Version 0.6.0 (#118)

* update

* update

* update makefile

* update

---------

Co-authored-by: Nathanael Perraudin <nathanael.perraudin@synthesia.io>

Author: nperraud

CHANGELOG.rst

@@ -6,9 +6,13 @@ All notable changes to this project will be documented in this file.
 The format is based on `Keep a Changelog <https://keepachangelog.com>`_
 and this project adheres to `Semantic Versioning <https://semver.org>`_.
 
-Unreleased
-----------
+0.6.0 (2025-09-11)
+------------------
 
+* Update to the new python versions 3.8, 3.9, 3.10, 3.11, 3.12, 3.13.
+* Move CI from travis to GitHub Actions.
+* Upgrade test from unittest to pytest.
+* Add a basic pre-commit hooks.
 * Upgrade from PyQt5 to PyQt6.
 * ``print(graph)`` and ``print(filters)`` now show valuable information.
 * Building a graph object is much faster.
@@ -25,7 +29,6 @@ Unreleased
 * ``g.inverse()`` returns the pseudo-inverse of the filter bank.
 * ``g.complement()`` returns the filter that makes the frame tight.
 * Wave filter bank which application simulates the propagation of a wave.
-* Continuous integration with Python 3.7, 3.8, 3.9. Dropped 2.7, 3.4, 3.5, 3.6.
 * New implementation of the Sensor graph that is simpler and scales better.
 * A new learning module with three functions to solve standard semi-supervised
   classification and regression problems.

CONTRIBUTING.rst

@@ -14,12 +14,13 @@ The package can be set up (ideally in a fresh virtual environment) for local
 development with the following::
 
     $ git clone https://github.com/epfl-lts2/pygsp.git
-    $ pip install --upgrade --editable pygsp[dev]
+    $ cd pygsp
+    $ make install
 
-The ``dev`` "extras requirement" ensures that dependencies required for
-development (to run the test suite and build the documentation) are installed.
-Only `graph-tool <https://graph-tool.skewed.de>`_ will be missing: install it
-manually as it cannot be installed by pip.
+The ``make install`` command (which runs ``uv sync --all-extras``) ensures that
+all dependencies required for development (to run the test suite and build the
+documentation) are installed. Only `graph-tool <https://graph-tool.skewed.de>`_
+will be missing: install it manually as it cannot be installed by uv.
 
 You can improve or add functionality in the ``pygsp`` folder, along with
 corresponding unit tests in ``pygsp/tests/test_*.py`` (with reasonable
@@ -63,7 +64,7 @@ Making a release
    binary wheel should be found as ``dist/PyGSP-0.5.0-py2.py3-none-any.whl``.
 #. Test the upload and installation process::
 
-    $ twine upload --repository-url https://test.pypi.org/legacy/ dist/*
+    $ uv publish --publish-url https://test.pypi.org/legacy/ dist/*
     $ pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple pygsp
 
    Log in as the LTS2 user.

Makefile

@@ -1,8 +1,9 @@
 NB = $(sort $(wildcard examples/*.ipynb))
-.PHONY: help clean lint test doc dist release
+.PHONY: help clean install lint test doc dist release
 
 help:
 	@echo "clean    remove non-source files and clean source files"
+	@echo "install  install package in development mode with all dependencies"
 	@echo "lint     check style"
 	@echo "test     run tests and check coverage"
 	@echo "doc      generate HTML documentation and check links"
@@ -13,9 +14,12 @@ clean:
 	git clean -Xdf
 	jupyter nbconvert --inplace --ClearOutputPreprocessor.enabled=True $(NB)
 
+install:
+	uv sync --all-extras
+
 
 lint:
-	flake8 --doctests --exclude=doc,.venv,build --max-line-length=88 --extend-ignore=E203
+	uv run flake8 --doctests --exclude=doc,.venv,build --max-line-length=88 --extend-ignore=E203
 
 # Matplotlib doesn't print to screen. Also faster.
 export MPLBACKEND = agg
@@ -24,20 +28,19 @@ export DISPLAY = :99
 
 test:
 	Xvfb $$DISPLAY -screen 0 800x600x24 &
-	coverage run --branch --source pygsp -m pytest
-	coverage report
-	coverage html
+	uv run coverage run --branch --source pygsp -m pytest
+	uv run coverage report
+	uv run coverage html
 	killall Xvfb
 
 doc:
-	sphinx-build -b html -d doc/_build/doctrees doc doc/_build/html
-	sphinx-build -b linkcheck -d doc/_build/doctrees doc doc/_build/linkcheck
+	uv run sphinx-build -b html -d doc/_build/doctrees doc doc/_build/html
+	uv run sphinx-build -b linkcheck -d doc/_build/doctrees doc doc/_build/linkcheck
 
 dist: clean
-	python setup.py sdist
-	python setup.py bdist_wheel --universal
+	uv build
 	ls -lh dist/*
-	twine check dist/*
+	uv run twine check dist/*
 
 release: dist
-	twine upload dist/*
+	uv publish

README.rst

@@ -15,7 +15,7 @@ A (mostly unmaintained) `Matlab version <https://epfl-lts2.github.io/gspbox-html
 +-----------------------------------+
 | |zenodo|  |license|  |pyversions| |
 +-----------------------------------+
-| |ci|  |coveralls|  |github|   |
+| |ci|  |coveralls|  |github|       |
 +-----------------------------------+
 
 .. |doc| image:: https://readthedocs.org/projects/pygsp/badge/?version=latest

pygsp/__init__.py

@@ -37,17 +37,5 @@
     graphs.Graph.plot.__func__.__doc__ = plotting._plot_graph.__doc__
     graphs.Graph.plot_spectrogram.__func__.__doc__ = plotting._plot_spectrogram.__doc__
 
-__version__ = "0.5.1"
-__release_date__ = "2017-12-15"
-
-
-def test():  # pragma: no cover
-    """Run the test suite."""
-    import subprocess
-    import sys
-
-    # Run pytest on the tests directory
-    result = subprocess.run(
-        [sys.executable, "-m", "pytest", "pygsp/tests/", "-v"], capture_output=False
-    )
-    return result.returncode == 0
+__version__ = "0.6.0"
+__release_date__ = "2025-09-11"

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "PyGSP"
-version = "0.5.1"
+version = "0.6.0"
 description = "Graph Signal Processing in Python"
 readme = "README.rst"
 requires-python = ">=3.8"
@@ -72,6 +72,7 @@ dev = [
     "sphinx-rtd-theme",
     "sphinx-copybutton",
     # Build and upload packages
+    "build",
     "wheel",
     "twine",
     "pre-commit",
@@ -140,3 +141,8 @@ exclude_lines = [
 [tool.flake8]
 max-line-length = 88
 extend-ignore = ["E203", "W503"]
+
+[dependency-groups]
+dev = [
+    "pre-commit>=3.5.0",
+]