configure circle wf

Author: rciric

.circleci/ds005_outputs.txt

@@ -43,10 +43,9 @@ fmriprep/sub-01/func
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_AROMAnoiseICs.csv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_bold.dtseries.nii
-fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-acompcor_decomposition.json
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_regressors.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-confounds_regressors.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-MELODIC_mixing.tsv
-fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_desc-tcompcor_decomposition.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-fsaverage5_hemi-L.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-fsaverage5_hemi-R.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-fsnative_hemi-L.func.gii
@@ -69,10 +68,9 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-01_space-T1w_desc-preproc_
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_AROMAnoiseICs.csv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_bold.dtseries.nii
-fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-acompcor_decomposition.json
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_regressors.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-confounds_regressors.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-MELODIC_mixing.tsv
-fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_desc-tcompcor_decomposition.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsaverage5_hemi-L.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsaverage5_hemi-R.func.gii
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-02_space-fsnative_hemi-L.func.gii

.circleci/ds054_outputs.txt

@@ -27,9 +27,8 @@ fmriprep/sub-100185/anat/sub-100185_space-MNI152NLin2009cAsym_label-CSF_probseg.
 fmriprep/sub-100185/anat/sub-100185_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
 fmriprep/sub-100185/anat/sub-100185_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
 fmriprep/sub-100185/func
-fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_desc-acompcor_decomposition.json
+fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_desc-confounds_regressors.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_desc-confounds_regressors.tsv
-fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_desc-tcompcor_decomposition.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
@@ -40,9 +39,8 @@ fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-brain_mask.nii.gz
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-01_space-T1w_desc-preproc_bold.nii.gz
-fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_desc-acompcor_decomposition.json
+fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_desc-confounds_regressors.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_desc-confounds_regressors.tsv
-fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_desc-tcompcor_decomposition.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.json
 fmriprep/sub-100185/func/sub-100185_task-machinegame_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz

.circleci/ds210_outputs.txt

@@ -27,9 +27,8 @@ fmriprep/sub-02/anat/sub-02_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
 fmriprep/sub-02/anat/sub-02_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
 fmriprep/sub-02/anat/sub-02_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
 fmriprep/sub-02/func
-fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_desc-acompcor_decomposition.json
+fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_desc-confounds_regressors.json
 fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_desc-confounds_regressors.tsv
-fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_desc-tcompcor_decomposition.json
 fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
 fmriprep/sub-02/func/sub-02_task-cuedSGT_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz

fmriprep/__about__.py

@@ -106,6 +106,8 @@
 LINKS_REQUIRES = [
     'git+https://github.com/poldracklab/smriprep.git@'
     '423bcc43ab7300177eb3b98da62817b2cad8eb87#egg=smriprep-0.1.0',
+    'git+https://github.com/rciric/nipype.git@'
+    '329c74d63a1e1fb963d8e01035e36617acfaaec9#egg=nipype',
 ]
 
 TESTS_REQUIRES = [

requirements.txt

@@ -1,3 +1,4 @@
 niworkflows<0.9.0a0,>=0.8.1
 git+https://github.com/poldracklab/smriprep.git@423bcc43ab7300177eb3b98da62817b2cad8eb87#egg=smriprep-0.1.0
+git+https://github.com/rciric/nipype.git@329c74d63a1e1fb963d8e01035e36617acfaaec9#egg=nipype
 templateflow<0.2.0a0,>=0.1.3