Merge pull request #1538 from jbv2/eager

jbv2 · web-flow · commit 45a97206848d · 2025-03-25T10:15:30.000+01:00
adding single bam samplesheet v3
diff --git a/testdata/Mammoth/mammooth_design_bam_v3.tsv b/testdata/Mammoth/mammooth_design_bam_v3.tsv
@@ -0,0 +1,2 @@
+sample_id	library_id	lane	colour_chemistry	pairment	strandedness	damage_treatment	r1	r2	bam	bam_reference_id
+JK2782	JK2782_TGGCCGATCAACGA_BAM	8	4	single	double	half			https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/bam/JK2782_JK2782_TGGCCGATCAACGA_BAM.bam	Mammoth_MT_Krause

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+sample_id library_id lane colour_chemistry pairment strandedness damage_treatment r1 r2 bam bam_reference_id`
	`2`	`+JK2782 JK2782_TGGCCGATCAACGA_BAM 8 4 single double half https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/bam/JK2782_JK2782_TGGCCGATCAACGA_BAM.bam Mammoth_MT_Krause`