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lines changed Original file line number Diff line number Diff line change 1- # Generated by Neurodocker version 0.4.2
2- # Timestamp: 2018-11-26 23:26:28 UTC
1+ # Generated by Neurodocker version 0.4.2-3-gf7055a1
2+ # Timestamp: 2018-11-26 23:42:54 UTC
33#
44# Thank you for using Neurodocker. If you discover any issues
55# or ways to improve this software, please submit an issue or
@@ -121,23 +121,23 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
121121 && sync && conda clean -tipsy && sync \
122122 && conda create -y -q --name mb \
123123 && conda install -y -q --name mb \
124- python=3.6 \
125- pip \
126- jupyter \
127- cmake \
128- mesalib \
129- vtk \
130- pandas \
131- matplotlib \
132- colormath \
133- nipype>=1.1.4 \
134- tbb-devel \
135- nose \
124+ ' python=3.6' \
125+ ' pip' \
126+ ' jupyter' \
127+ ' cmake' \
128+ ' mesalib' \
129+ ' vtk' \
130+ ' pandas' \
131+ ' matplotlib' \
132+ ' colormath' \
133+ ' nipype>=1.1.4' \
134+ ' tbb-devel' \
135+ ' nose' \
136136 && sync && conda clean -tipsy && sync \
137137 && bash -c "source activate mb \
138138 && pip install --no-cache-dir \
139- datalad[full] \
140- duecredit" \
139+ ' datalad[full]' \
140+ ' duecredit' " \
141141 && rm -rf ~/.cache/pip/* \
142142 && sync \
143143 && sed -i '$isource activate mb' $ND_ENTRYPOINT
Original file line number Diff line number Diff line change 4343# docker run --rm -ti -v $HOST:/home/jovyan/work nipy/mindboggle $IMAGE --id $ID --out $OUT
4444# ##############################################################################
4545
46+ image=" kaczmarj/neurodocker:master@sha256:936401fe8f677e0d294f688f352cbb643c9693f8de371475de1d593650e42a66"
47+
4648# Generate a dockerfile for building a mindboggle container
47- docker run --rm kaczmarj/neurodocker:0.4.2 generate docker \
49+ docker run --rm ${image} generate docker \
4850 --base neurodebian:stretch \
4951 --pkg-manager apt \
5052 --install graphviz tree git-annex-standalone vim \
@@ -54,7 +56,7 @@ docker run --rm kaczmarj/neurodocker:0.4.2 generate docker \
5456 --ants version=b43df4bfc8 method=source cmake_opts=' -DBUILD_SHARED_LIBS=ON' make_opts=' -j 4' \
5557 --run ' ln -s /usr/lib/x86_64-linux-gnu /usr/lib64' \
5658 --miniconda \
57- conda_install=" python=3.6 pip jupyter cmake mesalib vtk pandas \
59+ conda_install=" python=3.6 pip jupyter cmake mesalib vtk pandas
5860 matplotlib colormath nipype>=1.1.4 tbb-devel nose" \
5961 pip_install=" datalad[full] duecredit" \
6062 create_env=" mb" \
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