UniTO HPC4AI migration (#503)

* Added HPC4AI logo
* Updated docker-compose.yml file
* Removed the Data Controller section

Author: GlassOfWhiskey

docker-compose.yml

@@ -1,4 +1,7 @@
-version: '3.2'
+version: '3.9'
+networks:
+  postgres:
+  sparql:
 volumes:
   bundle:
   git:
@@ -14,7 +17,7 @@ services:
     #build: .
     ports:
      - "8080:8080"
-    links:
+    networks:
      - postgres
      - sparql
     volumes:
@@ -38,6 +41,8 @@ services:
   postgres:
     restart: always
     image: postgres:14-alpine
+    networks:
+     - postgres
     command: postgres -c listen_addresses='*' -c log_statement=all
     environment:
       - POSTGRES_USER=sa
@@ -48,7 +53,9 @@ services:
       - type: volume
         source: postgres
         target: /var/lib/postgresql/data
-      - ./pg_hba.conf/:/var/lib/postgresql/data/pg_hba.conf
+      - type: bind
+        source: ./pg_hba.conf
+        target: /var/lib/postgresql/data/pg_hba.conf
   sparql:
     restart: always
 ## For debugging, expose the Fuseki port by enabling:
@@ -57,8 +64,17 @@ services:
 ## To find the admin password, try:
 ##   docker-compose exec sparql grep admin /fuseki/shiro.ini
     image: stain/jena-fuseki:3.4.0
+    networks:
+      - sparql
     volumes:
-    - type: volume
-      source: sparql
-      target: /fuseki/databases/cwlviewer
-    command: "/jena-fuseki/fuseki-server --loc=/fuseki/databases/cwlviewer /cwlviewer"
+      - type: volume
+        source: sparql
+        target: /fuseki
+      - type: bind
+        source: ./start-jena.sh
+        target: /start-jena.sh
+    ulimits:
+      nofile:
+        soft: 65536
+        hard: 65536
+    command: "/start-jena.sh"

src/main/resources/static/img/hpc4ai-logo.webp

@@ -130,27 +130,6 @@ <h2>Where is information exposed?</h2>
             including author names and workflow title. 
             </p>
             </section>
-             
-            <section id="data-controller">
-            <h2>Data controller</h2>            
-            <p>            
-            The <em>Data Controller</em> for the
-            <a href="https://view.commonwl.org/">https://view.commonwl.org/</a> instance of CWL Viewer 
-            is Curii Corporation, Inc., contact
-            <a href="javascript:window.location.href=atob('bWFpbHRvOmluZm9AY3VyaWkuY29t')">
-            <code><span class="obf-hide" aria-hidden="true">NOT</span>info<span class="obf-at"></span><span class="obf-hide" aria-hidden="true">()</span><span class="obf-hide" aria-hidden="true">NONE</span>curii.com</code></a> for any enquiries.
-            If this viewer is accessed at a different URL, the data controller is likely someone else.
-            </p>
-            <p>            
-            <span class="obf-hide" aria-hidden="true">(manual de-obfuscation needed above)</span>
-            You may contact the Data Controller to request access to data about yourself, 
-            or to request update or removal of your personally identifiable information.
-            You may also want to follow the <em>Shown Workflow</em> link at the bottom 
-            of any workflow page to locate the corresponding git repository from 
-            the original publisher.
-            </p>
-            </section> 
-            
 		</section>                
 
 

src/main/resources/templates/about.html

@@ -51,6 +51,8 @@
               alt="BioExcel" title="BioExcel Center of Excellence for Computational Biomolecular Research" /></a>
             <a href="https://cordis.europa.eu/projects/675728" rel="noopener" target="_blank"><img src="/img/Flag_of_Europe.svg"
               alt="EU" title="European Commision grant 675728" /></a>
+            <a href="https://hpc4ai.unito.it/" rel="noopener" target="_blank"><img src="/img/hpc4ai-logo.webp"
+              alt="HPC4AI" title="HPC4AI competence centre, University of Turin" /></a>
           </div>
         </div>
     </div>

src/main/resources/templates/fragments/footer.html

@@ -0,0 +1,4 @@
+#!/bin/sh
+
+mkdir -p /fuseki/databases/cwlviewer
+/jena-fuseki/fuseki-server --loc=/fuseki/databases/cwlviewer /cwlviewer