandiag` require multiple chains. + +If you do not want parallelism or are on an older version Julia, you can sample multiple chains with the `mapreduce` function: + +```{julia} +#| eval: false +# Replace num_chains below with however many chains you wish to sample. +chains = mapreduce(c -> sample(model_fun, sampler, 1000), chainscat, 1:num_chains) +``` + +The `chains` variable now contains a `Chains` object which can be indexed by chain. To pull out the first chain from the `chains` object, use `chains[:,:,1]`. The method is the same if you use either of the below parallel sampling methods. + +#### Multithreaded sampling + +If you wish to perform multithreaded sampling and are running Julia 1.3 or greater, you can call `sample` with the following signature: + +```{julia} +#| eval: false +using Turing + +@model function gdemo(x) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end +end + +model = gdemo([1.5, 2.0]) + +# Sample four chains using multiple threads, each with 1000 samples. +sample(model, NUTS(), MCMCThreads(), 1000, 4) +``` + +Be aware that Turing cannot add threads for you -- you must have started your Julia instance with multiple threads to experience any kind of parallelism. See the [Julia documentation](https://docs.julialang.org/en/v1/manual/parallel-computing/#man-multithreading-1) for details on how to achieve this. + +#### Distributed sampling + +To perform distributed sampling (using multiple processes), you must first import `Distributed`. + +Process parallel sampling can be done like so: + +```{julia} +#| eval: false +# Load Distributed to add processes and the @everywhere macro. +using Distributed + +# Load Turing. +using Turing + +# Add four processes to use for sampling. +addprocs(4; exeflags="--project=$(Base.active_project())") + +# Initialize everything on all the processes. +# Note: Make sure to do this after you've already loaded Turing, +# so each process does not have to precompile. +# Parallel sampling may fail silently if you do not do this. +@everywhere using Turing + +# Define a model on all processes. +@everywhere @model function gdemo(x) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end +end + +# Declare the model instance everywhere. +@everywhere model = gdemo([1.5, 2.0]) + +# Sample four chains using multiple processes, each with 1000 samples. +sample(model, NUTS(), MCMCDistributed(), 1000, 4) +``` + +### Sampling from an Unconditional Distribution (The Prior) + +Turing allows you to sample from a declared model's prior. If you wish to draw a chain from the prior to inspect your prior distributions, you can simply run + +```{julia} +#| eval: false +chain = sample(model, Prior(), n_samples) +``` + +You can also run your model (as if it were a function) from the prior distribution, by calling the model without specifying inputs or a sampler. In the below example, we specify a `gdemo` model which returns two variables, `x` and `y`. The model includes `x` and `y` as arguments, but calling the function without passing in `x` or `y` means that Turing's compiler will assume they are missing values to draw from the relevant distribution. The `return` statement is necessary to retrieve the sampled `x` and `y` values. +Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. + +```{julia} +@model function gdemo(x, y) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + x ~ Normal(m, sqrt(s²)) + y ~ Normal(m, sqrt(s²)) + return x, y +end +``` + +Assign the function with `missing` inputs to a variable, and Turing will produce a sample from the prior distribution. + +```{julia} +# Samples from p(x,y) +g_prior_sample = gdemo(missing, missing) +g_prior_sample() +``` + +### Sampling from a Conditional Distribution (The Posterior) + +#### Treating observations as random variables + +Inputs to the model that have a value `missing` are treated as parameters, aka random variables, to be estimated/sampled. This can be useful if you want to simulate draws for that parameter, or if you are sampling from a conditional distribution. Turing supports the following syntax: + +```{julia} +@model function gdemo(x, ::Type{T}=Float64) where {T} + if x === missing + # Initialize `x` if missing + x = Vector{T}(undef, 2) + end + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end +end + +# Construct a model with x = missing +model = gdemo(missing) +c = sample(model, HMC(0.01, 5), 500) +``` + +Note the need to initialize `x` when missing since we are iterating over its elements later in the model. The generated values for `x` can be extracted from the `Chains` object using `c[:x]`. + +Turing also supports mixed `missing` and non-`missing` values in `x`, where the missing ones will be treated as random variables to be sampled while the others get treated as observations. For example: + +```{julia} +@model function gdemo(x) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end +end + +# x[1] is a parameter, but x[2] is an observation +model = gdemo([missing, 2.4]) +c = sample(model, HMC(0.01, 5), 500) +``` + +#### Default Values + +Arguments to Turing models can have default values much like how default values work in normal Julia functions. For instance, the following will assign `missing` to `x` and treat it as a random variable. If the default value is not `missing`, `x` will be assigned that value and will be treated as an observation instead. + + +```{julia} +using Turing + +@model function generative(x=missing, ::Type{T}=Float64) where {T<:Real} + if x === missing + # Initialize x when missing + x = Vector{T}(undef, 10) + end + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + for i in 1:length(x) + x[i] ~ Normal(m, sqrt(s²)) + end + return s², m +end + +m = generative() +chain = sample(m, HMC(0.01, 5), 1000) +``` + +#### Access Values inside Chain + +You can access the values inside a chain several ways: + + 1. Turn them into a `DataFrame` object + 2. Use their raw `AxisArray` form + 3. Create a three-dimensional `Array` object + +For example, let `c` be a `Chain`: + + 1. `DataFrame(c)` converts `c` to a `DataFrame`, + 2. `c.value` retrieves the values inside `c` as an `AxisArray`, and + 3. `c.value.data` retrieves the values inside `c` as a 3D `Array`. + +#### Variable Types and Type Parameters + +The element type of a vector (or matrix) of random variables should match the `eltype` of the its prior distribution, `<: Integer` for discrete distributions and `<: AbstractFloat` for continuous distributions. Moreover, if the continuous random variable is to be sampled using a Hamiltonian sampler, the vector's element type needs to either be: + +1. `Real` to enable auto-differentiation through the model which uses special number types that are sub-types of `Real`, or + +2. Some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Float64) where {T}`. Similarly, when using a particle sampler, the Julia variable used should either be: + +3. An `Array`, or + +4. An instance of some type parameter `T` defined in the model header using the type parameter syntax, e.g. `function gdemo(x, ::Type{T} = Vector{Float64}) where {T}`. + +### Querying Probabilities from Model or Chain + +Turing offers three functions: [`loglikelihood`](https://turinglang.org/DynamicPPL.jl/dev/api/#StatsAPI.loglikelihood), [`logprior`](https://turinglang.org/DynamicPPL.jl/dev/api/#DynamicPPL.logprior), and [`logjoint`](https://turinglang.org/DynamicPPL.jl/dev/api/#DynamicPPL.logjoint) to query the log-likelihood, log-prior, and log-joint probabilities of a model, respectively. + +Let's look at a simple model called `gdemo`: + +```{julia} +@model function gdemo0() + s ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s)) + return x ~ Normal(m, sqrt(s)) +end +``` + +If we observe x to be 1.0, we can condition the model on this datum using the [`condition`](https://turinglang.org/DynamicPPL.jl/dev/api/#AbstractPPL.condition) syntax: + +```{julia} +model = gdemo0() | (x=1.0,) +``` + +Now, let's compute the log-likelihood of the observation given specific values of the model parameters, `s` and `m`: + +```{julia} +loglikelihood(model, (s=1.0, m=1.0)) +``` + +We can easily verify that value in this case: + +```{julia} +logpdf(Normal(1.0, 1.0), 1.0) +``` + +We can also compute the log-prior probability of the model for the same values of s and m: + +```{julia} +logprior(model, (s=1.0, m=1.0)) +``` + +```{julia} +logpdf(InverseGamma(2, 3), 1.0) + logpdf(Normal(0, sqrt(1.0)), 1.0) +``` + +Finally, we can compute the log-joint probability of the model parameters and data: + +```{julia} +logjoint(model, (s=1.0, m=1.0)) +``` + +```{julia} +logpdf(Normal(1.0, 1.0), 1.0) + +logpdf(InverseGamma(2, 3), 1.0) + +logpdf(Normal(0, sqrt(1.0)), 1.0) +``` + +Querying with `Chains` object is easy as well: + +```{julia} +chn = sample(model, Prior(), 10) +``` + +```{julia} +loglikelihood(model, chn) +``` + +### Maximum likelihood and maximum a posterior estimates + +Turing provides support for two mode estimation techniques, [maximum likelihood estimation](https://en.wikipedia.org/wiki/Maximum_likelihood_estimation) (MLE) and [maximum a posterior](https://en.wikipedia.org/wiki/Maximum_a_posteriori_estimation) (MAP) estimation. Optimization is performed by the [Optim.jl](https://github.com/JuliaNLSolvers/Optim.jl) package. Mode estimation is currently a optional tool, and will not be available to you unless you have manually installed Optim and loaded the package with a `using` statement. To install Optim, run `import Pkg; Pkg.add("Optim")`. + +Mode estimation only works when all model parameters are continuous -- discrete parameters cannot be estimated with MLE/MAP as of yet. + +To understand how mode estimation works, let us first load Turing and Optim to enable mode estimation, and then declare a model: + +```{julia} +# Note that loading Optim explicitly is required for mode estimation to function, +# as Turing does not load the opimization suite unless Optim is loaded as well. +using Turing +using Optim + +@model function gdemo(x) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end +end +``` + +Once the model is defined, we can construct a model instance as we normally would: + +```{julia} +# Create some data to pass to the model. +data = [1.5, 2.0] + +# Instantiate the gdemo model with our data. +model = gdemo(data) +``` + +Mode estimation is typically quick and easy at this point. Turing extends the function `Optim.optimize` and accepts the structs `MLE()` or `MAP()`, which inform Turing whether to provide an MLE or MAP estimate, respectively. By default, the [LBFGS optimizer](https://julianlsolvers.github.io/Optim.jl/stable/#algo/lbfgs/) is used, though this can be changed. Basic usage is: + +```{julia} +# Generate a MLE estimate. +mle_estimate = optimize(model, MLE()) + +# Generate a MAP estimate. +map_estimate = optimize(model, MAP()) +``` + +If you wish to change to a different optimizer, such as `NelderMead`, simply place your optimizer in the third argument slot: + +```{julia} +#| eval: false +# Use NelderMead +mle_estimate = optimize(model, MLE(), NelderMead()) + +# Use SimulatedAnnealing +mle_estimate = optimize(model, MLE(), SimulatedAnnealing()) + +# Use ParticleSwarm +mle_estimate = optimize(model, MLE(), ParticleSwarm()) + +# Use Newton +mle_estimate = optimize(model, MLE(), Newton()) + +# Use AcceleratedGradientDescent +mle_estimate = optimize(model, MLE(), AcceleratedGradientDescent()) +``` + +Some methods may have trouble calculating the mode because not enough iterations were allowed, or the target function moved upwards between function calls. Turing will warn you if Optim fails to converge by running `Optim.converge`. A typical solution to this might be to add more iterations, or allow the optimizer to increase between function iterations: + +```{julia} +#| eval: false +# Increase the iterations and allow function eval to increase between calls. +mle_estimate = optimize( + model, MLE(), Newton(), Optim.Options(; iterations=10_000, allow_f_increases=true) +) +``` + +More options for Optim are available [here](https://julianlsolvers.github.io/Optim.jl/stable/#user/config/). + +#### Analyzing your mode estimate + +Turing extends several methods from `StatsBase` that can be used to analyze your mode estimation results. Methods implemented include `vcov`, `informationmatrix`, `coeftable`, `params`, and `coef`, among others. + +For example, let's examine our ML estimate from above using `coeftable`: + +```{julia} +#| eval: false +# Import StatsBase to use it's statistical methods. +using StatsBase + +# Print out the coefficient table. +coeftable(mle_estimate) +``` + + + +```{.cell-bg} +───────────────────────────── + estimate stderror tstat +───────────────────────────── +s 0.0625 0.0625 1.0 +m 1.75 0.176777 9.8995 +───────────────────────────── +``` + +Standard errors are calculated from the Fisher information matrix (inverse Hessian of the log likelihood or log joint). t-statistics will be familiar to frequentist statisticians. Warning -- standard errors calculated in this way may not always be appropriate for MAP estimates, so please be cautious in interpreting them. + +#### Sampling with the MAP/MLE as initial states + +You can begin sampling your chain from an MLE/MAP estimate by extracting the vector of parameter values and providing it to the `sample` function with the keyword `initial_params`. For example, here is how to sample from the full posterior using the MAP estimate as the starting point: + +```{julia} +#| eval: false +# Generate an MAP estimate. +map_estimate = optimize(model, MAP()) + +# Sample with the MAP estimate as the starting point. +chain = sample(model, NUTS(), 1_000; initial_params=map_estimate.values.array) +``` + +## Beyond the Basics + +### Compositional Sampling Using Gibbs + +Turing.jl provides a Gibbs interface to combine different samplers. For example, one can combine an `HMC` sampler with a `PG` sampler to run inference for different parameters in a single model as below. + +```{julia} +@model function simple_choice(xs) + p ~ Beta(2, 2) + z ~ Bernoulli(p) + for i in 1:length(xs) + if z == 1 + xs[i] ~ Normal(0, 1) + else + xs[i] ~ Normal(2, 1) + end + end +end + +simple_choice_f = simple_choice([1.5, 2.0, 0.3]) + +chn = sample(simple_choice_f, Gibbs(HMC(0.2, 3, :p), PG(20, :z)), 1000) +``` + +The `Gibbs` sampler can be used to specify unique automatic differentiation backends for different variable spaces. Please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article for more. + +For more details of compositional sampling in Turing.jl, please check the corresponding [paper](https://proceedings.mlr.press/v84/ge18b.html). + +### Working with filldist and arraydist + +Turing provides `filldist(dist::Distribution, n::Int)` and `arraydist(dists::AbstractVector{<:Distribution})` as a simplified interface to construct product distributions, e.g., to model a set of variables that share the same structure but vary by group. + +#### Constructing product distributions with filldist + +The function `filldist` provides a general interface to construct product distributions over distributions of the same type and parameterisation. +Note that, in contrast to the product distribution interface provided by Distributions.jl (`Product`), `filldist` supports product distributions over univariate or multivariate distributions. + +Example usage: + +```{julia} +@model function demo(x, g) + k = length(unique(g)) + a ~ filldist(Exponential(), k) # = Product(fill(Exponential(), k)) + mu = a[g] + return x .~ Normal.(mu) +end +``` + +#### Constructing product distributions with arraydist + +The function `arraydist` provides a general interface to construct product distributions over distributions of varying type and parameterisation. +Note that in contrast to the product distribution interface provided by Distributions.jl (`Product`), `arraydist` supports product distributions over univariate or multivariate distributions. + +Example usage: + +```{julia} +@model function demo(x, g) + k = length(unique(g)) + a ~ arraydist([Exponential(i) for i in 1:k]) + mu = a[g] + return x .~ Normal.(mu) +end +``` + +### Working with MCMCChains.jl + +Turing.jl wraps its samples using `MCMCChains.Chain` so that all the functions working for `MCMCChains.Chain` can be re-used in Turing.jl. Two typical functions are `MCMCChains.describe` and `MCMCChains.plot`, which can be used as follows for an obtained chain `chn`. For more information on `MCMCChains`, please see the [GitHub repository](https://github.com/TuringLang/MCMCChains.jl). + +```{julia} +describe(chn) # Lists statistics of the samples. +plot(chn) # Plots statistics of the samples. +``` + +There are numerous functions in addition to `describe` and `plot` in the `MCMCChains` package, such as those used in convergence diagnostics. For more information on the package, please see the [GitHub repository](https://github.com/TuringLang/MCMCChains.jl). + +### Changing Default Settings + +Some of Turing.jl's default settings can be changed for better usage. + +#### AD Chunk Size + +ForwardDiff (Turing's default AD backend) uses forward-mode chunk-wise AD. The chunk size can be set manually by `setchunksize(new_chunk_size)`. + +#### AD Backend + +Turing supports four packages of automatic differentiation (AD) in the back end during sampling. The default AD backend is [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl) for forward-mode AD. Three reverse-mode AD backends are also supported, namely [Tracker](https://github.com/FluxML/Tracker.jl), [Zygote](https://github.com/FluxML/Zygote.jl) and [ReverseDiff](https://github.com/JuliaDiff/ReverseDiff.jl). `Zygote` and `ReverseDiff` are supported optionally if explicitly loaded by the user with `using Zygote` or `using ReverseDiff` next to `using Turing`. + +For more information on Turing's automatic differentiation backend, please see the [Automatic Differentiation]({{< meta site-url >}}/dev/docs/using-turing/autodiff) article. + +#### Progress Logging + +`Turing.jl` uses ProgressLogging.jl to log the progress of sampling. Progress +logging is enabled as default but might slow down inference. It can be turned on +or off by setting the keyword argument `progress` of `sample` to `true` or `false`, respectively. Moreover, you can enable or disable progress logging globally by calling `setprogress!(true)` or `setprogress!(false)`, respectively. + +Turing uses heuristics to select an appropriate visualization backend. If you +use [Juno](https://junolab.org/), the progress is displayed with a +[progress bar in the Atom window](http://docs.junolab.org/latest/man/juno_frontend/#Progress-Meters-1). +For Jupyter notebooks the default backend is +[ConsoleProgressMonitor.jl](https://github.com/tkf/ConsoleProgressMonitor.jl). +In all other cases, progress logs are displayed with +[TerminalLoggers.jl](https://github.com/c42f/TerminalLoggers.jl). Alternatively, +if you provide a custom visualization backend, Turing uses it instead of the default backend. \ No newline at end of file diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-13-using-turing-performance-tips/Project.toml b/tutorials/docs-13-using-turing-performance-tips/Project.toml old mode 100644 new mode 100755 index f9c7524b0..e4f92e8a9 --- a/tutorials/docs-13-using-turing-performance-tips/Project.toml +++ b/tutorials/docs-13-using-turing-performance-tips/Project.toml @@ -1,5 +1,5 @@ -[deps] -FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" -Memoization = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" +Memoization = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-13-using-turing-performance-tips/index.qmd b/tutorials/docs-13-using-turing-performance-tips/index.qmd old mode 100644 new mode 100755 index 17555c5b9..a79f2f405 --- a/tutorials/docs-13-using-turing-performance-tips/index.qmd +++ b/tutorials/docs-13-using-turing-performance-tips/index.qmd @@ -1,166 +1,173 @@ ---- -title: Performance Tips -engine: julia ---- - -This section briefly summarises a few common techniques to ensure good performance when using Turing. -We refer to [the Julia documentation](https://docs.julialang.org/en/v1/manual/performance-tips/index.html) for general techniques to ensure good performance of Julia programs. - -## Use multivariate distributions - -It is generally preferable to use multivariate distributions if possible. - -The following example: - -```{julia} -using Turing -@model function gmodel(x) - m ~ Normal() - for i in 1:length(x) - x[i] ~ Normal(m, 0.2) - end -end -``` - -can be directly expressed more efficiently using a simple transformation: - -```{julia} -using FillArrays - -@model function gmodel(x) - m ~ Normal() - return x ~ MvNormal(Fill(m, length(x)), 0.04 * I) -end -``` - -## Choose your AD backend - -Turing currently provides support for two different automatic differentiation (AD) backends. -Generally, try to use `:forwarddiff` for models with few parameters and `:reversediff`, `:tracker` or `:zygote` for models with large parameter vectors or linear algebra operations. See [Automatic Differentiation](autodiff) for details. - -## Special care for `:tracker` and `:zygote` - -In case of `:tracker` and `:zygote`, it is necessary to avoid loops for now. -This is mainly due to the reverse-mode AD backends `Tracker` and `Zygote` which are inefficient for such cases. `ReverseDiff` does better but vectorized operations will still perform better. - -Avoiding loops can be done using `filldist(dist, N)` and `arraydist(dists)`. `filldist(dist, N)` creates a multivariate distribution that is composed of `N` identical and independent copies of the univariate distribution `dist` if `dist` is univariate, or it creates a matrix-variate distribution composed of `N` identical and independent copies of the multivariate distribution `dist` if `dist` is multivariate. `filldist(dist, N, M)` can also be used to create a matrix-variate distribution from a univariate distribution `dist`. `arraydist(dists)` is similar to `filldist` but it takes an array of distributions `dists` as input. Writing a [custom distribution](advanced) with a custom adjoint is another option to avoid loops. - -## Ensure that types in your model can be inferred - -For efficient gradient-based inference, e.g. using HMC, NUTS or ADVI, it is important to ensure the types in your model can be inferred. - -The following example with abstract types - -```{julia} -@model function tmodel(x, y) - p, n = size(x) - params = Vector{Real}(undef, n) - for i in 1:n - params[i] ~ truncated(Normal(), 0, Inf) - end - - a = x * params - return y ~ MvNormal(a, I) -end -``` - -can be transformed into the following representation with concrete types: - -```{julia} -@model function tmodel(x, y, ::Type{T}=Float64) where {T} - p, n = size(x) - params = Vector{T}(undef, n) - for i in 1:n - params[i] ~ truncated(Normal(), 0, Inf) - end - - a = x * params - return y ~ MvNormal(a, I) -end -``` - -Alternatively, you could use `filldist` in this example: - -```{julia} -@model function tmodel(x, y) - params ~ filldist(truncated(Normal(), 0, Inf), size(x, 2)) - a = x * params - return y ~ MvNormal(a, I) -end -``` - -Note that you can use `@code_warntype` to find types in your model definition that the compiler cannot infer. -They are marked in red in the Julia REPL. - -For example, consider the following simple program: - -```{julia} -@model function tmodel(x) - p = Vector{Real}(undef, 1) - p[1] ~ Normal() - p = p .+ 1 - return x ~ Normal(p[1]) -end -``` - -We can use - -```{julia} -#| eval: false -using Random - -model = tmodel(1.0) - -@code_warntype model.f( - model, - Turing.VarInfo(model), - Turing.SamplingContext( - Random.default_rng(), Turing.SampleFromPrior(), Turing.DefaultContext() - ), - model.args..., -) -``` - -to inspect type inference in the model. - -## Reuse Computations in Gibbs Sampling - -Often when performing Gibbs sampling, one can save computational time by caching the output of expensive functions. The cached values can then be reused in future Gibbs sub-iterations which do not change the inputs to this expensive function. For example in the following model - -```{julia} -#| eval: false -@model function demo(x) - a ~ Gamma() - b ~ Normal() - c = function1(a) - d = function2(b) - return x .~ Normal(c, d) -end -alg = Gibbs(MH(:a), MH(:b)) -sample(demo(zeros(10)), alg, 1000) -``` - -when only updating `a` in a Gibbs sub-iteration, keeping `b` the same, the value of `d` doesn't change. And when only updating `b`, the value of `c` doesn't change. However, if `function1` and `function2` are expensive and are both run in every Gibbs sub-iteration, a lot of time would be spent computing values that we already computed before. Such a problem can be overcome using `Memoization.jl`. Memoizing a function lets us store and reuse the output of the function for every input it is called with. This has a slight time overhead but for expensive functions, the savings will be far greater. - -To use `Memoization.jl`, simply define memoized versions of `function1` and `function2` as such: - -```{julia} -#| eval: false -using Memoization - -@memoize memoized_function1(args...) = function1(args...) -@memoize memoized_function2(args...) = function2(args...) -``` - -Then define the `Turing` model using the new functions as such: - -```{julia} -#| eval: false -@model function demo(x) - a ~ Gamma() - b ~ Normal() - c = memoized_function1(a) - d = memoized_function2(b) - return x .~ Normal(c, d) -end +--- +title: Performance Tips +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +This section briefly summarises a few common techniques to ensure good performance when using Turing. +We refer to [the Julia documentation](https://docs.julialang.org/en/v1/manual/performance-tips/index.html) for general techniques to ensure good performance of Julia programs. + +## Use multivariate distributions + +It is generally preferable to use multivariate distributions if possible. + +The following example: + +```{julia} +using Turing +@model function gmodel(x) + m ~ Normal() + for i in 1:length(x) + x[i] ~ Normal(m, 0.2) + end +end +``` + +can be directly expressed more efficiently using a simple transformation: + +```{julia} +using FillArrays + +@model function gmodel(x) + m ~ Normal() + return x ~ MvNormal(Fill(m, length(x)), 0.04 * I) +end +``` + +## Choose your AD backend + +Turing currently provides support for two different automatic differentiation (AD) backends. +Generally, try to use `:forwarddiff` for models with few parameters and `:reversediff`, `:tracker` or `:zygote` for models with large parameter vectors or linear algebra operations. See [Automatic Differentiation](../docs-10-using-turing-autodiff/) for details. + +## Special care for `:tracker` and `:zygote` + +In case of `:tracker` and `:zygote`, it is necessary to avoid loops for now. +This is mainly due to the reverse-mode AD backends `Tracker` and `Zygote` which are inefficient for such cases. `ReverseDiff` does better but vectorized operations will still perform better. + +Avoiding loops can be done using `filldist(dist, N)` and `arraydist(dists)`. `filldist(dist, N)` creates a multivariate distribution that is composed of `N` identical and independent copies of the univariate distribution `dist` if `dist` is univariate, or it creates a matrix-variate distribution composed of `N` identical and independent copies of the multivariate distribution `dist` if `dist` is multivariate. `filldist(dist, N, M)` can also be used to create a matrix-variate distribution from a univariate distribution `dist`. `arraydist(dists)` is similar to `filldist` but it takes an array of distributions `dists` as input. Writing a [custom distribution](../docs-09-using-turing-advanced/) with a custom adjoint is another option to avoid loops. + +## Ensure that types in your model can be inferred + +For efficient gradient-based inference, e.g. using HMC, NUTS or ADVI, it is important to ensure the types in your model can be inferred. + +The following example with abstract types + +```{julia} +@model function tmodel(x, y) + p, n = size(x) + params = Vector{Real}(undef, n) + for i in 1:n + params[i] ~ truncated(Normal(), 0, Inf) + end + + a = x * params + return y ~ MvNormal(a, I) +end +``` + +can be transformed into the following representation with concrete types: + +```{julia} +@model function tmodel(x, y, ::Type{T}=Float64) where {T} + p, n = size(x) + params = Vector{T}(undef, n) + for i in 1:n + params[i] ~ truncated(Normal(), 0, Inf) + end + + a = x * params + return y ~ MvNormal(a, I) +end +``` + +Alternatively, you could use `filldist` in this example: + +```{julia} +@model function tmodel(x, y) + params ~ filldist(truncated(Normal(), 0, Inf), size(x, 2)) + a = x * params + return y ~ MvNormal(a, I) +end +``` + +Note that you can use `@code_warntype` to find types in your model definition that the compiler cannot infer. +They are marked in red in the Julia REPL. + +For example, consider the following simple program: + +```{julia} +@model function tmodel(x) + p = Vector{Real}(undef, 1) + p[1] ~ Normal() + p = p .+ 1 + return x ~ Normal(p[1]) +end +``` + +We can use + +```{julia} +#| eval: false +using Random + +model = tmodel(1.0) + +@code_warntype model.f( + model, + Turing.VarInfo(model), + Turing.SamplingContext( + Random.default_rng(), Turing.SampleFromPrior(), Turing.DefaultContext() + ), + model.args..., +) +``` + +to inspect type inference in the model. + +## Reuse Computations in Gibbs Sampling + +Often when performing Gibbs sampling, one can save computational time by caching the output of expensive functions. The cached values can then be reused in future Gibbs sub-iterations which do not change the inputs to this expensive function. For example in the following model + +```{julia} +#| eval: false +@model function demo(x) + a ~ Gamma() + b ~ Normal() + c = function1(a) + d = function2(b) + return x .~ Normal(c, d) +end +alg = Gibbs(MH(:a), MH(:b)) +sample(demo(zeros(10)), alg, 1000) +``` + +when only updating `a` in a Gibbs sub-iteration, keeping `b` the same, the value of `d` doesn't change. And when only updating `b`, the value of `c` doesn't change. However, if `function1` and `function2` are expensive and are both run in every Gibbs sub-iteration, a lot of time would be spent computing values that we already computed before. Such a problem can be overcome using `Memoization.jl`. Memoizing a function lets us store and reuse the output of the function for every input it is called with. This has a slight time overhead but for expensive functions, the savings will be far greater. + +To use `Memoization.jl`, simply define memoized versions of `function1` and `function2` as such: + +```{julia} +#| eval: false +using Memoization + +@memoize memoized_function1(args...) = function1(args...) +@memoize memoized_function2(args...) = function2(args...) +``` + +Then define the `Turing` model using the new functions as such: + +```{julia} +#| eval: false +@model function demo(x) + a ~ Gamma() + b ~ Normal() + c = memoized_function1(a) + d = memoized_function2(b) + return x .~ Normal(c, d) +end ``` \ No newline at end of file diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-14-using-turing-quick-start/Project.toml b/tutorials/docs-14-using-turing-quick-start/Project.toml old mode 100644 new mode 100755 index c43a70e12..3128533ae --- a/tutorials/docs-14-using-turing-quick-start/Project.toml +++ b/tutorials/docs-14-using-turing-quick-start/Project.toml @@ -1,4 +1,4 @@ -[deps] -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-14-using-turing-quick-start/index.qmd b/tutorials/docs-14-using-turing-quick-start/index.qmd old mode 100644 new mode 100755 index f17ad0193..9434f6a8c --- a/tutorials/docs-14-using-turing-quick-start/index.qmd +++ b/tutorials/docs-14-using-turing-quick-start/index.qmd @@ -1,67 +1,74 @@ ---- -pagetitle: Quick Start -title: Probabilistic Programming in Thirty Seconds -engine: julia ---- - -If you are already well-versed in probabilistic programming and want to take a quick look at how Turing's syntax works or otherwise just want a model to start with, we have provided a complete Bayesian coin-flipping model below. - -This example can be run wherever you have Julia installed (see [Getting Started]({{< meta site-url >}}/dev/docs/using-turing/getting-started/), but you will need to install the packages `Turing` and `StatsPlots` if you have not done so already. - -This is an excerpt from a more formal example which can be found in the documentation website [here]({{< meta site-url >}}/dev/docs/tutorials/introduction/). - -## Import Libraries -```{julia} -# Import libraries. -using Turing, StatsPlots, Random -``` - -```{julia} -# Set the true probability of heads in a coin. -p_true = 0.5 - -# Iterate from having seen 0 observations to 100 observations. -Ns = 0:100 -``` - -```{julia} -# Draw data from a Bernoulli distribution, i.e. draw heads or tails. -Random.seed!(12) -data = rand(Bernoulli(p_true), last(Ns)) -``` - - -## Declare Turing Model -```{julia} -# Declare our Turing model. -@model function coinflip(y) - # Our prior belief about the probability of heads in a coin. - p ~ Beta(1, 1) - - # The number of observations. - N = length(y) - for n in 1:N - # Heads or tails of a coin are drawn from a Bernoulli distribution. - y[n] ~ Bernoulli(p) - end -end -``` - - -## Setting HMC Sampler -```{julia} -# Settings of the Hamiltonian Monte Carlo (HMC) sampler. -iterations = 1000 -ϵ = 0.05 -τ = 10 - -# Start sampling. -chain = sample(coinflip(data), HMC(ϵ, τ), iterations, progress=false) -``` - - -## Plot a summary -```{julia} -# Plot a summary of the sampling process for the parameter p, i.e. the probability of heads in a coin. -histogram(chain[:p]) +--- +pagetitle: Quick Start +title: Probabilistic Programming in Thirty Seconds +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +If you are already well-versed in probabilistic programming and want to take a quick look at how Turing's syntax works or otherwise just want a model to start with, we have provided a complete Bayesian coin-flipping model below. + +This example can be run wherever you have Julia installed (see [Getting Started]({{< meta site-url >}}/dev/docs/using-turing/getting-started/), but you will need to install the packages `Turing` and `StatsPlots` if you have not done so already. + +This is an excerpt from a more formal example which can be found in the documentation website [here]({{< meta site-url >}}/dev/docs/tutorials/introduction/). + +## Import Libraries +```{julia} +# Import libraries. +using Turing, StatsPlots, Random +``` + +```{julia} +# Set the true probability of heads in a coin. +p_true = 0.5 + +# Iterate from having seen 0 observations to 100 observations. +Ns = 0:100 +``` + +```{julia} +# Draw data from a Bernoulli distribution, i.e. draw heads or tails. +Random.seed!(12) +data = rand(Bernoulli(p_true), last(Ns)) +``` + + +## Declare Turing Model +```{julia} +# Declare our Turing model. +@model function coinflip(y) + # Our prior belief about the probability of heads in a coin. + p ~ Beta(1, 1) + + # The number of observations. + N = length(y) + for n in 1:N + # Heads or tails of a coin are drawn from a Bernoulli distribution. + y[n] ~ Bernoulli(p) + end +end +``` + + +## Setting HMC Sampler +```{julia} +# Settings of the Hamiltonian Monte Carlo (HMC) sampler. +iterations = 1000 +ϵ = 0.05 +τ = 10 + +# Start sampling. +chain = sample(coinflip(data), HMC(ϵ, τ), iterations, progress=false) +``` + + +## Plot a summary +```{julia} +# Plot a summary of the sampling process for the parameter p, i.e. the probability of heads in a coin. +histogram(chain[:p]) ``` \ No newline at end of file diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-15-using-turing-sampler-viz/Project.toml b/tutorials/docs-15-using-turing-sampler-viz/Project.toml old mode 100644 new mode 100755 index f430df979..eab772c16 --- a/tutorials/docs-15-using-turing-sampler-viz/Project.toml +++ b/tutorials/docs-15-using-turing-sampler-viz/Project.toml @@ -1,6 +1,6 @@ -[deps] -Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" -StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" -Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +[deps] +Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" +Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/docs-15-using-turing-sampler-viz/index.qmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd old mode 100644 new mode 100755 index 6475f17f6..1bc1b424b --- a/tutorials/docs-15-using-turing-sampler-viz/index.qmd +++ b/tutorials/docs-15-using-turing-sampler-viz/index.qmd @@ -1,190 +1,197 @@ ---- -title: Sampler Visualization -engine: julia ---- - -## Introduction - -### The Code - -For each sampler, we will use the same code to plot sampler paths. The block below loads the relevant libraries and defines a function for plotting the sampler's trajectory across the posterior. - -The Turing model definition used here is not especially practical, but it is designed in such a way as to produce visually interesting posterior surfaces to show how different samplers move along the distribution. - -```{julia} -ENV["GKS_ENCODING"] = "utf-8" # Allows the use of unicode characters in Plots.jl -using Plots -using StatsPlots -using Turing -using Random -using Bijectors - -# Set a seed. -Random.seed!(0) - -# Define a strange model. -@model function gdemo(x) - s² ~ InverseGamma(2, 3) - m ~ Normal(0, sqrt(s²)) - bumps = sin(m) + cos(m) - m = m + 5 * bumps - for i in eachindex(x) - x[i] ~ Normal(m, sqrt(s²)) - end - return s², m -end - -# Define our data points. -x = [1.5, 2.0, 13.0, 2.1, 0.0] - -# Set up the model call, sample from the prior. -model = gdemo(x) - -# Evaluate surface at coordinates. -evaluate(m1, m2) = logjoint(model, (m=m2, s²=invlink.(Ref(InverseGamma(2, 3)), m1))) - -function plot_sampler(chain; label="") - # Extract values from chain. - val = get(chain, [:s², :m, :lp]) - ss = link.(Ref(InverseGamma(2, 3)), val.s²) - ms = val.m - lps = val.lp - - # How many surface points to sample. - granularity = 100 - - # Range start/stop points. - spread = 0.5 - σ_start = minimum(ss) - spread * std(ss) - σ_stop = maximum(ss) + spread * std(ss) - μ_start = minimum(ms) - spread * std(ms) - μ_stop = maximum(ms) + spread * std(ms) - σ_rng = collect(range(σ_start; stop=σ_stop, length=granularity)) - μ_rng = collect(range(μ_start; stop=μ_stop, length=granularity)) - - # Make surface plot. - p = surface( - σ_rng, - μ_rng, - evaluate; - camera=(30, 65), - # ticks=nothing, - colorbar=false, - color=:inferno, - title=label, - ) - - line_range = 1:length(ms) - - scatter3d!( - ss[line_range], - ms[line_range], - lps[line_range]; - mc=:viridis, - marker_z=collect(line_range), - msw=0, - legend=false, - colorbar=false, - alpha=0.5, - xlabel="σ", - ylabel="μ", - zlabel="Log probability", - title=label, - ) - - return p -end; -``` - -```{julia} -#| output: false -setprogress!(false) -``` - -## Samplers - -### Gibbs - -Gibbs sampling tends to exhibit a "jittery" trajectory. The example below combines `HMC` and `PG` sampling to traverse the posterior. - -```{julia} -c = sample(model, Gibbs(HMC(0.01, 5, :s²), PG(20, :m)), 1000) -plot_sampler(c) -``` - -### HMC - -Hamiltonian Monte Carlo (HMC) sampling is a typical sampler to use, as it tends to be fairly good at converging in a efficient manner. It can often be tricky to set the correct parameters for this sampler however, and the `NUTS` sampler is often easier to run if you don't want to spend too much time fiddling with step size and and the number of steps to take. Note however that `HMC` does not explore the positive values μ very well, likely due to the leapfrog and step size parameter settings. - -```{julia} -c = sample(model, HMC(0.01, 10), 1000) -plot_sampler(c) -``` - -### HMCDA - -The HMCDA sampler is an implementation of the Hamiltonian Monte Carlo with Dual Averaging algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. - -```{julia} -c = sample(model, HMCDA(200, 0.65, 0.3), 1000) -plot_sampler(c) -``` - -### MH - -Metropolis-Hastings (MH) sampling is one of the earliest Markov Chain Monte Carlo methods. MH sampling does not "move" a lot, unlike many of the other samplers implemented in Turing. Typically a much longer chain is required to converge to an appropriate parameter estimate. - -The plot below only uses 1,000 iterations of Metropolis-Hastings. - -```{julia} -c = sample(model, MH(), 1000) -plot_sampler(c) -``` - -As you can see, the MH sampler doesn't move parameter estimates very often. - -### NUTS - -The No U-Turn Sampler (NUTS) is an implementation of the algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. - -NUTS tends to be very good at traversing complex posteriors quickly. - - -```{julia} -c = sample(model, NUTS(0.65), 1000) -plot_sampler(c) -``` - -The only parameter that needs to be set other than the number of iterations to run is the target acceptance rate. In the Hoffman and Gelman paper, they note that a target acceptance rate of 0.65 is typical. - -Here is a plot showing a very high acceptance rate. Note that it appears to "stick" to a mode and is not particularly good at exploring the posterior as compared to the 0.65 target acceptance ratio case. - -```{julia} -c = sample(model, NUTS(0.95), 1000) -plot_sampler(c) -``` - -An exceptionally low acceptance rate will show very few moves on the posterior: - -```{julia} -c = sample(model, NUTS(0.2), 1000) -plot_sampler(c) -``` - -### PG - -The Particle Gibbs (PG) sampler is an implementation of an algorithm from the paper "Particle Markov chain Monte Carlo methods" by Andrieu, Doucet, and Holenstein (2010). The interested reader can learn more [here](https://rss.onlinelibrary.wiley.com/doi/full/10.1111/j.1467-9868.2009.00736.x). - -The two parameters are the number of particles, and the number of iterations. The plot below shows the use of 20 particles. - -```{julia} -c = sample(model, PG(20), 1000) -plot_sampler(c) -``` - -Next, we plot using 50 particles. - -```{julia} -c = sample(model, PG(50), 1000) -plot_sampler(c) +--- +title: Sampler Visualization +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +## Introduction + +### The Code + +For each sampler, we will use the same code to plot sampler paths. The block below loads the relevant libraries and defines a function for plotting the sampler's trajectory across the posterior. + +The Turing model definition used here is not especially practical, but it is designed in such a way as to produce visually interesting posterior surfaces to show how different samplers move along the distribution. + +```{julia} +ENV["GKS_ENCODING"] = "utf-8" # Allows the use of unicode characters in Plots.jl +using Plots +using StatsPlots +using Turing +using Random +using Bijectors + +# Set a seed. +Random.seed!(0) + +# Define a strange model. +@model function gdemo(x) + s² ~ InverseGamma(2, 3) + m ~ Normal(0, sqrt(s²)) + bumps = sin(m) + cos(m) + m = m + 5 * bumps + for i in eachindex(x) + x[i] ~ Normal(m, sqrt(s²)) + end + return s², m +end + +# Define our data points. +x = [1.5, 2.0, 13.0, 2.1, 0.0] + +# Set up the model call, sample from the prior. +model = gdemo(x) + +# Evaluate surface at coordinates. +evaluate(m1, m2) = logjoint(model, (m=m2, s²=invlink.(Ref(InverseGamma(2, 3)), m1))) + +function plot_sampler(chain; label="") + # Extract values from chain. + val = get(chain, [:s², :m, :lp]) + ss = link.(Ref(InverseGamma(2, 3)), val.s²) + ms = val.m + lps = val.lp + + # How many surface points to sample. + granularity = 100 + + # Range start/stop points. + spread = 0.5 + σ_start = minimum(ss) - spread * std(ss) + σ_stop = maximum(ss) + spread * std(ss) + μ_start = minimum(ms) - spread * std(ms) + μ_stop = maximum(ms) + spread * std(ms) + σ_rng = collect(range(σ_start; stop=σ_stop, length=granularity)) + μ_rng = collect(range(μ_start; stop=μ_stop, length=granularity)) + + # Make surface plot. + p = surface( + σ_rng, + μ_rng, + evaluate; + camera=(30, 65), + # ticks=nothing, + colorbar=false, + color=:inferno, + title=label, + ) + + line_range = 1:length(ms) + + scatter3d!( + ss[line_range], + ms[line_range], + lps[line_range]; + mc=:viridis, + marker_z=collect(line_range), + msw=0, + legend=false, + colorbar=false, + alpha=0.5, + xlabel="σ", + ylabel="μ", + zlabel="Log probability", + title=label, + ) + + return p +end; +``` + +```{julia} +#| output: false +setprogress!(false) +``` + +## Samplers + +### Gibbs + +Gibbs sampling tends to exhibit a "jittery" trajectory. The example below combines `HMC` and `PG` sampling to traverse the posterior. + +```{julia} +c = sample(model, Gibbs(HMC(0.01, 5, :s²), PG(20, :m)), 1000) +plot_sampler(c) +``` + +### HMC + +Hamiltonian Monte Carlo (HMC) sampling is a typical sampler to use, as it tends to be fairly good at converging in a efficient manner. It can often be tricky to set the correct parameters for this sampler however, and the `NUTS` sampler is often easier to run if you don't want to spend too much time fiddling with step size and and the number of steps to take. Note however that `HMC` does not explore the positive values μ very well, likely due to the leapfrog and step size parameter settings. + +```{julia} +c = sample(model, HMC(0.01, 10), 1000) +plot_sampler(c) +``` + +### HMCDA + +The HMCDA sampler is an implementation of the Hamiltonian Monte Carlo with Dual Averaging algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. + +```{julia} +c = sample(model, HMCDA(200, 0.65, 0.3), 1000) +plot_sampler(c) +``` + +### MH + +Metropolis-Hastings (MH) sampling is one of the earliest Markov Chain Monte Carlo methods. MH sampling does not "move" a lot, unlike many of the other samplers implemented in Turing. Typically a much longer chain is required to converge to an appropriate parameter estimate. + +The plot below only uses 1,000 iterations of Metropolis-Hastings. + +```{julia} +c = sample(model, MH(), 1000) +plot_sampler(c) +``` + +As you can see, the MH sampler doesn't move parameter estimates very often. + +### NUTS + +The No U-Turn Sampler (NUTS) is an implementation of the algorithm found in the paper "The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte Carlo" by Hoffman and Gelman (2011). The paper can be found on [arXiv](https://arxiv.org/abs/1111.4246) for the interested reader. + +NUTS tends to be very good at traversing complex posteriors quickly. + + +```{julia} +c = sample(model, NUTS(0.65), 1000) +plot_sampler(c) +``` + +The only parameter that needs to be set other than the number of iterations to run is the target acceptance rate. In the Hoffman and Gelman paper, they note that a target acceptance rate of 0.65 is typical. + +Here is a plot showing a very high acceptance rate. Note that it appears to "stick" to a mode and is not particularly good at exploring the posterior as compared to the 0.65 target acceptance ratio case. + +```{julia} +c = sample(model, NUTS(0.95), 1000) +plot_sampler(c) +``` + +An exceptionally low acceptance rate will show very few moves on the posterior: + +```{julia} +c = sample(model, NUTS(0.2), 1000) +plot_sampler(c) +``` + +### PG + +The Particle Gibbs (PG) sampler is an implementation of an algorithm from the paper "Particle Markov chain Monte Carlo methods" by Andrieu, Doucet, and Holenstein (2010). The interested reader can learn more [here](https://rss.onlinelibrary.wiley.com/doi/full/10.1111/j.1467-9868.2009.00736.x). + +The two parameters are the number of particles, and the number of iterations. The plot below shows the use of 20 particles. + +```{julia} +c = sample(model, PG(20), 1000) +plot_sampler(c) +``` + +Next, we plot using 50 particles. + +```{julia} +c = sample(model, PG(50), 1000) +plot_sampler(c) ``` \ No newline at end of file diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-16-using-turing-external-samplers/Project.toml b/tutorials/docs-16-using-turing-external-samplers/Project.toml old mode 100644 new mode 100755 diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd old mode 100644 new mode 100755 index 05525f725..305a88019 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -1,172 +1,179 @@ ---- -title: Using External Sampler -engine: julia ---- - -## Using External Samplers on Turing Models - -`Turing` provides several wrapped samplers from external sampling libraries, e.g., HMC samplers from `AdvancedHMC`. -These wrappers allow new users to seamlessly sample statistical models without leaving `Turing` -However, these wrappers might only sometimes be complete, missing some functionality from the wrapped sampling library. -Moreover, users might want to use samplers currently not wrapped within `Turing`. - -For these reasons, `Turing` also makes running external samplers on Turing models easy without any necessary modifications or wrapping! -Throughout, we will use a 10-dimensional Neal's funnel as a running example:: - -```{julia} -# Import libraries. -using Turing, Random, LinearAlgebra - -d = 10 -@model function funnel() - θ ~ Truncated(Normal(0, 3), -3, 3) - z ~ MvNormal(zeros(d - 1), exp(θ) * I) - return x ~ MvNormal(z, I) -end -``` - -Now we sample the model to generate some observations, which we can then condition on. - -```{julia} -(; x) = rand(funnel() | (θ=0,)) -model = funnel() | (; x); -``` - -Users can use any sampler algorithm to sample this model if it follows the `AbstractMCMC` API. -Before discussing how this is done in practice, giving a high-level description of the process is interesting. -Imagine that we created an instance of an external sampler that we will call `spl` such that `typeof(spl)<:AbstractMCMC.AbstractSampler`. -In order to avoid type ambiguity within Turing, at the moment it is necessary to declare `spl` as an external sampler to Turing `espl = externalsampler(spl)`, where `externalsampler(s::AbstractMCMC.AbstractSampler)` is a Turing function that types our external sampler adequately. - -An excellent point to start to show how this is done in practice is by looking at the sampling library `AdvancedMH` ([`AdvancedMH`'s GitHub](https://github.com/TuringLang/AdvancedMH.jl)) for Metropolis-Hastings (MH) methods. -Let's say we want to use a random walk Metropolis-Hastings sampler without specifying the proposal distributions. -The code below constructs an MH sampler using a multivariate Gaussian distribution with zero mean and unit variance in `d` dimensions as a random walk proposal. - -```{julia} -# Importing the sampling library -using AdvancedMH -rwmh = AdvancedMH.RWMH(d) -``` - -```{julia} -#| output: false -setprogress!(false) -``` - -Sampling is then as easy as: - - -```{julia} -chain = sample(model, externalsampler(rwmh), 10_000) -``` - -## Going beyond the Turing API - -As previously mentioned, the Turing wrappers can often limit the capabilities of the sampling libraries they wrap. -`AdvancedHMC`[^1] ([`AdvancedHMC`'s GitHub](https://github.com/TuringLang/AdvancedHMC.jl)) is a clear example of this. A common practice when performing HMC is to provide an initial guess for the mass matrix. -However, the native HMC sampler within Turing only allows the user to specify the type of the mass matrix despite the two options being possible within `AdvancedHMC`. -Thankfully, we can use Turing's support for external samplers to define an HMC sampler with a custom mass matrix in `AdvancedHMC` and then use it to sample our Turing model. - -We will use the library `Pathfinder`[^2] ((`Pathfinder`'s GitHub)[https://github.com/mlcolab/Pathfinder.jl]) to construct our estimate of mass matrix. -`Pathfinder` is a variational inference algorithm that first finds the maximum a posteriori (MAP) estimate of a target posterior distribution and then uses the trace of the optimization to construct a sequence of multivariate normal approximations to the target distribution. -In this process, `Pathfinder` computes an estimate of the mass matrix the user can access. - -The code below shows this can be done in practice. - -```{julia} -using AdvancedHMC, Pathfinder -# Running pathfinder -draws = 1_000 -result_multi = multipathfinder(model, draws; nruns=8) - -# Estimating the metric -inv_metric = result_multi.pathfinder_results[1].fit_distribution.Σ -metric = DenseEuclideanMetric(Matrix(inv_metric)) - -# Creating an AdvancedHMC NUTS sampler with the custom metric. -n_adapts = 1000 # Number of adaptation steps -tap = 0.9 # Large target acceptance probability to deal with the funnel structure of the posterior -nuts = AdvancedHMC.NUTS(tap; metric=metric) - -# Sample -chain = sample(model, externalsampler(nuts), 10_000; n_adapts=1_000) -``` - -## Using new inference methods - -So far we have used Turing's support for external samplers to go beyond the capabilities of the wrappers. -We want to use this support to employ a sampler not supported within Turing's ecosystem yet. -We will use the recently developed Micro-Cannoncial Hamiltonian Monte Carlo (MCHMC) sampler to showcase this. -MCHMC[[^3],[^4]] ((MCHMC's GitHub)[https://github.com/JaimeRZP/MicroCanonicalHMC.jl]) is HMC sampler that uses one single Hamiltonian energy level to explore the whole parameter space. -This is achieved by simulating the dynamics of a microcanonical Hamiltonian with an additional noise term to ensure ergodicity. - -Using this as well as other inference methods outside the Turing ecosystem is as simple as executing the code shown below: - -```{julia} -using MicroCanonicalHMC -# Create MCHMC sampler -n_adapts = 1_000 # adaptation steps -tev = 0.01 # target energy variance -mchmc = MCHMC(n_adapts, tev; adaptive=true) - -# Sample -chain = sample(model, externalsampler(mchmc), 10_000) -``` - -The only requirement to work with `externalsampler` is that the provided `sampler` must implement the AbstractMCMC.jl-interface [INSERT LINK] for a `model` of type `AbstractMCMC.LogDensityModel` [INSERT LINK]. - -As previously stated, in order to use external sampling libraries within `Turing` they must follow the `AbstractMCMC` API. -In this section, we will briefly dwell on what this entails. -First and foremost, the sampler should be a subtype of `AbstractMCMC.AbstractSampler`. -Second, the stepping function of the MCMC algorithm must be made defined using `AbstractMCMC.step` and follow the structure below: - -```{julia} -#| eval: false -# First step -function AbstractMCMC.step{T<:AbstractMCMC.AbstractSampler}( - rng::Random.AbstractRNG, - model::AbstractMCMC.LogDensityModel, - spl::T; - kwargs..., -) - [...] - return transition, sample -end - -# N+1 step -function AbstractMCMC.step{T<:AbstractMCMC.AbstractSampler}( - rng::Random.AbstractRNG, - model::AbstractMCMC.LogDensityModel, - sampler::T, - state; - kwargs..., -) - [...] - return transition, sample -end -``` - -There are several characteristics to note in these functions: - - - There must be two `step` functions: - - + A function that performs the first step and initializes the sampler. - + A function that performs the following steps and takes an extra input, `state`, which carries the initialization information. - - - The functions must follow the displayed signatures. - - The output of the functions must be a transition, the current state of the sampler, and a sample, what is saved to the MCMC chain. - -The last requirement is that the transition must be structured with a field `θ`, which contains the values of the parameters of the model for said transition. -This allows `Turing` to seamlessly extract the parameter values at each step of the chain when bundling the chains. -Note that if the external sampler produces transitions that Turing cannot parse, the bundling of the samples will be different or fail. - -For practical examples of how to adapt a sampling library to the `AbstractMCMC` interface, the readers can consult the following libraries: - - - [AdvancedMH](https://github.com/TuringLang/AdvancedMH.jl/blob/458a602ac32a8514a117d4c671396a9ba8acbdab/src/mh-core.jl#L73-L115) - - [AdvancedHMC](https://github.com/TuringLang/AdvancedHMC.jl/blob/762e55f894d142495a41a6eba0eed9201da0a600/src/abstractmcmc.jl#L102-L170) - - [MicroCanonicalHMC](https://github.com/JaimeRZP/MicroCanonicalHMC.jl/blob/master/src/abstractmcmc.jl) - - -[^1]: Xu et al., [AdvancedHMC.jl: A robust, modular and efficient implementation of advanced HMC algorithms](http://proceedings.mlr.press/v118/xu20a/xu20a.pdf), 2019 -[^2]: Zhang et al., [Pathfinder: Parallel quasi-Newton variational inference](https://arxiv.org/abs/2108.03782), 2021 -[^3]: Robnik et al, [Microcanonical Hamiltonian Monte Carlo](https://arxiv.org/abs/2212.08549), 2022 +--- +title: Using External Sampler +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate("."); +``` + +## Using External Samplers on Turing Models + +`Turing` provides several wrapped samplers from external sampling libraries, e.g., HMC samplers from `AdvancedHMC`. +These wrappers allow new users to seamlessly sample statistical models without leaving `Turing` +However, these wrappers might only sometimes be complete, missing some functionality from the wrapped sampling library. +Moreover, users might want to use samplers currently not wrapped within `Turing`. + +For these reasons, `Turing` also makes running external samplers on Turing models easy without any necessary modifications or wrapping! +Throughout, we will use a 10-dimensional Neal's funnel as a running example:: + +```{julia} +# Import libraries. +using Turing, Random, LinearAlgebra + +d = 10 +@model function funnel() + θ ~ Truncated(Normal(0, 3), -3, 3) + z ~ MvNormal(zeros(d - 1), exp(θ) * I) + return x ~ MvNormal(z, I) +end +``` + +Now we sample the model to generate some observations, which we can then condition on. + +```{julia} +(; x) = rand(funnel() | (θ=0,)) +model = funnel() | (; x); +``` + +Users can use any sampler algorithm to sample this model if it follows the `AbstractMCMC` API. +Before discussing how this is done in practice, giving a high-level description of the process is interesting. +Imagine that we created an instance of an external sampler that we will call `spl` such that `typeof(spl)<:AbstractMCMC.AbstractSampler`. +In order to avoid type ambiguity within Turing, at the moment it is necessary to declare `spl` as an external sampler to Turing `espl = externalsampler(spl)`, where `externalsampler(s::AbstractMCMC.AbstractSampler)` is a Turing function that types our external sampler adequately. + +An excellent point to start to show how this is done in practice is by looking at the sampling library `AdvancedMH` ([`AdvancedMH`'s GitHub](https://github.com/TuringLang/AdvancedMH.jl)) for Metropolis-Hastings (MH) methods. +Let's say we want to use a random walk Metropolis-Hastings sampler without specifying the proposal distributions. +The code below constructs an MH sampler using a multivariate Gaussian distribution with zero mean and unit variance in `d` dimensions as a random walk proposal. + +```{julia} +# Importing the sampling library +using AdvancedMH +rwmh = AdvancedMH.RWMH(d) +``` + +```{julia} +#| output: false +setprogress!(false) +``` + +Sampling is then as easy as: + + +```{julia} +chain = sample(model, externalsampler(rwmh), 10_000) +``` + +## Going beyond the Turing API + +As previously mentioned, the Turing wrappers can often limit the capabilities of the sampling libraries they wrap. +`AdvancedHMC`[^1] ([`AdvancedHMC`'s GitHub](https://github.com/TuringLang/AdvancedHMC.jl)) is a clear example of this. A common practice when performing HMC is to provide an initial guess for the mass matrix. +However, the native HMC sampler within Turing only allows the user to specify the type of the mass matrix despite the two options being possible within `AdvancedHMC`. +Thankfully, we can use Turing's support for external samplers to define an HMC sampler with a custom mass matrix in `AdvancedHMC` and then use it to sample our Turing model. + +We will use the library `Pathfinder`[^2] ((`Pathfinder`'s GitHub)[https://github.com/mlcolab/Pathfinder.jl]) to construct our estimate of mass matrix. +`Pathfinder` is a variational inference algorithm that first finds the maximum a posteriori (MAP) estimate of a target posterior distribution and then uses the trace of the optimization to construct a sequence of multivariate normal approximations to the target distribution. +In this process, `Pathfinder` computes an estimate of the mass matrix the user can access. + +The code below shows this can be done in practice. + +```{julia} +using AdvancedHMC, Pathfinder +# Running pathfinder +draws = 1_000 +result_multi = multipathfinder(model, draws; nruns=8) + +# Estimating the metric +inv_metric = result_multi.pathfinder_results[1].fit_distribution.Σ +metric = DenseEuclideanMetric(Matrix(inv_metric)) + +# Creating an AdvancedHMC NUTS sampler with the custom metric. +n_adapts = 1000 # Number of adaptation steps +tap = 0.9 # Large target acceptance probability to deal with the funnel structure of the posterior +nuts = AdvancedHMC.NUTS(tap; metric=metric) + +# Sample +chain = sample(model, externalsampler(nuts), 10_000; n_adapts=1_000) +``` + +## Using new inference methods + +So far we have used Turing's support for external samplers to go beyond the capabilities of the wrappers. +We want to use this support to employ a sampler not supported within Turing's ecosystem yet. +We will use the recently developed Micro-Cannoncial Hamiltonian Monte Carlo (MCHMC) sampler to showcase this. +MCHMC[[^3],[^4]] ((MCHMC's GitHub)[https://github.com/JaimeRZP/MicroCanonicalHMC.jl]) is HMC sampler that uses one single Hamiltonian energy level to explore the whole parameter space. +This is achieved by simulating the dynamics of a microcanonical Hamiltonian with an additional noise term to ensure ergodicity. + +Using this as well as other inference methods outside the Turing ecosystem is as simple as executing the code shown below: + +```{julia} +using MicroCanonicalHMC +# Create MCHMC sampler +n_adapts = 1_000 # adaptation steps +tev = 0.01 # target energy variance +mchmc = MCHMC(n_adapts, tev; adaptive=true) + +# Sample +chain = sample(model, externalsampler(mchmc), 10_000) +``` + +The only requirement to work with `externalsampler` is that the provided `sampler` must implement the AbstractMCMC.jl-interface [INSERT LINK] for a `model` of type `AbstractMCMC.LogDensityModel` [INSERT LINK]. + +As previously stated, in order to use external sampling libraries within `Turing` they must follow the `AbstractMCMC` API. +In this section, we will briefly dwell on what this entails. +First and foremost, the sampler should be a subtype of `AbstractMCMC.AbstractSampler`. +Second, the stepping function of the MCMC algorithm must be made defined using `AbstractMCMC.step` and follow the structure below: + +```{julia} +#| eval: false +# First step +function AbstractMCMC.step{T<:AbstractMCMC.AbstractSampler}( + rng::Random.AbstractRNG, + model::AbstractMCMC.LogDensityModel, + spl::T; + kwargs..., +) + [...] + return transition, sample +end + +# N+1 step +function AbstractMCMC.step{T<:AbstractMCMC.AbstractSampler}( + rng::Random.AbstractRNG, + model::AbstractMCMC.LogDensityModel, + sampler::T, + state; + kwargs..., +) + [...] + return transition, sample +end +``` + +There are several characteristics to note in these functions: + + - There must be two `step` functions: + + + A function that performs the first step and initializes the sampler. + + A function that performs the following steps and takes an extra input, `state`, which carries the initialization information. + + - The functions must follow the displayed signatures. + - The output of the functions must be a transition, the current state of the sampler, and a sample, what is saved to the MCMC chain. + +The last requirement is that the transition must be structured with a field `θ`, which contains the values of the parameters of the model for said transition. +This allows `Turing` to seamlessly extract the parameter values at each step of the chain when bundling the chains. +Note that if the external sampler produces transitions that Turing cannot parse, the bundling of the samples will be different or fail. + +For practical examples of how to adapt a sampling library to the `AbstractMCMC` interface, the readers can consult the following libraries: + + - [AdvancedMH](https://github.com/TuringLang/AdvancedMH.jl/blob/458a602ac32a8514a117d4c671396a9ba8acbdab/src/mh-core.jl#L73-L115) + - [AdvancedHMC](https://github.com/TuringLang/AdvancedHMC.jl/blob/762e55f894d142495a41a6eba0eed9201da0a600/src/abstractmcmc.jl#L102-L170) + - [MicroCanonicalHMC](https://github.com/JaimeRZP/MicroCanonicalHMC.jl/blob/master/src/abstractmcmc.jl) + + +[^1]: Xu et al., [AdvancedHMC.jl: A robust, modular and efficient implementation of advanced HMC algorithms](http://proceedings.mlr.press/v118/xu20a/xu20a.pdf), 2019 +[^2]: Zhang et al., [Pathfinder: Parallel quasi-Newton variational inference](https://arxiv.org/abs/2108.03782), 2021 +[^3]: Robnik et al, [Microcanonical Hamiltonian Monte Carlo](https://arxiv.org/abs/2212.08549), 2022 [^4]: Robnik and Seljak, [Langevine Hamiltonian Monte Carlo](https://arxiv.org/abs/2303.18221), 2023 \ No newline at end of file From b69cfe3662e32e8c0c742ba488de414516fa01e0 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 20:26:49 +0530 Subject: [PATCH 18/25] added styles --- theming/styles.css | 49 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100755 theming/styles.css diff --git a/theming/styles.css b/theming/styles.css new file mode 100755 index 000000000..06a2b93ec --- /dev/null +++ b/theming/styles.css @@ -0,0 +1,49 @@ +/* css styles */ +/* .cell-output { + background-color: #f1f3f5; +} */ + +/* .cell-output img { + max-width: 100%; + height: auto; +} */ + +/* .cell-output-display pre { + word-break: break-wor !important; + white-space: pre-wrap !important; +} + */ + +.navbar a:hover { + text-decoration: none; +} + +.cell-output { + border: 1px dashed; +} + +.cell-bg { + background-color: #f1f3f5; +} + +.cell-output-stdout code { + word-break: break-wor !important; + white-space: pre-wrap !important; +} + + +.cell-output-display svg { + height: fit-content; + width: fit-content; +} + +.cell-output-display img { + max-width: 100%; + max-height: 100%; + object-fit: contain; +} + +.nav-footer-center { + display: flex; + justify-content: center; +} \ No newline at end of file From 110a8b32287d0707af7d76d9fa52ee389a875975 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 20:27:05 +0530 Subject: [PATCH 19/25] testing workflow --- .gitignore | 3 ++- _quarto.yml | 4 +-- assets/favicon.ico | Bin 0 -> 15086 bytes assets/images/turing-logo-wide.svg | 42 +++++++++++++++++++++++++++++ assets/images/turing-logo.svg | 28 +++++++++++++++++++ 5 files changed, 74 insertions(+), 3 deletions(-) create mode 100755 assets/favicon.ico create mode 100755 assets/images/turing-logo-wide.svg create mode 100755 assets/images/turing-logo.svg diff --git a/.gitignore b/.gitignore index 45b1b80b4..6a7f1f64e 100644 --- a/.gitignore +++ b/.gitignore @@ -18,4 +18,5 @@ Testing/ .vscode _freeze _site -.quarto \ No newline at end of file +.quarto +/.quarto/ diff --git a/_quarto.yml b/_quarto.yml index 8f5977cc8..ad3a96f60 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -39,7 +39,7 @@ website: collapse-level: 1 contents: - section: "Documentation" - href: docs/index.qmd + # href: tutorials/index.qmd contents: - section: "Using Turing" collapse-level: 1 @@ -47,7 +47,7 @@ website: contents: - tutorials/docs-00-getting-started/index.qmd - text: "Quick Start" - href: docs/docs-14-using-turing-quick-start/index.qmd + href: tutorials/docs-14-using-turing-quick-start/index.qmd - tutorials/docs-12-using-turing-guide/index.qmd - tutorials/docs-09-using-turing-advanced/index.qmd - tutorials/docs-10-using-turing-autodiff/index.qmd diff --git a/assets/favicon.ico b/assets/favicon.ico new file mode 100755 index 0000000000000000000000000000000000000000..c78db4adf60bdbe402b946f97388bf8ad6c20413 GIT binary patch literal 15086 zcmeI32~ZSQ8pj)v-~nn33UUlR2iG{jTwDP`A##|NTO^8zMnseZB`C__;K2>D#uyTf zN5W<`L1UsQ9#L1LNaPk!k(A`vl1h~tYpu$fb*1JZ4xZWUoo1ZvQfYmWl)8R0VG|y3A&8- zueJrWEud`yZ3}2y;D4Jm@0WIl3`Ded$pG@;SdI>jIu&f_qp+64Cmk5eb=9*RVn@_|(hwA0xYrd+npi>V7 zgLB{qa31Wg4>_UO9-CR_rEvcj+W9h_Z<%GgJnp1uUhZRIRBF9V!or<`RIm30>91R; z`s}^W@EP4-{pyTcf=)*^gq*kpF5Cz_OS)5o+PL|&Ik&*#8=Hg$jMU{)yG&Z=##V&R z@n9?X2^0ZGFqY(-6izd?$me`#nQ!?qr$ldp+_8D4Oj3UfZLrye-(kf17>b2&Q&0*T zf#YE7a`P=EINv|p2fzOS8p`dZwG-~lKk^EETkq(6?_5C0^`Bd$GtF$Tfiw1toLq~Ieq_wR9d^BG3@9v)Ncm?sy?85 z61WUfNFFrDgC@XJEvv~sVsb$>$Orx2|Gj-fO8_^IzG*-Ez}ErJS6eQJl>bm0dMu%L z8TL2IdV^cI?xwr&?i)h)cVHu%KO7digTQUzJs5w`GnJdqsTQt`De;!q-Y@a{w(N0K z*?4tzQFaTcc(s`tEtA&zL;Ec-U0qpC)1aF?H^_7DI4~T@5A^6*c zxvVBvT^*Dg1I~a9k`LWGK^f3fSN?g@pxXhof~djxF)J{S_1)<8ILY@!n?zbm?#GF$ z^`M&%ZsLBK?ZSO98D;9gQq^+9wGZv&`F9Bn_)JTAXJw)!%l^K{!c8mj9K8u$J_E-so;#sQA$rHtKEt+CxE_cx#8T0cJj`z1!n#EMc(?Vu&*1Own(p97MN#3e>QX- z1wGd_bdLfD@SNK2LO&dXJaUX_{rMcObZ8^*HS#=F-gByck!}mFH-=O!- z>T)?4+O7kdEf4JzK^5}fcC!1?3VGzYGn37Kkrw)5z%3x{9S8g5IrR}Z!+3TWpg*t( z@8heYup$Yrj~3_)WXnUl4QQo{r?|<*O_9iJ0E2o*vOYAm&`0_*W#A}ymGy()3jle~ z`j9l}a|5^dnR2mAT7Lxk^4PLS_XF3_{v6!j_5(Zc79j7q z4M3>_`piKK`ZfOOi>-yeb6_0NgLL#+=?kKWEHj*&D@cFlGvNgtgDbRN?AA^C!x=!? zr|i}^7CO(C(>ShmNMDKcO7PVCt*@t%*@Mn?;4FW$cr3K<#kIbd zmt{K*Y1epJb`f~C9)$KkkBqv3qe5pOXy$yRYmD!Kw{Rbm@2R=Cc5c|k#)si}nxVhv zxiqlHmskBu-+(J*~sdX3z%C3I+>My52hhk+(w48)*~x5eIdWYi2jD)cJ*Ivobmei`iEYy z`#NR6D`4w8UG6im9n8dg#Qu|+SWE0fW@0O`kD1~&V*g-{DD4x*v5D+=GWsP-+gVaU zER%kt%g$&zpxocxc0_5fv^gp*Q=Qmle+}xg_ZD~AyR5bB+P~w~Z53Vicc!m>(7peM zibazV9c0tol66`%m33H!hs!%gML&M_+hO zUw8rdHuvXe%4Q0q*V?*pJH|ZiNxA-E48|I{m{WDZ9KToba>eYKnQs2pg%-XTYYgD! z@q7h2R(-}3z0+rz%t`YtjY*Ddi%VM6;kwCrFDH-A!TJS^Y_Rb2@w*W7=eq@IGpa;k z1qbC0E#y{LZiuN5LctzTS{qtkQV^F`>!X-)%~s)Z$SyASj!ojc%Y23N`-07m9JU^7 z@A_WTZw@-muM0Vz2KF}wpX9Q6y{*MAN{8NN?2fe*?P9NEXT_pcW6a@?Ma)b<=0RV- z=T~na%(fNL`E;3CmYq~8tI5K6OeW^yzP~bbp{bOY=5fZ){bKcr zxfNyC!@rrzmPPEz;4i!_B5NG?HpC8Q^9E}X+XNg0YRAq^3r!7#IksPh2ORt*-1X{; z-hL6=4ee7RnNeYf*ktbGwch!I{f*f3!4A+fH`lwa^H#?l5m8%jI7u1{9i+8A=N0ke zFb4W=_uNrt?>a;IjkpGYTnFB&^?vhfoU$95#9E#GwkzKDz_~9)eAA)C zQ!R_QtqJCE`;^1 z&LSRJA8;6ubw!iFM~ELoeM0GBtbUg;Ds3sw!NsU8IRGP3s``D)0{22qHA~qiH?F zbOvM|<}kqj9C^7LVv@B|g&-X~_w!B@^@ytv)V?P*@u#h$ZGjiv0$t+_>i_;oJ<@&B z85h*aB(^gQ=RBkEJkOlB1QrUW9o#;vVD24en1^4%!F|vG8bK>)17zy}zbSvI`$Iln z$gl(rdd4aKTW26jb#$moO2=e}3D&03WQ~X}Um;h!rs!(Gah>GtfjXw2>yP3WO;z@b zXKnO!nV%B8*=>{aa(vrGU>*K^Ubf9b+xVDhd-rdRehNP}27MZj%J8ou*CfWK*slrA zz&hil{A?TL$jyp1i^m^`{=mKBtmi;X7WJM0~K(1%%7K_?@cgHL%x zq|Wgcub%gw#OrvRaM5~WZqc+p8WBSRdgj=szHeYYYthEzc|I5B;WSW|1r{L={-2TW zCbiFT^nJ*;Q3N2TjruSlc}nn#RbR;6&xK7rNR7ew@iM9F#U*(Es{KADbx@bATP8kq z@tqv7V0CnX$mdW3f1|4Ve97*fBDE;2R8xmqGzwBd6{-@o?x z7JJq)uz9$a#)G#7X&y=Tfh9fPF>L-|Eb2#skinEyR|a*-`>Us4tFFvQrFD&klJQWA WYA55O3Kf)NrATY`TZY + + + + + + + + + + + + + + + + image/svg+xml + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/assets/images/turing-logo.svg b/assets/images/turing-logo.svg new file mode 100755 index 000000000..252e14004 --- /dev/null +++ b/assets/images/turing-logo.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file From 2cf8bb80c2797d8a67ddc1169795f4b2bd4e985a Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Wed, 22 May 2024 22:56:28 +0530 Subject: [PATCH 20/25] fixed Pkg command in all docs --- tutorials/00-introduction/index.qmd | 2 +- tutorials/01-gaussian-mixture-model/index.qmd | 2 +- tutorials/02-logistic-regression/index.qmd | 2 +- tutorials/03-bayesian-neural-network/index.qmd | 2 +- tutorials/04-hidden-markov-model/index.qmd | 2 +- tutorials/05-linear-regression/index.qmd | 2 +- tutorials/06-infinite-mixture-model/index.qmd | 2 +- tutorials/07-poisson-regression/index.qmd | 2 +- tutorials/08-multinomial-logistic-regression/index.qmd | 2 +- tutorials/09-variational-inference/index.qmd | 2 +- tutorials/10-bayesian-differential-equations/index.qmd | 2 +- tutorials/11-probabilistic-pca/index.qmd | 2 +- tutorials/12-gplvm/index.qmd | 2 +- tutorials/13-seasonal-time-series/index.qmd | 2 +- tutorials/14-minituring/index.qmd | 2 +- tutorials/15-gaussian-processes/index.qmd | 2 +- tutorials/docs-00-getting-started/index.qmd | 2 +- tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd | 2 +- tutorials/docs-05-for-developers-compiler/index.qmd | 2 +- tutorials/docs-06-for-developers-interface/index.qmd | 2 +- .../docs-07-for-developers-variational-inference/index.qmd | 2 +- tutorials/docs-09-using-turing-advanced/index.qmd | 2 +- tutorials/docs-10-using-turing-autodiff/index.qmd | 2 +- tutorials/docs-11-using-turing-dynamichmc/index.qmd | 2 +- tutorials/docs-12-using-turing-guide/index.qmd | 2 +- tutorials/docs-13-using-turing-performance-tips/index.qmd | 2 +- tutorials/docs-14-using-turing-quick-start/index.qmd | 2 +- tutorials/docs-15-using-turing-sampler-viz/index.qmd | 2 +- tutorials/docs-16-using-turing-external-samplers/index.qmd | 2 +- 29 files changed, 29 insertions(+), 29 deletions(-) diff --git a/tutorials/00-introduction/index.qmd b/tutorials/00-introduction/index.qmd index a47de8412..729cb23b1 100755 --- a/tutorials/00-introduction/index.qmd +++ b/tutorials/00-introduction/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ### Introduction diff --git a/tutorials/01-gaussian-mixture-model/index.qmd b/tutorials/01-gaussian-mixture-model/index.qmd index f6b8fdca4..5c2ae526e 100755 --- a/tutorials/01-gaussian-mixture-model/index.qmd +++ b/tutorials/01-gaussian-mixture-model/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` The following tutorial illustrates the use of Turing for clustering data using a Bayesian mixture model. diff --git a/tutorials/02-logistic-regression/index.qmd b/tutorials/02-logistic-regression/index.qmd index 9f6f5f020..74392ace1 100755 --- a/tutorials/02-logistic-regression/index.qmd +++ b/tutorials/02-logistic-regression/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` [Bayesian logistic regression](https://en.wikipedia.org/wiki/Logistic_regression#Bayesian) is the Bayesian counterpart to a common tool in machine learning, logistic regression. diff --git a/tutorials/03-bayesian-neural-network/index.qmd b/tutorials/03-bayesian-neural-network/index.qmd index 96da50272..d515b47c6 100755 --- a/tutorials/03-bayesian-neural-network/index.qmd +++ b/tutorials/03-bayesian-neural-network/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In this tutorial, we demonstrate how one can implement a Bayesian Neural Network using a combination of Turing and [Flux](https://github.com/FluxML/Flux.jl), a suite of machine learning tools. We will use Flux to specify the neural network's layers and Turing to implement the probabilistic inference, with the goal of implementing a classification algorithm. diff --git a/tutorials/04-hidden-markov-model/index.qmd b/tutorials/04-hidden-markov-model/index.qmd index e720dd40c..38004e044 100755 --- a/tutorials/04-hidden-markov-model/index.qmd +++ b/tutorials/04-hidden-markov-model/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` This tutorial illustrates training Bayesian [Hidden Markov Models](https://en.wikipedia.org/wiki/Hidden_Markov_model) (HMM) using Turing. The main goals are learning the transition matrix, emission parameter, and hidden states. For a more rigorous academic overview on Hidden Markov Models, see [An introduction to Hidden Markov Models and Bayesian Networks](http://mlg.eng.cam.ac.uk/zoubin/papers/ijprai.pdf) (Ghahramani, 2001). diff --git a/tutorials/05-linear-regression/index.qmd b/tutorials/05-linear-regression/index.qmd index a0863da7e..94ee80a87 100755 --- a/tutorials/05-linear-regression/index.qmd +++ b/tutorials/05-linear-regression/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` Turing is powerful when applied to complex hierarchical models, but it can also be put to task at common statistical procedures, like [linear regression](https://en.wikipedia.org/wiki/Linear_regression). diff --git a/tutorials/06-infinite-mixture-model/index.qmd b/tutorials/06-infinite-mixture-model/index.qmd index 1b0ea9a9e..0a9adc34d 100755 --- a/tutorials/06-infinite-mixture-model/index.qmd +++ b/tutorials/06-infinite-mixture-model/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In many applications it is desirable to allow the model to adjust its complexity to the amount of data. Consider for example the task of assigning objects into clusters or groups. This task often involves the specification of the number of groups. However, often times it is not known beforehand how many groups exist. Moreover, in some applictions, e.g. modelling topics in text documents or grouping species, the number of examples per group is heavy tailed. This makes it impossible to predefine the number of groups and requiring the model to form new groups when data points from previously unseen groups are observed. diff --git a/tutorials/07-poisson-regression/index.qmd b/tutorials/07-poisson-regression/index.qmd index e4e8ee3d3..dd25797e1 100755 --- a/tutorials/07-poisson-regression/index.qmd +++ b/tutorials/07-poisson-regression/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` This notebook is ported from the [example notebook](https://www.pymc.io/projects/examples/en/latest/generalized_linear_models/GLM-poisson-regression.html) of PyMC3 on Poisson Regression. diff --git a/tutorials/08-multinomial-logistic-regression/index.qmd b/tutorials/08-multinomial-logistic-regression/index.qmd index 7be20d437..f9dc3fde2 100755 --- a/tutorials/08-multinomial-logistic-regression/index.qmd +++ b/tutorials/08-multinomial-logistic-regression/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` [Multinomial logistic regression](https://en.wikipedia.org/wiki/Multinomial_logistic_regression) is an extension of logistic regression. Logistic regression is used to model problems in which there are exactly two possible discrete outcomes. Multinomial logistic regression is used to model problems in which there are two or more possible discrete outcomes. diff --git a/tutorials/09-variational-inference/index.qmd b/tutorials/09-variational-inference/index.qmd index 1d14e3a58..2ec41430e 100755 --- a/tutorials/09-variational-inference/index.qmd +++ b/tutorials/09-variational-inference/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In this post we'll have a look at what's know as **variational inference (VI)**, a family of _approximate_ Bayesian inference methods, and how to use it in Turing.jl as an alternative to other approaches such as MCMC. In particular, we will focus on one of the more standard VI methods called **Automatic Differentation Variational Inference (ADVI)**. diff --git a/tutorials/10-bayesian-differential-equations/index.qmd b/tutorials/10-bayesian-differential-equations/index.qmd index 92e301d4a..7aad30e06 100755 --- a/tutorials/10-bayesian-differential-equations/index.qmd +++ b/tutorials/10-bayesian-differential-equations/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` Most of the scientific community deals with the basic problem of trying to mathematically model the reality around them and this often involves dynamical systems. The general trend to model these complex dynamical systems is through the use of differential equations. diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd index b1d04981b..4175ff1e4 100755 --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ## Overview of PCA diff --git a/tutorials/12-gplvm/index.qmd b/tutorials/12-gplvm/index.qmd index 9ad1a7d02..098bb071c 100755 --- a/tutorials/12-gplvm/index.qmd +++ b/tutorials/12-gplvm/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In a previous tutorial, we have discussed latent variable models, in particular probabilistic principal component analysis (pPCA). diff --git a/tutorials/13-seasonal-time-series/index.qmd b/tutorials/13-seasonal-time-series/index.qmd index 079510eac..7cd9cde6d 100755 --- a/tutorials/13-seasonal-time-series/index.qmd +++ b/tutorials/13-seasonal-time-series/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In time series analysis we are often interested in understanding how various real-life circumstances impact our quantity of interest. diff --git a/tutorials/14-minituring/index.qmd b/tutorials/14-minituring/index.qmd index 939fb6a60..f726e94fd 100755 --- a/tutorials/14-minituring/index.qmd +++ b/tutorials/14-minituring/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In this tutorial we develop a very simple probabilistic programming language. diff --git a/tutorials/15-gaussian-processes/index.qmd b/tutorials/15-gaussian-processes/index.qmd index 312b617ce..b365b0d82 100755 --- a/tutorials/15-gaussian-processes/index.qmd +++ b/tutorials/15-gaussian-processes/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` [JuliaGPs](https://github.com/JuliaGaussianProcesses/#welcome-to-juliagps) packages integrate well with Turing.jl because they implement the Distributions.jl diff --git a/tutorials/docs-00-getting-started/index.qmd b/tutorials/docs-00-getting-started/index.qmd index 3a726782c..930419cef 100644 --- a/tutorials/docs-00-getting-started/index.qmd +++ b/tutorials/docs-00-getting-started/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ### Installation diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd index e66d5f7ef..47c88c516 100755 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` Prerequisite: [Interface guide](../interface/). diff --git a/tutorials/docs-05-for-developers-compiler/index.qmd b/tutorials/docs-05-for-developers-compiler/index.qmd index fcd7c35d9..90727078d 100755 --- a/tutorials/docs-05-for-developers-compiler/index.qmd +++ b/tutorials/docs-05-for-developers-compiler/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` In this section, the current design of Turing's model "compiler" is described which enables Turing to perform various types of Bayesian inference without changing the model definition. The "compiler" is essentially just a macro that rewrites the user's model definition to a function that generates a `Model` struct that Julia's dispatch can operate on and that Julia's compiler can successfully do type inference on for efficient machine code generation. diff --git a/tutorials/docs-06-for-developers-interface/index.qmd b/tutorials/docs-06-for-developers-interface/index.qmd index 29e20d84e..3dbd6fe83 100755 --- a/tutorials/docs-06-for-developers-interface/index.qmd +++ b/tutorials/docs-06-for-developers-interface/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` # The sampling interface diff --git a/tutorials/docs-07-for-developers-variational-inference/index.qmd b/tutorials/docs-07-for-developers-variational-inference/index.qmd index a9a18915a..a9bfc97f9 100755 --- a/tutorials/docs-07-for-developers-variational-inference/index.qmd +++ b/tutorials/docs-07-for-developers-variational-inference/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` # Overview diff --git a/tutorials/docs-09-using-turing-advanced/index.qmd b/tutorials/docs-09-using-turing-advanced/index.qmd index dadcb6c5c..86b3b0989 100755 --- a/tutorials/docs-09-using-turing-advanced/index.qmd +++ b/tutorials/docs-09-using-turing-advanced/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ```{julia} diff --git a/tutorials/docs-10-using-turing-autodiff/index.qmd b/tutorials/docs-10-using-turing-autodiff/index.qmd index 734a89ba0..9a0aaa8d1 100755 --- a/tutorials/docs-10-using-turing-autodiff/index.qmd +++ b/tutorials/docs-10-using-turing-autodiff/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ## Switching AD Modes diff --git a/tutorials/docs-11-using-turing-dynamichmc/index.qmd b/tutorials/docs-11-using-turing-dynamichmc/index.qmd index b16f68c19..6eb0e50e1 100755 --- a/tutorials/docs-11-using-turing-dynamichmc/index.qmd +++ b/tutorials/docs-11-using-turing-dynamichmc/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` Turing supports the use of [DynamicHMC](https://github.com/tpapp/DynamicHMC.jl) as a sampler through the `DynamicNUTS` function. diff --git a/tutorials/docs-12-using-turing-guide/index.qmd b/tutorials/docs-12-using-turing-guide/index.qmd index 2bfaf0dd4..5d0fc2ae9 100755 --- a/tutorials/docs-12-using-turing-guide/index.qmd +++ b/tutorials/docs-12-using-turing-guide/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ## Basics diff --git a/tutorials/docs-13-using-turing-performance-tips/index.qmd b/tutorials/docs-13-using-turing-performance-tips/index.qmd index a79f2f405..8e1b41457 100755 --- a/tutorials/docs-13-using-turing-performance-tips/index.qmd +++ b/tutorials/docs-13-using-turing-performance-tips/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` This section briefly summarises a few common techniques to ensure good performance when using Turing. diff --git a/tutorials/docs-14-using-turing-quick-start/index.qmd b/tutorials/docs-14-using-turing-quick-start/index.qmd index 9434f6a8c..6b3950c20 100755 --- a/tutorials/docs-14-using-turing-quick-start/index.qmd +++ b/tutorials/docs-14-using-turing-quick-start/index.qmd @@ -8,7 +8,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` If you are already well-versed in probabilistic programming and want to take a quick look at how Turing's syntax works or otherwise just want a model to start with, we have provided a complete Bayesian coin-flipping model below. diff --git a/tutorials/docs-15-using-turing-sampler-viz/index.qmd b/tutorials/docs-15-using-turing-sampler-viz/index.qmd index 1bc1b424b..8a273e312 100755 --- a/tutorials/docs-15-using-turing-sampler-viz/index.qmd +++ b/tutorials/docs-15-using-turing-sampler-viz/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ## Introduction diff --git a/tutorials/docs-16-using-turing-external-samplers/index.qmd b/tutorials/docs-16-using-turing-external-samplers/index.qmd index 305a88019..8122b608c 100755 --- a/tutorials/docs-16-using-turing-external-samplers/index.qmd +++ b/tutorials/docs-16-using-turing-external-samplers/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate("."); +Pkg.instantiate(); ``` ## Using External Samplers on Turing Models From 7c864c08f1790c452bbd0aec4961eb99a3de168f Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Thu, 23 May 2024 14:20:12 +0530 Subject: [PATCH 21/25] SDE notebook added --- _quarto.yml | 2 + .../index.qmd | 80 - .../Manifest.toml | 2809 +++++++++++++++++ .../Project.toml | 6 + .../index.qmd | 168 + tutorials/12-gplvm/index.qmd | 2 +- 6 files changed, 2986 insertions(+), 81 deletions(-) create mode 100644 tutorials/10.2-stochastic-differential-equations/Manifest.toml create mode 100644 tutorials/10.2-stochastic-differential-equations/Project.toml create mode 100644 tutorials/10.2-stochastic-differential-equations/index.qmd diff --git a/_quarto.yml b/_quarto.yml index ad3a96f60..2cfb8d38d 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -86,6 +86,8 @@ website: href: tutorials/09-variational-inference/index.qmd - text: "Bayesian Differential Equations" href: tutorials/10-bayesian-differential-equations/index.qmd + - text: "Stochastic Differential Equations" + href: tutorials/10.2-stochastic-differential-equations/index.qmd - text: "Probabilistic PCA" href: tutorials/11-probabilistic-pca/index.qmd - text: "Gaussian Process LVM" diff --git a/tutorials/10-bayesian-differential-equations/index.qmd b/tutorials/10-bayesian-differential-equations/index.qmd index 7aad30e06..d3e6b32fb 100755 --- a/tutorials/10-bayesian-differential-equations/index.qmd +++ b/tutorials/10-bayesian-differential-equations/index.qmd @@ -364,83 +364,3 @@ sample(model_sensealg, NUTS(;adtype=AutoZygote()), 1000; progress=false) ``` For more examples of adjoint usage on large parameter models, consult the [DiffEqFlux documentation](https://diffeqflux.sciml.ai/dev/). - -## Inference of a Stochastic Differential Equation - -A [Stochastic Differential Equation (SDE)](https://diffeq.sciml.ai/stable/tutorials/sde_example/) is a differential equation that has a stochastic (noise) term in the expression of the derivatives. -Here we fit a stochastic version of the Lokta-Volterra system. - -We use a quasi-likelihood approach in which all trajectories of a solution are compared instead of a reduction such as mean, this increases the robustness of fitting and makes the likelihood more identifiable. -We use SOSRI to solve the equation. - -```{julia} -u0 = [1.0, 1.0] -tspan = (0.0, 10.0) -function multiplicative_noise!(du, u, p, t) - x, y = u - du[1] = p[5] * x - return du[2] = p[6] * y -end -p = [1.5, 1.0, 3.0, 1.0, 0.1, 0.1] - -function lotka_volterra!(du, u, p, t) - x, y = u - α, β, γ, δ = p - du[1] = dx = α * x - β * x * y - return du[2] = dy = δ * x * y - γ * y -end - -prob_sde = SDEProblem(lotka_volterra!, multiplicative_noise!, u0, tspan, p) - -ensembleprob = EnsembleProblem(prob_sde) -data = solve(ensembleprob, SOSRI(); saveat=0.1, trajectories=1000) -plot(EnsembleSummary(data)) -``` - -```{julia} -@model function fitlv_sde(data, prob) - # Prior distributions. - σ ~ InverseGamma(2, 3) - α ~ truncated(Normal(1.3, 0.5); lower=0.5, upper=2.5) - β ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) - γ ~ truncated(Normal(3.2, 0.25); lower=2.2, upper=4) - δ ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) - ϕ1 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) - ϕ2 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) - - # Simulate stochastic Lotka-Volterra model. - p = [α, β, γ, δ, ϕ1, ϕ2] - predicted = solve(prob, SOSRI(); p=p, saveat=0.1) - - # Early exit if simulation could not be computed successfully. - if predicted.retcode !== :Success - Turing.@addlogprob! -Inf - return nothing - end - - # Observations. - for i in 1:length(predicted) - data[:, i] ~ MvNormal(predicted[i], σ^2 * I) - end - - return nothing -end; -``` - -The probabilistic nature of the SDE solution makes the likelihood function noisy which poses a challenge for NUTS since the gradient is changing with every calculation. -Therefore we use NUTS with a low target acceptance rate of `0.25` and specify a set of initial parameters. -SGHMC might be a more suitable algorithm to be used here. - -```{julia} -model_sde = fitlv_sde(odedata, prob_sde) - -setadbackend(:forwarddiff) -chain_sde = sample( - model_sde, - NUTS(0.25), - 5000; - initial_params=[1.5, 1.3, 1.2, 2.7, 1.2, 0.12, 0.12], - progress=false, -) -plot(chain_sde) -``` diff --git a/tutorials/10.2-stochastic-differential-equations/Manifest.toml b/tutorials/10.2-stochastic-differential-equations/Manifest.toml new file mode 100644 index 000000000..78e172ab5 --- /dev/null +++ b/tutorials/10.2-stochastic-differential-equations/Manifest.toml @@ -0,0 +1,2809 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.3" +manifest_format = "2.0" +project_hash = "b749a317175ae92be112a716403d625d17fd0339" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.2.0" + +[[deps.AbstractPPL]] +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "Random"] +git-tree-sha1 = "6380a9a03a4207bac53ac310dd3a283bb4df54ef" +uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" +version = "0.8.4" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] +git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.36" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.0.4" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.6.1" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AdvancedMH]] +deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" +uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" +version = "0.8.1" +weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] + + [deps.AdvancedMH.extensions] + AdvancedMHForwardDiffExt = ["DiffResults", "ForwardDiff"] + AdvancedMHMCMCChainsExt = "MCMCChains" + AdvancedMHStructArraysExt = "StructArrays" + +[[deps.AdvancedPS]] +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "5dcd3de7e7346f48739256e71a86d0f96690b8c8" +uuid = "576499cb-2369-40b2-a588-c64705576edc" +version = "0.6.0" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" + +[[deps.AdvancedVI]] +deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] +git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" +version = "0.2.5" + + [deps.AdvancedVI.extensions] + AdvancedVIEnzymeExt = ["Enzyme"] + AdvancedVIFluxExt = ["Flux"] + AdvancedVIReverseDiffExt = ["ReverseDiff"] + AdvancedVIZygoteExt = ["Zygote"] + + [deps.AdvancedVI.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArgCheck]] +git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.3.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" + +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" + +[[deps.Arpack]] +deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] +git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" +uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" +version = "0.5.4" + +[[deps.Arpack_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] +git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +uuid = "68821587-b530-5797-8361-c406ea357684" +version = "3.5.1+1" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.10.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.9.3" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "0.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "30b7ea34abc4fe816eb1a5f434a43da804836163" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.7.0" +weakdeps = ["SparseArrays"] + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + +[[deps.BangBang]] +deps = ["Accessors", "Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "08e5fc6620a8d83534bf6149795054f1b1e8370a" +uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" +version = "0.4.2" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Baselet]] +git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" +uuid = "9718e550-a3fa-408a-8086-8db961cd8217" +version = "0.1.1" + +[[deps.Bijectors]] +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" +uuid = "76274a88-744f-5084-9051-94815aaf08c4" +version = "0.13.12" + + [deps.Bijectors.extensions] + BijectorsDistributionsADExt = "DistributionsAD" + BijectorsForwardDiffExt = "ForwardDiff" + BijectorsLazyArraysExt = "LazyArrays" + BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTrackerExt = "Tracker" + BijectorsZygoteExt = "Zygote" + + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.BitFlags]] +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.8" + +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.5" + +[[deps.BoundaryValueDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"] +git-tree-sha1 = "005b55fa2eebaa4d7bf3cfb8097807f47116175f" +uuid = "764a87c0-6b3e-53db-9096-fe964310641d" +version = "5.7.1" + + [deps.BoundaryValueDiffEq.extensions] + BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" + + [deps.BoundaryValueDiffEq.weakdeps] + ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" + +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.5" + +[[deps.Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.18.0+2" + +[[deps.Calculus]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" +uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" +version = "0.5.1" + +[[deps.ChainRules]] +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "291821c1251486504f6bae435227907d734e94d2" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "1.66.0" + +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.ChangesOfVariables]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +version = "0.1.8" +weakdeps = ["InverseFunctions"] + + [deps.ChangesOfVariables.extensions] + ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.12" + +[[deps.Clustering]] +deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" +uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" +version = "0.15.7" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + +[[deps.ColorSchemes]] +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" +version = "3.25.0" + +[[deps.ColorTypes]] +deps = ["FixedPointNumbers", "Random"] +git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +version = "0.11.5" + +[[deps.ColorVectorSpace]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" +version = "0.10.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.11" + +[[deps.Combinatorics]] +git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" +version = "1.0.2" + +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + +[[deps.CommonSubexpressions]] +deps = ["MacroTools", "Test"] +git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" +version = "0.3.0" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.15.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" + +[[deps.CompilerSupportLibraries_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.1.1+0" + +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.1" + +[[deps.ConsoleProgressMonitor]] +deps = ["Logging", "ProgressMeter"] +git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" +uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" +version = "0.1.2" + +[[deps.ConstructionBase]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.5" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" + +[[deps.Contour]] +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.6.3" + +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" + +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + +[[deps.DataAPI]] +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.16.0" + +[[deps.DataStructures]] +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +version = "0.18.20" + +[[deps.DataValueInterfaces]] +git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" +uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" +version = "1.0.0" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + +[[deps.DelayDiffEq]] +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] +git-tree-sha1 = "5959ae76ebd198f70e9af81153644543da0cfaf2" +uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" +version = "5.47.3" + +[[deps.DelimitedFiles]] +deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" +uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +version = "1.9.1" + +[[deps.DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + +[[deps.DiffEqBase]] +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "03b9555f4c3a7c2f530bb1ae13e85719c632f74e" +uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" +version = "6.151.1" + + [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + + [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.DiffEqCallbacks]] +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" +version = "3.6.2" +weakdeps = ["OrdinaryDiffEq", "Sundials"] + +[[deps.DiffEqNoiseProcess]] +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "65cbbe1450ced323b4b17228ccd96349d96795a7" +uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" +version = "5.21.0" + + [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" + + [deps.DiffEqNoiseProcess.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.DiffResults]] +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" +uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" +version = "1.1.0" + +[[deps.DiffRules]] +deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" +version = "1.15.1" + +[[deps.DifferentialEquations]] +deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] +git-tree-sha1 = "81042254a307980b8ab5b67033aca26c2e157ebb" +uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" +version = "7.13.0" + +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.11" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + +[[deps.Distributed]] +deps = ["Random", "Serialization", "Sockets"] +uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" + +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "22c595ca4146c07b16bcf9c8bea86f731f7109d2" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.108" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + +[[deps.DistributionsAD]] +deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] +git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" +uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" +version = "0.6.55" + + [deps.DistributionsAD.extensions] + DistributionsADForwardDiffExt = "ForwardDiff" + DistributionsADLazyArraysExt = "LazyArrays" + DistributionsADReverseDiffExt = "ReverseDiff" + DistributionsADTrackerExt = "Tracker" + + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Downloads]] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] +uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" +version = "1.6.0" + +[[deps.DualNumbers]] +deps = ["Calculus", "NaNMath", "SpecialFunctions"] +git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" +uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" +version = "0.6.8" + +[[deps.DynamicPPL]] +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] +git-tree-sha1 = "882510df0da64bae763a65240b07fb4b1c462317" +uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" +version = "0.27.1" + + [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" + +[[deps.EllipticalSliceSampling]] +deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" +uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" +version = "2.0.0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EnzymeCore]] +git-tree-sha1 = "18394bc78ac2814ff38fe5e0c9dc2cd171e2810c" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.7.2" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+0" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.10" + +[[deps.Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.6.2+0" + +[[deps.ExponentialUtilities]] +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "8e18940a5ba7f4ddb41fe2b79b6acaac50880a86" +uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" +version = "1.26.1" + +[[deps.ExprTools]] +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.10" + +[[deps.FFMPEG]] +deps = ["FFMPEG_jll"] +git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.4.1" + +[[deps.FFMPEG_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+0" + +[[deps.FastAlmostBandedMatrices]] +deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] +git-tree-sha1 = "9dc913faf8552fd09b92a0d7fcc25f1d5609d795" +uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" +version = "0.1.1" + +[[deps.FastBroadcast]] +deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" +uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" +version = "0.2.8" + +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" + +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.4" + +[[deps.FileWatching]] +uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" + +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.11.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.23.1" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.FixedPointNumbers]] +deps = ["Statistics"] +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" +version = "0.8.5" + +[[deps.Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.96+0" + +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" + +[[deps.ForwardDiff]] +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +uuid = "f6369f11-7733-5829-9624-2563aa707210" +version = "0.10.36" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" + +[[deps.FreeType2_jll]] +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" +uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" +version = "2.13.2+0" + +[[deps.FriBidi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +uuid = "559328eb-81f9-559d-9380-de523a88c83c" +version = "1.0.14+0" + +[[deps.FunctionWrappers]] +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" +uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" + +[[deps.Functors]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" +uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" +version = "0.4.10" + +[[deps.Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + +[[deps.GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.9+0" + +[[deps.GPUArraysCore]] +deps = ["Adapt"] +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +uuid = "46192b85-c4d5-4398-a991-12ede77f4527" +version = "0.1.6" + +[[deps.GR]] +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.73.5" + +[[deps.GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.73.5+0" + +[[deps.GenericSchur]] +deps = ["LinearAlgebra", "Printf"] +git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" +uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" +version = "0.5.4" + +[[deps.Gettext_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.21.0+0" + +[[deps.Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.80.2+0" + +[[deps.Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[deps.Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "4f2b57488ac7ee16124396de4f2bbdd51b2602ad" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.11.0" + +[[deps.Grisu]] +git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" +uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" +version = "1.0.2" + +[[deps.HTTP]] +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "1.10.8" + +[[deps.HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" + +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + +[[deps.HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.23" + +[[deps.IfElse]] +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.1" + +[[deps.Inflate]] +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" +uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" +version = "0.1.4" + +[[deps.InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.1.0+0" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.14" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" + +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + +[[deps.IrrationalConstants]] +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.2.2" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + +[[deps.IteratorInterfaceExtensions]] +git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" +uuid = "82899510-4779-5014-852e-03e436cf321d" +version = "1.0.0" + +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.7" + +[[deps.JLLWrappers]] +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" +version = "1.5.0" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "3.0.3+0" + +[[deps.JumpProcesses]] +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "ed08d89318be7d625613f3c435d1f6678fba4850" +uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" +version = "9.11.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" + +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.6.0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.19" +weakdeps = ["EnzymeCore"] + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + +[[deps.Krylov]] +deps = ["LinearAlgebra", "Printf", "SparseArrays"] +git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" +uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +version = "0.9.6" + +[[deps.LAME_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" +version = "3.100.2+0" + +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "065c36f95709dd4a676dc6839a35d6fa6f192f24" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "7.1.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.7+0" + +[[deps.LRUCache]] +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" +uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] + +[[deps.LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.2+0" + +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + +[[deps.Latexify]] +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" +version = "0.16.3" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.15" + +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.10.0" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" + +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + +[[deps.LevyArea]] +deps = ["LinearAlgebra", "Random", "SpecialFunctions"] +git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" +uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" +version = "1.0.0" + +[[deps.LibCURL]] +deps = ["LibCURL_jll", "MozillaCACerts_jll"] +uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" + +[[deps.LibCURL_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" + +[[deps.LibGit2]] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + +[[deps.LibSSH2_jll]] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" + +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + +[[deps.Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.2+1" + +[[deps.Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.11+0" + +[[deps.Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.6.0+0" + +[[deps.Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.49.0+0" + +[[deps.Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.17.0+0" + +[[deps.Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.40.1+0" + +[[deps.Libtask]] +deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] +git-tree-sha1 = "ed1f362b3fd13f00b65e61d98669c652c17663ab" +uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" +version = "0.8.7" + +[[deps.Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.5.1+1" + +[[deps.Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.40.1+0" + +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] +git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.2.0" + +[[deps.LinearAlgebra]] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] +uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "efd815eaa56c0ffdf86581df5aaefb7e901323a0" +uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" +version = "2.30.0" + + [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + + [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.1" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LogExpFunctions]] +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" +uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" +version = "0.3.27" +weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.LoggingExtras]] +deps = ["Dates", "Logging"] +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" +version = "1.0.3" + +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.170" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.6" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.10" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.1.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "d2a45e1b5998ba3fdfb6cfe0c81096d4c7fb40e7" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.9.6" + +[[deps.MacroTools]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" +version = "0.5.13" + +[[deps.ManualMemory]] +git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" +uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" +version = "0.1.8" + +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.2.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "b1f2f92feb0bc201e91c155ef575bcc7d9cc3526" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.2" + +[[deps.MbedTLS]] +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "1.1.9" + +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" + +[[deps.Measures]] +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.2" + +[[deps.MicroCollections]] +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" +uuid = "128add7d-3638-4c79-886c-908ea0c25c34" +version = "0.2.0" + +[[deps.Missings]] +deps = ["DataAPI"] +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" +uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" +version = "1.2.0" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.MozillaCACerts_jll]] +uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" + +[[deps.MuladdMacro]] +git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" +uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" +version = "0.2.4" + +[[deps.MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "68bf5103e002c44adfd71fea6bd770b3f0586843" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.10.2" + +[[deps.NLSolversBase]] +deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.8.3" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + +[[deps.NNlib]] +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] +git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" +uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" +version = "0.9.17" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.NaNMath]] +deps = ["OpenLibm_jll"] +git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" +version = "1.0.2" + +[[deps.NamedArrays]] +deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "c7aab3836df3f31591a2b4167fcd87b741dacfc9" +uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" +version = "0.10.2" + +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.NearestNeighbors]] +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" +uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" +version = "0.4.16" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "dc0d78eeed89323526203b8a11a4fa6cdbe25cd6" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.11.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.Observables]] +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.5.5" + +[[deps.OffsetArrays]] +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.14.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + +[[deps.Ogg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" +version = "1.3.5+1" + +[[deps.OpenBLAS_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+4" + +[[deps.OpenLibm_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+1" + +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.5+0" + +[[deps.Optim]] +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +uuid = "429524aa-4258-5aef-a3af-852621145aeb" +version = "1.9.4" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + +[[deps.Optimisers]] +deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" +uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" +version = "0.3.3" + +[[deps.Opus_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +uuid = "91d4177d-7536-5919-b921-800302f37372" +version = "1.3.2+0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.3" + +[[deps.OrdinaryDiffEq]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "b2cd04c49e8c7c6f705b527898fc843c3aa90605" +uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +version = "6.78.0" + +[[deps.PCRE2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" +version = "10.42.0+1" + +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + +[[deps.Parameters]] +deps = ["OrderedCollections", "UnPack"] +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" +uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" +version = "0.12.3" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.8.1" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" + +[[deps.Pixman_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.43.4+0" + +[[deps.Pkg]] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" + +[[deps.PlotThemes]] +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "3.1.0" + +[[deps.PlotUtils]] +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "1.4.1" + +[[deps.Plots]] +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "1.40.4" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.PoissonRandom]] +deps = ["Random"] +git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" +uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" +version = "0.4.4" + +[[deps.Polyester]] +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" +uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" +version = "0.7.14" + +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.2.1" + +[[deps.PositiveFactorizations]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" +uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" +version = "0.2.4" + +[[deps.PreallocationTools]] +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "a660e9daab5db07adf3dedfe09b435cc530d855e" +uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" +version = "0.4.21" + + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.3" + +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.3.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.ProgressLogging]] +deps = ["Logging", "SHA", "UUIDs"] +git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" +version = "0.1.4" + +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.0" + +[[deps.PtrArrays]] +git-tree-sha1 = "f011fbb92c4d401059b2212c05c0601b70f8b759" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.2.0" + +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.5.3+1" + +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.9.4" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.Random123]] +deps = ["Random", "RandomNumbers"] +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +uuid = "74087812-796a-5b5d-8853-05524746bad3" +version = "1.7.0" + +[[deps.RandomNumbers]] +deps = ["Random", "Requires"] +git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" +version = "1.5.3" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + +[[deps.RealDot]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" +uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" +version = "0.1.0" + +[[deps.RecipesBase]] +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" +version = "1.3.4" + +[[deps.RecipesPipeline]] +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" +uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" +version = "0.6.12" + +[[deps.RecursiveArrayTools]] +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" +uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" +version = "3.19.0" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.23" + +[[deps.Reexport]] +git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" +uuid = "189a3867-3050-52da-a836-e630ba90ab69" +version = "1.2.2" + +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + +[[deps.Requires]] +deps = ["UUIDs"] +git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +uuid = "ae029012-a4dd-5104-9daa-d747884805df" +version = "1.3.0" + +[[deps.ResettableStacks]] +deps = ["StaticArrays"] +git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" +version = "1.1.1" + +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.7.1" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.4.2+0" + +[[deps.Roots]] +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "1ab580704784260ee5f45bffac810b152922747b" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "2.1.5" + + [deps.Roots.extensions] + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + + [deps.Roots.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + +[[deps.RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.13" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + +[[deps.SSMProblems]] +deps = ["AbstractMCMC"] +git-tree-sha1 = "f640e4e8343c9d5f470e2f6ca6ce79f708ab6376" +uuid = "26aad666-b158-4e64-9d35-0e672562fa48" +version = "0.1.1" + +[[deps.SciMLBase]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" +uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" +version = "2.38.0" + + [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SciMLOperators]] +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.8" + +[[deps.SciMLStructures]] +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.2.0" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" + +[[deps.Scratch]] +deps = ["Dates"] +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.2.1" + +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.3" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "1.1.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + +[[deps.Showoff]] +deps = ["Dates", "Grisu"] +git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "1.0.3" + +[[deps.SimpleBufferStream]] +git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" +version = "1.1.0" + +[[deps.SimpleNonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c020028bb22a2f23cbd88cb92cf47cbb8c98513f" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "1.8.0" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" + SimpleNonlinearSolveStaticArraysExt = "StaticArrays" + SimpleNonlinearSolveTrackerExt = "Tracker" + SimpleNonlinearSolveZygoteExt = "Zygote" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.SortingAlgorithms]] +deps = ["DataStructures"] +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" +version = "1.2.1" + +[[deps.SparseArrays]] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] +uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" + +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.18.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.4.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + +[[deps.SplittablesBase]] +deps = ["Setfield", "Test"] +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" +uuid = "171d559e-b47b-412a-8079-5efa626c420e" +version = "0.1.15" + +[[deps.Static]] +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.5.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.4" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.2" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.2.0" + +[[deps.Statistics]] +deps = ["LinearAlgebra", "SparseArrays"] +uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" + +[[deps.StatsAPI]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" +version = "1.7.0" + +[[deps.StatsBase]] +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" +version = "0.34.3" + +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.1" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + +[[deps.StatsPlots]] +deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.15.7" + +[[deps.SteadyStateDiffEq]] +deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"] +git-tree-sha1 = "1158cfdf0da5b0eacdfcfba7c16b174a37bdf6c7" +uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" +version = "2.2.0" + +[[deps.StochasticDiffEq]] +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "97e5d0b7e5ec2e68eec6626af97c59e9f6b6c3d0" +uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" +version = "6.65.1" + +[[deps.StrideArraysCore]] +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" +uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" +version = "0.5.6" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.Sundials]] +deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] +git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997" +uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" +version = "4.24.0" + +[[deps.Sundials_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] +git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" +uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" +version = "5.2.2+0" + +[[deps.SymbolicIndexingInterface]] +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.21" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.TableOperations]] +deps = ["SentinelArrays", "Tables", "Test"] +git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" +uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" +version = "1.2.0" + +[[deps.TableTraits]] +deps = ["IteratorInterfaceExtensions"] +git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" +uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" +version = "1.0.1" + +[[deps.Tables]] +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +version = "1.11.1" + +[[deps.Tar]] +deps = ["ArgTools", "SHA"] +uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" + +[[deps.TensorCore]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" +uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" +version = "0.1.1" + +[[deps.TerminalLoggers]] +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" +uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" +version = "0.1.7" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.2" + +[[deps.TimerOutputs]] +deps = ["ExprTools", "Printf"] +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" +uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" +version = "0.5.24" + +[[deps.Tracker]] +deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +version = "0.2.34" +weakdeps = ["PDMats"] + + [deps.Tracker.extensions] + TrackerPDMatsExt = "PDMats" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.8" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + +[[deps.Transducers]] +deps = ["Accessors", "Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "5215a069867476fc8e3469602006b9670e68da23" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.82" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" + +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.2.0" + +[[deps.Tricks]] +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.8" + +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + +[[deps.Turing]] +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "cfb3b446a5e52e1da4cc71b77a9350c309c581f0" +uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" +version = "0.32.0" + + [deps.Turing.extensions] + TuringDynamicHMCExt = "DynamicHMC" + TuringOptimExt = "Optim" + + [deps.Turing.weakdeps] + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" + +[[deps.URIs]] +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" +version = "1.5.1" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.UnPack]] +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" +uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" +version = "1.0.2" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" + +[[deps.UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.20.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.3" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" + +[[deps.UnsafeAtomicsLLVM]] +deps = ["LLVM", "UnsafeAtomics"] +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" +uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" +version = "0.1.4" + +[[deps.Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "6129a4faf6242e7c3581116fbe3270f3ab17c90d" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.67" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" + +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + +[[deps.Wayland_jll]] +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.21.0+1" + +[[deps.Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.31.0+0" + +[[deps.Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.6" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + +[[deps.XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.12.7+0" + +[[deps.XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.34+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.4.6+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" + +[[deps.Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.8.6+0" + +[[deps.Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.11+0" + +[[deps.Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[deps.Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.4+0" + +[[deps.Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.6+0" + +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[deps.Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[deps.Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[deps.Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[deps.Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.11+0" + +[[deps.Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.1+0" + +[[deps.Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.15.0+0" + +[[deps.Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.2+0" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" + +[[deps.Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[deps.Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[deps.Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[deps.Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.6+0" + +[[deps.Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.39.0+0" + +[[deps.Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.5.0+0" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.6+0" + +[[deps.ZygoteRules]] +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +uuid = "700de1a5-db45-46bc-99cf-38207098b444" +version = "0.2.5" + +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.43.0+0" + +[[deps.gperf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+0" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.9.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" + +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.43+1" + +[[deps.libvorbis_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" +version = "1.3.7+1" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" + +[[deps.x264_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" +version = "2021.5.5+0" + +[[deps.x265_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" +version = "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "1.4.1+1" diff --git a/tutorials/10.2-stochastic-differential-equations/Project.toml b/tutorials/10.2-stochastic-differential-equations/Project.toml new file mode 100644 index 000000000..9745c3084 --- /dev/null +++ b/tutorials/10.2-stochastic-differential-equations/Project.toml @@ -0,0 +1,6 @@ +[deps] +DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" +Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" diff --git a/tutorials/10.2-stochastic-differential-equations/index.qmd b/tutorials/10.2-stochastic-differential-equations/index.qmd new file mode 100644 index 000000000..6166ec270 --- /dev/null +++ b/tutorials/10.2-stochastic-differential-equations/index.qmd @@ -0,0 +1,168 @@ +--- +title: Bayesian Estimation of Differential Equations +engine: julia +--- + +```{julia} +#| echo: false +#| output: false +using Pkg; +Pkg.instantiate(); +``` + +::: {.callout-note collapse="true"} + +## This Part is from [Bayesian Differential Equations Notebook](../10-bayesian-differential-equations/) + +```{julia} +using Turing +using DifferentialEquations + +# Load StatsPlots for visualizations and diagnostics. +using StatsPlots + +using LinearAlgebra + +# Set a seed for reproducibility. +using Random +Random.seed!(14); +``` + +## The Lotka-Volterra Model + +The Lotka–Volterra equations, also known as the predator–prey equations, are a pair of first-order nonlinear differential equations. +These differential equations are frequently used to describe the dynamics of biological systems in which two species interact, one as a predator and the other as prey. +The populations change through time according to the pair of equations + +$$ +\begin{aligned} +\frac{\mathrm{d}x}{\mathrm{d}t} &= (\alpha - \beta y(t))x(t), \\ +\frac{\mathrm{d}y}{\mathrm{d}t} &= (\delta x(t) - \gamma)y(t) +\end{aligned} +$$ + +where $x(t)$ and $y(t)$ denote the populations of prey and predator at time $t$, respectively, and $\alpha, \beta, \gamma, \delta$ are positive parameters. + +We implement the Lotka-Volterra model and simulate it with parameters $\alpha = 1.5$, $\beta = 1$, $\gamma = 3$, and $\delta = 1$ and initial conditions $x(0) = y(0) = 1$. + +```{julia} +# Define Lotka-Volterra model. +function lotka_volterra(du, u, p, t) + # Model parameters. + α, β, γ, δ = p + # Current state. + x, y = u + + # Evaluate differential equations. + du[1] = (α - β * y) * x # prey + du[2] = (δ * x - γ) * y # predator + + return nothing +end + +# Define initial-value problem. +u0 = [1.0, 1.0] +p = [1.5, 1.0, 3.0, 1.0] +tspan = (0.0, 10.0) +prob = ODEProblem(lotka_volterra, u0, tspan, p) + +# Plot simulation. +plot(solve(prob, Tsit5())) +``` + +We generate noisy observations to use for the parameter estimation tasks in this tutorial. +With the [`saveat` argument](https://docs.sciml.ai/latest/basics/common_solver_opts/) we specify that the solution is stored only at `0.1` time units. +To make the example more realistic we add random normally distributed noise to the simulation. + +```{julia} +sol = solve(prob, Tsit5(); saveat=0.1) +odedata = Array(sol) + 0.8 * randn(size(Array(sol))) + +# Plot simulation and noisy observations. +plot(sol; alpha=0.3) +scatter!(sol.t, odedata'; color=[1 2], label="") +``` + +Alternatively, we can use real-world data from Hudson’s Bay Company records (an Stan implementation with slightly different priors can be found here: https://mc-stan.org/users/documentation/case-studies/lotka-volterra-predator-prey.html). + +::: + +## Inference of a Stochastic Differential Equation + +A [Stochastic Differential Equation (SDE)](https://diffeq.sciml.ai/stable/tutorials/sde_example/) is a differential equation that has a stochastic (noise) term in the expression of the derivatives. +Here we fit a stochastic version of the Lokta-Volterra system. + +We use a quasi-likelihood approach in which all trajectories of a solution are compared instead of a reduction such as mean, this increases the robustness of fitting and makes the likelihood more identifiable. +We use SOSRI to solve the equation. + +```{julia} +u0 = [1.0, 1.0] +tspan = (0.0, 10.0) +function multiplicative_noise!(du, u, p, t) + x, y = u + du[1] = p[5] * x + return du[2] = p[6] * y +end +p = [1.5, 1.0, 3.0, 1.0, 0.1, 0.1] + +function lotka_volterra!(du, u, p, t) + x, y = u + α, β, γ, δ = p + du[1] = dx = α * x - β * x * y + return du[2] = dy = δ * x * y - γ * y +end + +prob_sde = SDEProblem(lotka_volterra!, multiplicative_noise!, u0, tspan, p) + +ensembleprob = EnsembleProblem(prob_sde) +data = solve(ensembleprob, SOSRI(); saveat=0.1, trajectories=1000) +plot(EnsembleSummary(data)) +``` + +```{julia} +@model function fitlv_sde(data, prob) + # Prior distributions. + σ ~ InverseGamma(2, 3) + α ~ truncated(Normal(1.3, 0.5); lower=0.5, upper=2.5) + β ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) + γ ~ truncated(Normal(3.2, 0.25); lower=2.2, upper=4) + δ ~ truncated(Normal(1.2, 0.25); lower=0.5, upper=2) + ϕ1 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) + ϕ2 ~ truncated(Normal(0.12, 0.3); lower=0.05, upper=0.25) + + # Simulate stochastic Lotka-Volterra model. + p = [α, β, γ, δ, ϕ1, ϕ2] + predicted = solve(prob, SOSRI(); p=p, saveat=0.1) + + # Early exit if simulation could not be computed successfully. + if predicted.retcode !== :Success + Turing.@addlogprob! -Inf + return nothing + end + + # Observations. + for i in 1:length(predicted) + data[:, i] ~ MvNormal(predicted[i], σ^2 * I) + end + + return nothing +end; +``` + +The probabilistic nature of the SDE solution makes the likelihood function noisy which poses a challenge for NUTS since the gradient is changing with every calculation. +Therefore we use NUTS with a low target acceptance rate of `0.25` and specify a set of initial parameters. +SGHMC might be a more suitable algorithm to be used here. + +```{julia} +model_sde = fitlv_sde(odedata, prob_sde) + +setadbackend(:forwarddiff) +chain_sde = sample( + model_sde, + NUTS(0.25), + 5000; + initial_params=[1.5, 1.3, 1.2, 2.7, 1.2, 0.12, 0.12], + progress=false, +) +plot(chain_sde) +``` diff --git a/tutorials/12-gplvm/index.qmd b/tutorials/12-gplvm/index.qmd index 098bb071c..9ad1a7d02 100755 --- a/tutorials/12-gplvm/index.qmd +++ b/tutorials/12-gplvm/index.qmd @@ -7,7 +7,7 @@ engine: julia #| echo: false #| output: false using Pkg; -Pkg.instantiate(); +Pkg.instantiate("."); ``` In a previous tutorial, we have discussed latent variable models, in particular probabilistic principal component analysis (pPCA). From 8f45c706fb96e50ad99d793cf8316573a90d70ca Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Thu, 23 May 2024 14:22:06 +0530 Subject: [PATCH 22/25] fixed minor issue in tutorial-11 --- tutorials/11-probabilistic-pca/index.qmd | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd index 4175ff1e4..9abf68795 100755 --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -103,9 +103,8 @@ All packages used in this tutorial are listed here. You can install them via `using Pkg; Pkg.add("package_name")`. Package usages: -::: {.callout-tip} -## hello +::: {.callout-caution} We use `DataFrames` for instantiating matrices, `LinearAlgebra` and `FillArrays` to perform matrix operations; `Turing` for model specification and MCMC sampling, `ReverseDiff` for setting the automatic differentiation backend when sampling. `StatsPlots` for visualising the resutls. `, Measures` for setting plot margin units. From 97e561697440eb7aec3f7bde4f2745aef6b4900c Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Thu, 23 May 2024 18:23:22 +0530 Subject: [PATCH 23/25] updating workflow --- .github/workflows/publish.yml | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 4945a2678..73203658d 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -3,7 +3,7 @@ on: branches: - master -name: Deploy to GitHub Pages +name: Render Docs Website jobs: build-and-deploy: @@ -22,6 +22,7 @@ jobs: uses: quarto-dev/quarto-actions/setup@v2 with: version: pre-release + - name: Restore cached _freeze folder id: cache-primes-restore uses: actions/cache/restore@v4 @@ -33,6 +34,11 @@ jobs: - name: Render Quarto site run: quarto render + - name: Clear existing cache + run: | + sudo rm -rf ${{ runner.tool_cache }}/linux-primes + shell: bash + - name: Save _freeze folder id: cache-primes-save uses: actions/cache/save@v4 From 75055cdecb2f029b5b731302d7c7321c6accaa09 Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Thu, 23 May 2024 18:24:03 +0530 Subject: [PATCH 24/25] tutorial 11 --- tutorials/11-probabilistic-pca/index.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tutorials/11-probabilistic-pca/index.qmd b/tutorials/11-probabilistic-pca/index.qmd index 9abf68795..d46541271 100755 --- a/tutorials/11-probabilistic-pca/index.qmd +++ b/tutorials/11-probabilistic-pca/index.qmd @@ -102,9 +102,9 @@ Random.seed!(1789); All packages used in this tutorial are listed here. You can install them via `using Pkg; Pkg.add("package_name")`. -Package usages: ::: {.callout-caution} +## Package usages: We use `DataFrames` for instantiating matrices, `LinearAlgebra` and `FillArrays` to perform matrix operations; `Turing` for model specification and MCMC sampling, `ReverseDiff` for setting the automatic differentiation backend when sampling. `StatsPlots` for visualising the resutls. `, Measures` for setting plot margin units. From 1b003525ac235b3095e3ca72a0b0f1acf21ae26f Mon Sep 17 00:00:00 2001 From: Shravan Goswami Date: Thu, 23 May 2024 18:24:43 +0530 Subject: [PATCH 25/25] added 404.qmd and updated _quarto.yml --- 404.qmd | 7 +++++++ _quarto.yml | 12 ++++++++---- 2 files changed, 15 insertions(+), 4 deletions(-) create mode 100755 404.qmd diff --git a/404.qmd b/404.qmd new file mode 100755 index 000000000..7514919de --- /dev/null +++ b/404.qmd @@ -0,0 +1,7 @@ +--- +title: Page Not Found +--- + +The page you requested cannot be found (perhaps it was moved or renamed). + +You may want to visit [Get-Started Guide]({{< meta get-started >}}) or [Tutorials]({{< meta tutorials-intro >}}). diff --git a/_quarto.yml b/_quarto.yml index ad3a96f60..f22395d70 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -15,13 +15,16 @@ website: type: overlay navbar: logo: "assets/images/turing-logo.svg" + logo-href: https://turinglang.org/ background: "#073c44" foreground: "#ffffff" left: - - href: docs/using-turing/getting-started/ + - href: tutorials/docs-00-getting-started/ text: Get Started - - href: docs/tutorials/00-introduction/ + - href: tutorials/00-introduction/ text: Tutorials + - href: https://turinglang.org/news/ + text: Library API - href: https://turinglang.org/news/ text: News - href: https://turinglang.org/team/ @@ -118,6 +121,7 @@ website: back-to-top-navigation: true repo-url: https://github.com/TuringLang/TuringTutorials repo-actions: [edit, issue] + repo-branch: master repo-link-target: _blank page-navigation: true @@ -139,5 +143,5 @@ execute: # Global Variables to use in any qmd files using: # {{< meta site-url >}} site-url: https://turinglang.org/docs/ -get-started: docs/using-turing/getting-started/ -tutorials-intro: docs/tutorials/00-introduction/ \ No newline at end of file +get-started: tutorials/docs-00-getting-started/ +tutorials-intro: tutorials/00-introduction/ \ No newline at end of file