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[master < T350] Add graphml docs #1020

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add graphml docs
ind1xa Aug 25, 2023
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217 changes: 212 additions & 5 deletions mage/query-modules/python/export-util.md
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Expand Up @@ -21,7 +21,7 @@ export const Highlight = ({children, color}) => (
);

Module for exporting a graph database or query results in different formats. Currently, this
module supports [**exporting database to a JSON file format**](#jsonpath) and [**exporting query results in a CSV file format**](#csv_queryquery-file_path-stream).
module supports [**exporting database to a JSON file format**](#jsonpath), [**exporting query results in a CSV file format**](#csv_queryquery-file_path-stream) and [**exporting database to a graphML file format**](#graphmlpath-config).

[![docs-source](https://img.shields.io/badge/source-export_util-FB6E00?logo=github&style=for-the-badge)](https://github.com/memgraph/mage/blob/main/python/export_util.py)

Expand Down Expand Up @@ -165,6 +165,83 @@ where `path` is the path to a local CSV file that will be created inside the

</Tabs>

### `graphml(path, config)`

#### Input:

* `path: string` ➡ path to the graphML file that will contain the exported graph database.
* `config: Map (default={})` ➡ configuration parameters explained below.

#### Parameters:

| Name | Type | Default | Description |
|- |- |- |- |
| stream | Bool | False | Stream the file content directly to the client into the status field. |
| format | String | " " | Set the export format to either "gephi" or "tinkerpop". |
| caption | List | [ ] | A list of keys of properties whose value is eligible as value for the `label` data element in Gephi format. Order is important and if no match is found, then there is a fallback to the node's first property. If the node has no properties then the ID is used. |
| useTypes | Bool | False | Store property values' type information. |
| leaveOutLabels | Bool | False | Do not store node's labels. |
| leaveOutProperties | Bool | False | Do not store node's properties. |

#### Output:

* `status: string` ➡ file content if stream is set to `True` in configuration parameters, `success` otherwise.

#### Usage:

The `path` you have to provide as procedure argument depends on how you started
Memgraph.

<Tabs
groupId="export_to_json_usage"
defaultValue="docker"
values={[
{label: 'Docker', value: 'docker'},
{label: 'Linux', value: 'linux'},
]
}>

<TabItem value="docker">

If you ran Memgraph with Docker, database will be exported to a graphML file inside
the Docker container. We recommend exporting the database to the graphML file
inside the `/usr/lib/memgraph/query_modules` directory.

You can call the procedure by running the following query:

```cypher
CALL export_util.graphml(path);
```
where `path` is the path to the JSON file inside the
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@vpavicic vpavicic Sep 8, 2023 •
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JSON or graphml?

`/usr/lib/memgraph/query_modules` directory in the running Docker container (e.g.,
`/usr/lib/memgraph/query_modules/export.graphml`).

:::info
You can [**copy the exported CSV file to your local file system**](/memgraph/how-to-guides/work-with-docker#how-to-copy-files-from-and-to-a-docker-container) using the [`docker cp`](https://docs.docker.com/engine/reference/commandline/cp/) command.
:::
</TabItem>

<TabItem value="linux">

To export database to a local graphML file create a new directory (for example,
`export_folder`) and run the following command to give the user `memgraph` the
necessary permissions:

```
sudo chown memgraph export_folder
```

Then, call the procedure by running the following query:

```cypher
CALL export_util.graphml(path);
```
where `path` is the path to a local JSON file that will be created inside the
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Suggested change
where `path` is the path to a local JSON file that will be created inside the
where `path` is the path to a local JSON file that will be created inside the

again, json?

`export_folder` (e.g., `/users/my_user/export_folder/export.graphml`).
</TabItem>

</Tabs>


## Example - Exporting database to a JSON file

Expand Down Expand Up @@ -306,8 +383,8 @@ You can create a simple graph database by running the following queries:
```cypher
CREATE (StrangerThings:TVShow {title:'Stranger Things', released:2016, program_creators:['Matt Duffer', 'Ross Duffer']})
CREATE (Eleven:Character {name:'Eleven', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Millie Bobby Brown'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Winona Ryder'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'David Harbour'})
Comment on lines +386 to +387
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I noticed this once and I was like... will i fix this... is this worth opening a PR for :D :D naaaah... :D thnx

CREATE (MikeWheeler:Character {name:'Mike Wheeler', portrayed_by:'Finn Wolfhard'})
CREATE (DustinHenderson:Character {name:'Dustin Henderson', portrayed_by:'Gaten Matarazzo'})
CREATE (LucasSinclair:Character {name:'Lucas Sinclair', portrayed_by:'Caleb McLaughlin'})
Expand Down Expand Up @@ -376,8 +453,8 @@ The output in the `export.csv` file looks like this:
```csv
name,portrayed_by,title,released,program_creators
Eleven,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Joyce Byers,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Jim Hopper,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Joyce Byers,Winona Ryder,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Jim Hopper,David Harbour,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Mike Wheeler,Finn Wolfhard,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Dustin Henderson,Gaten Matarazzo,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Lucas Sinclair,Caleb McLaughlin,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Expand All @@ -392,3 +469,133 @@ Erica Sinclair,Priah Ferguson,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer
</TabItem>

</Tabs>

## Example - Exporting database to a graphML file

<Tabs
groupId="export_to_graphml_example"
defaultValue="input"
values={[
{label: 'Step 1: Cypher load commands', value: 'load'},
{label: 'Step 2: Input graph', value: 'input'},
{label: 'Step 3: Running command', value: 'run'},
{label: 'Step 4: Results', value: 'result'},
]
}>

<TabItem value="load">

You can create a simple graph database by running the following queries:

```cypher
CREATE (StrangerThings:TVShow {title:'Stranger Things', released:2016, program_creators:['Matt Duffer', 'Ross Duffer']})
CREATE (Eleven:Character {name:'Eleven', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Winona Ryder'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'David Harbour'})
CREATE (MikeWheeler:Character {name:'Mike Wheeler', portrayed_by:'Finn Wolfhard'})
CREATE (DustinHenderson:Character {name:'Dustin Henderson', portrayed_by:'Gaten Matarazzo'})
CREATE (LucasSinclair:Character {name:'Lucas Sinclair', portrayed_by:'Caleb McLaughlin'})
CREATE (NancyWheeler:Character {name:'Nancy Wheeler', portrayed_by:'Natalia Dyer'})
CREATE (JonathanByers:Character {name:'Jonathan Byers', portrayed_by:'Charlie Heaton'})
CREATE (WillByers:Character {name:'Will Byers', portrayed_by:'Noah Schnapp'})
CREATE (SteveHarrington:Character {name:'Steve Harrington', portrayed_by:'Joe Keery'})
CREATE (MaxMayfield:Character {name:'Max Mayfield', portrayed_by:'Sadie Sink'})
CREATE (RobinBuckley:Character {name:'Robin Buckley', portrayed_by:'Maya Hawke'})
CREATE (EricaSinclair:Character {name:'Erica Sinclair', portrayed_by:'Priah Ferguson'})
CREATE
(Eleven)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JoyceByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JimHopper)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(MikeWheeler)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(DustinHenderson)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(LucasSinclair)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(NancyWheeler)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JonathanByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(WillByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(SteveHarrington)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(MaxMayfield)-[:ACTED_IN {seasons:[2, 3, 4]}]->(StrangerThings),
(RobinBuckley)-[:ACTED_IN {seasons:[3, 4]}]->(StrangerThings),
(EricaSinclair)-[:ACTED_IN {seasons:[2, 3, 4]}]->(StrangerThings);
```
</TabItem>

<TabItem value="input">

The image below shows the above data as a graph:

<img src={require('../../data/query-modules/python/export-util/export-util-csv-1.png').default}/>

</TabItem>

<TabItem value="run">

If you're using **Memgraph with Docker**, the following Cypher query will
export the database to the `export.graphml` file in the
`/usr/lib/memgraph/query_modules` directory inside the running Docker container.

```cypher
CALL export_util.graphml("/usr/lib/memgraph/query_modules/export.graphml, {useTypes: true})
YIELD status RETURN status;
```

If you're using **Memgraph on Ubuntu, Debian, RPM package or WSL**, the
following Cypher query will export the database to the `export.graphml` file in the
`/users/my_user/export_folder`.

```cypher
CALL export_util.graphml("/users/my_user/export_folder/export.graphml, {useTypes: true})
YIELD status RETURN status;
```

</TabItem>

<TabItem value="result">

The output in the `export.graphml` file looks like this:


```xml
<?xml version="1.0" encoding="UTF-8"?>
<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
<key id="labels" for="node" attr.name="labels" attr.type="string"/>
<key id="title" for="node" attr.name="title" attr.type="string"/>
<key id="released" for="node" attr.name="released" attr.type="int"/>
<key id="program_creators" for="node" attr.name="program_creators" attr.type="string" attr.list="string"/>
<key id="name" for="node" attr.name="name" attr.type="string"/>
<key id="portrayed_by" for="node" attr.name="portrayed_by" attr.type="string"/>
<key id="label" for="edge" attr.name="label" attr.type="string"/>
<key id="seasons" for="edge" attr.name="seasons" attr.type="string" attr.list="int"/>
<graph id="G" edgedefault="directed">
<node id="n0" labels=":TVShow"><data key="labels">:TVShow</data><data key="title">Stranger Things</data><data key="released">2016</data><data key="program_creators">["Matt Duffer", "Ross Duffer"]</data></node>
<node id="n1" labels=":Character"><data key="labels">:Character</data><data key="name">Eleven</data><data key="portrayed_by">Millie Bobby Brown</data></node>
<node id="n2" labels=":Character"><data key="labels">:Character</data><data key="name">Joyce Byers</data><data key="portrayed_by">Winona Ryder</data></node>
<node id="n3" labels=":Character"><data key="labels">:Character</data><data key="name">Jim Hopper</data><data key="portrayed_by">David Harbour</data></node>
<node id="n4" labels=":Character"><data key="labels">:Character</data><data key="name">Mike Wheeler</data><data key="portrayed_by">Finn Wolfhard</data></node>
<node id="n5" labels=":Character"><data key="labels">:Character</data><data key="name">Dustin Henderson</data><data key="portrayed_by">Gaten Matarazzo</data></node>
<node id="n6" labels=":Character"><data key="labels">:Character</data><data key="name">Lucas Sinclair</data><data key="portrayed_by">Caleb McLaughlin</data></node>
<node id="n7" labels=":Character"><data key="labels">:Character</data><data key="name">Nancy Wheeler</data><data key="portrayed_by">Natalia Dyer</data></node>
<node id="n8" labels=":Character"><data key="labels">:Character</data><data key="name">Jonathan Byers</data><data key="portrayed_by">Charlie Heaton</data></node>
<node id="n9" labels=":Character"><data key="labels">:Character</data><data key="name">Will Byers</data><data key="portrayed_by">Noah Schnapp</data></node>
<node id="n10" labels=":Character"><data key="labels">:Character</data><data key="name">Steve Harrington</data><data key="portrayed_by">Joe Keery</data></node>
<node id="n11" labels=":Character"><data key="labels">:Character</data><data key="name">Max Mayfield</data><data key="portrayed_by">Sadie Sink</data></node>
<node id="n12" labels=":Character"><data key="labels">:Character</data><data key="name">Robin Buckley</data><data key="portrayed_by">Maya Hawke</data></node>
<node id="n13" labels=":Character"><data key="labels">:Character</data><data key="name">Erica Sinclair</data><data key="portrayed_by">Priah Ferguson</data></node>
<edge id="e0" source="n1" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e1" source="n2" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e2" source="n3" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e3" source="n4" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e4" source="n5" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e5" source="n6" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e6" source="n7" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e7" source="n8" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e8" source="n9" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e9" source="n10" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e10" source="n11" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[2, 3, 4]</data></edge>
<edge id="e11" source="n12" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[3, 4]</data></edge>
<edge id="e12" source="n13" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[2, 3, 4]</data></edge>
</graph>
</graphml>
```
</TabItem>

</Tabs>
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