@@ -45,14 +45,14 @@ Note the ``-i`` flag allows you to specify an image.
4545When invoking ``docker `` directly, the mount options must be specified
4646with the ``-v `` flag::
4747
48- -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.6 /site-packages/fmriprep:ro
49- -v $HOME/projects/niworkflows/niworkflows:/usr/local/miniconda/lib/python3.6 /site-packages/niworkflows:ro
50- -v $HOME/projects/nipype/nipype:/usr/local/miniconda/lib/python3.6 /site-packages/nipype:ro
48+ -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.7 /site-packages/fmriprep:ro
49+ -v $HOME/projects/niworkflows/niworkflows:/usr/local/miniconda/lib/python3.7 /site-packages/niworkflows:ro
50+ -v $HOME/projects/nipype/nipype:/usr/local/miniconda/lib/python3.7 /site-packages/nipype:ro
5151
5252For example, ::
5353
5454 $ docker run --rm -v $HOME/fullds005:/data:ro -v $HOME/dockerout:/out \
55- -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.6 /site-packages/fmriprep:ro \
55+ -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.7 /site-packages/fmriprep:ro \
5656 poldracklab/fmriprep:latest /data /out/out participant \
5757 -w /out/work/
5858
@@ -65,14 +65,14 @@ This is the equivalent of using ``--entrypoint=bash`` and omitting the fmriprep
6565arguments in a ``docker `` command::
6666
6767 $ docker run --rm -v $HOME/fullds005:/data:ro -v $HOME/dockerout:/out \
68- -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.6 /site-packages/fmriprep:ro --entrypoint=bash \
68+ -v $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.7 /site-packages/fmriprep:ro --entrypoint=bash \
6969 poldracklab/fmriprep:latest
7070
7171Patching containers can be achieved in Singularity analogous to ``docker ``
7272using the ``--bind `` (``-B ``) option: ::
7373
7474 $ singularity run \
75- -B $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.6 /site-packages/fmriprep \
75+ -B $HOME/projects/fmriprep/fmriprep:/usr/local/miniconda/lib/python3.7 /site-packages/fmriprep \
7676 fmriprep.img \
7777 /scratch/dataset /scratch/out participant -w /out/work/
7878
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