v2.1.0

Added features / functionality:

• Added a temporal hybrid ODE-ABM-based model
• Added spatially resolved feedback simulation
• Extended integrator classes and reimplemented SDE models
• Adjusted memilio-generation for flow models and automatic differentiation
• Added setup for performance monitoring with LIKWID
• Introduction of a timing framework
• Export TimeSeries objects into csv files
• Added quarantine effectiveness parameter to ABM
• C++ Code creation based on standardized formats for ODEs
• Added GitHub bot to inform on new discussions

General changes:

• Reworked ABM state transitions
• Updated minimum and latest Ubuntu and Windows versions which are tested in CI
• Fully reworked and extended documentation
• Deactivated old GitHubPages
• Enhanced testing logic in ABM
• Improved trip addition in ABM
• Changes in model initializations due to changes in provision of intensive care and SARS-CoV-2 vaccination data
• Streamline code for reading in data in model specific IO files
• Updated simple surrogate models
• Renamed compartmentalmodel.h to compartmental_model.h

Corrections:

• Corrected the different output on Mac
• Fix population download handling
• Property of MobilityParametersEdge was not accessible in python bindings

Minor changes:

• Updated citations
• Updated coding guidelines and pull request template
• Cancel concurrent and redundant CI runs

Merged pull requests

• 1243 Deactivate old github pages documentation by @mknaranja in #1244
• 1019 Adjust memilio-generation for flow models and automatic differentiation by @dr2001dlr in #1153
• 1264 Introduce likwid to memilio by @charlie0614 in #1265
• 1270 Documentation build fails by @kilianvolmer in #1271
• 17 Timing framework by @reneSchm in #1179
• 703 different output for Mac by @xsaschako in #1285
• 1268 Vaccination data reporting expired by @HenrZu in #1269
• 1246 Export TimeSeries into csv file by @HenrZu in #1255
• 1242 update simple surrogate model by @mhheger in #1252
• Bump Windows version in CI by @reneSchm in #1298
• 1108 Streamline code for reading in data in model specific IO files by @HenrZu in #1163
• 1300 Update surragete model test to work with new pyfakefs version by @xsaschako in #1301
• 1299 Fix population download handling by @HenrZu in #1302
• 1178 code creation based on standardised formats for ODEs by @kilianvolmer in #1235
• 1304 renamed compartmentalmodel.h to compartmental_model.h by @Spiritedswordsman in #1305
• 1233 further enhance read the docs by @mknaranja in #1289
• 1239 implement temporal hybrid model by @jubicker in #1262
• 1312 Accelerate documentation build by @HenrZu in #1313
• 1293 update secir groups surrogate models by @mhheger in #1297
• 1317 Property of MobilityParametersEdge not accessible in python bindings by @charlie0614 in #1319
• 1101 Extend integrator classes and reimplement SDE models. by @reneSchm in #1296
• 1277 Quarantine Effectiveness by @xsaschako in #1282
• 1310 Spatially resolved feedback simulation by @HenrZu in #1311
• 1327 add concurrency for CI by @xsaschako in #1328
• 1280 trip addition overhaul by @xsaschako in #1281
• 1250 enhance testing logic in abm by @xsaschako in #1276
• 1330 GitHub bot by @xsaschako in #1331
• 1306 further extend and review the documentation by @HenrZu in #1314

New Contributors

• @mhheger made their first contribution in #1252

Full Changelog: v2.0.0...v2.1.0