@@ -329,7 +329,7 @@ else:
329329 transformer_nn = Node (ApplyTransforms (), name = "transformer_nn" )
330330 transformer_nn .inputs .reference_image = IMAGE
331331 transformer_nn .inputs .dimension = 3
332- transformer_nn .inputs .invert_transform_flags = [False ] * N
332+ transformer_nn .inputs .invert_transform_flags = [False , False ]
333333 transformer_nn .inputs .input_image = '/opt/data/OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz'
334334 transformer_nn .inputs .interpolation = 'NearestNeighbor'
335335
@@ -382,7 +382,6 @@ else:
382382 name = "transformer_nn" )
383383 transformer_nn .inputs .reference_image = IMAGE
384384 transformer_nn .inputs .dimension = 3
385- transformer_nn .inputs .invert_transform_flags = [False , False ]
386385 transformer_nn .inputs .input_image = labels [:N ]
387386 transformer_nn .inputs .interpolation = 'NearestNeighbor'
388387
@@ -416,7 +415,11 @@ else:
416415 mbFlow .connect (corticalthickness , 'BrainSegmentation' ,
417416 Mindboggle , 'antsseg' )
418417Mindboggle .inputs .out = mindboggle_output
418+ < << << << HEAD
419419Mindboggle .inputs .prov = False # args.prov disable
420+ == == == =
421+ Mindboggle .inputs .prov = False # args.prov
422+ > >> >> >> 66144 b0f47b9b3294361cdbf440d768c9252b5cb
420423Mindboggle .inputs .args = '--roygbiv' # ' --graph hier'
421424if args .mb_num_threads :
422425 Mindboggle .inputs .num_threads = args .mb_num_threads
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