Merge pull request #159 from satra/fix/macos

fix: remove macos dir

Author: satra

install/Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.1
-# Timestamp: 2018-08-23 13:33:48 UTC
+# Timestamp: 2018-09-13 15:00:27 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -152,7 +152,8 @@ RUN mkdir -p /opt/data && cd /opt/data && \
            rm OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \
            curl -sSL https://osf.io/download/dcf94/ -o OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
            tar zxf OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
-           rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz
+           rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
+           rm -rf __MACOSX
 
 RUN bash -c 'source /opt/miniconda-latest/etc/profile.d/conda.sh && \
                conda activate mb && \
@@ -257,7 +258,7 @@ RUN echo '{ \
     \n    ], \
     \n    [ \
     \n      "run", \
-    \n      "mkdir -p /opt/data && cd /opt/data && \\\\n    curl -sSL https://osf.io/download/rh9km/?revision=2 -o templates.zip && \\\\n    unzip templates.zip && \\\\n    rm -f /opt/data/templates.zip && \\\\n    curl -sSL https://osf.io/download/d2cmy/ -o OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz && \\\\n    curl -sSL https://osf.io/download/qz3kx/ -o OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    tar zxf OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    rm OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    curl -sSL https://osf.io/download/dcf94/ -o OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \\\\n    tar zxf OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \\\\n    rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz" \
+    \n      "mkdir -p /opt/data && cd /opt/data && \\\\n    curl -sSL https://osf.io/download/rh9km/?revision=2 -o templates.zip && \\\\n    unzip templates.zip && \\\\n    rm -f /opt/data/templates.zip && \\\\n    curl -sSL https://osf.io/download/d2cmy/ -o OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz && \\\\n    curl -sSL https://osf.io/download/qz3kx/ -o OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    tar zxf OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    rm OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \\\\n    curl -sSL https://osf.io/download/dcf94/ -o OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \\\\n    tar zxf OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \\\\n    rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \\\\n    rm -rf __MACOSX" \
     \n    ], \
     \n    [ \
     \n      "run_bash", \

install/neurodocker.sh

@@ -70,7 +70,8 @@ docker run --rm kaczmarj/neurodocker:0.4.1 generate docker \
     rm OASIS-TRT_brains_to_OASIS_Atropos_template.tar.gz && \
     curl -sSL https://osf.io/download/dcf94/ -o OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
     tar zxf OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
-    rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz' \
+    rm OASIS-TRT_labels_to_OASIS_Atropos_template.tar.gz && \
+    rm -rf __MACOSX' \
   --run-bash 'source /opt/miniconda-latest/etc/profile.d/conda.sh && \
         conda activate mb && \
         git clone https://github.com/nipy/mindboggle.git && \