Merge pull request #1522 from jbv2/jbv2-PE_only_v3

jbv2 · web-flow · commit 37ae9ddd6e01 · 2025-03-14T11:31:53.000+01:00
Adding PE only v3
diff --git a/testdata/Mammoth/samplesheet_PE_only_v3.tsv b/testdata/Mammoth/samplesheet_PE_only_v3.tsv
@@ -0,0 +1,2 @@
+sample_id	library_id	lane	colour_chemistry	pairment	strandedness	damage_treatment	r1	r2	bam	bam_reference_id
+JK2782	JK2782_TGGCCGATCAACGA	1	4	paired	double	none	https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R1_001.fastq.gz.tengrand.fq.gz	https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R2_001.fastq.gz.tengrand.fq.gz		

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+sample_id library_id lane colour_chemistry pairment strandedness damage_treatment r1 r2 bam bam_reference_id`
	`2`	`+JK2782 JK2782_TGGCCGATCAACGA 1 4 paired double none https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R1_001.fastq.gz.tengrand.fq.gz https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L008_R2_001.fastq.gz.tengrand.fq.gz`